Rh2AG437900

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002186
Physical Location & Seq
Forward (+)
64867436 .. 64870433
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG437900.1

Sequence Viewer

Length: 528 bp
ATGGGGAGTCTCTTCGGTTATCGTGATTCGAGCCCATCTGTGAAGAACATTCTTCTTCTAGACTCTGAAGGGAAGCGTGTGGCTGTCAAGTATTACTCTGATGATTGGCCGACGAATGCTGCAAAGCTAGCTTTTGAAAGATCTGTGTTTGCTAAGACTCTAAAGACAAATGCAAGGATAGAAGCGGAGATAATGATGTTTGAGAGCCACGTTGTTACATATAAGTTTGTGCAGGACCTTCACTTCTTTGTGACTGGAGGTGACGATGAAAACGAACTCATTTTAGCCACTGTACTACAGGGGTTCTTTGATGCAGTTGCCCTTCTCTTGAGGAACAACGTCGACAAAAGAGAGGCACTAGAGAACCTGGATCTCATACTTCTATGCTTTGATGAGATCGTTGATGGAGGGATGATACTTGAAACAGATCCAACTGTTATCGCAGGAAAGGTGGCAACTCATACCATGGATGCTGATGCACCATTGTCTGAGCAGGTAATGCAAACTTTCTGTTTAAGGGCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

175

Amino Acids

19.52

Weight (kDa)

4.62

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 14 - 153 4.5e-21 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccI GTMKAC 1 cut(s) 342
AciI CCGC 1 cut(s) 185
AclWI GGATC 2 cut(s) 378, 422
AcoI YGGCCR 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 2 cut(s) 137, 422
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 2 cut(s) 127, 131
AluI AGCT 2 cut(s) 127, 131
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 378, 422
AoxI GGCC 2 cut(s) 107, 519
ApeKI GCWGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 235, 519
AsuHPI GGTGA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 43, 398
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 3 cut(s) 59, 128, 359
BfmI CTRYAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 484
BglII AGATCT 1 cut(s) 140
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 235, 519
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 3 cut(s) 301, 460, 466
BmtI GCTAGC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 465
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 417, 475
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 2 cut(s) 109, 521
BsmAI GTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 2 cut(s) 109, 521
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 4 cut(s) 140, 370, 396, 427
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 1 cut(s) 185
BspANI GGCC 2 cut(s) 109, 521
BspCNI CTCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 484
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 378, 422
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 4 cut(s) 140, 370, 396, 427
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 292, 436
Bst6I CTCTTC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 153, 489
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 417, 475
BstKTI GATC 4 cut(s) 143, 373, 399, 430
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 4 cut(s) 140, 370, 396, 427
BstMWI GCNNNNNNNGC 2 cut(s) 128, 499
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 3 cut(s) 140, 370, 427
BstYI RGATCY 3 cut(s) 140, 370, 427
BsuRI GGCC 2 cut(s) 109, 521
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 2 cut(s) 417, 475
BtsIMutI CAGTG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 235, 519
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 466
CviJI RGCY 8 cut(s) 33, 83, 109, 127, 131, 207, 287, 521
CviKI_1 RGCY 8 cut(s) 33, 83, 109, 127, 131, 207, 287, 521
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 153, 489
DpnI GATC 4 cut(s) 142, 372, 398, 429
DpnII GATC 4 cut(s) 140, 370, 396, 427
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 87
EcoO109I RGGNCCY 2 cut(s) 235, 519
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 1 cut(s) 469
FaiI YATR 6 cut(s) 220, 222, 377, 385, 462, 467
FatI CATG 1 cut(s) 465
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 424, 482
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 59, 128, 359
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 109, 521
Hin1II CATG 1 cut(s) 469
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 4 cut(s) 7, 26, 62, 157
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 67, 100, 490
Hpy188III TCNNGA 3 cut(s) 23, 59, 328
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 2 cut(s) 115, 344
HpyAV CCTTC 3 cut(s) 62, 248, 332
HpyCH4III ACNGT 2 cut(s) 292, 436
HpyCH4IV ACGT 2 cut(s) 210, 339
HpyCH4V TGCA 6 cut(s) 122, 173, 232, 314, 479, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 499
HpyF3I CTNAG 2 cut(s) 153, 489
HpySE526I ACGT 2 cut(s) 210, 339
Hsp92II CATG 1 cut(s) 469
Kzo9I GATC 4 cut(s) 140, 370, 396, 427
LpnPI CCDG 7 cut(s) 218, 240, 284, 353, 380, 429, 479
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 301, 460, 466
MaeI CTAG 3 cut(s) 59, 128, 359
MaeII ACGT 2 cut(s) 210, 339
MaeIII GTNAC 3 cut(s) 214, 250, 260
MalI GATC 4 cut(s) 142, 372, 398, 429
MboI GATC 4 cut(s) 140, 370, 396, 427
MboII GAAGA 4 cut(s) 4, 44, 47, 55
MflI RGATCY 3 cut(s) 140, 370, 427
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 3 cut(s) 16, 56, 151
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 4 cut(s) 251, 324, 346, 401
MseI TTAA 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 128, 499
NcoI CCATGG 1 cut(s) 465
NdeII GATC 4 cut(s) 140, 370, 396, 427
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 469
NmuCI GTSAC 2 cut(s) 250, 260
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 3 cut(s) 15, 56, 151
PpsI GAGTC 3 cut(s) 15, 56, 151
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 2 cut(s) 235, 519
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 3 cut(s) 140, 370, 427
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 4 cut(s) 140, 370, 396, 427
Sau96I GGNCC 2 cut(s) 235, 519
SchI GAGTC 3 cut(s) 16, 56, 151
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 35
SetI ASST 9 cut(s) 129, 133, 213, 240, 262, 342, 369, 453, 498
SfaNI GCATC 3 cut(s) 301, 460, 466
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SsiI CCGC 1 cut(s) 185
SspMI CTAG 3 cut(s) 59, 128, 359
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 292, 436
TaiI ACGT 2 cut(s) 213, 342
TaqI TCGA 2 cut(s) 29, 342
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 250, 260
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 2 cut(s) 250, 260
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 235
XbaI TCTAGA 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 3 cut(s) 59, 128, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.