MD17G1173400.v1.1

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0002186
Physical Location & Seq
Reverse (-)
17992909 .. 17993594
686 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1173400.v1.1.491

Sequence Viewer

Length: 375 bp
ATGGATAATATTCTTCTTCTTGACTCTGAAGGAAAGCGTGTGGCAGTTAAGTACTTCTTGGATGATTGGCCAACAAATGGTGCAAAGTTTGCATTGGAAAAATCTTCGGAGATAATGATGTTTAAGAGCAACGTTATTATATATAAGTTCGTGCAAGACCTCCACATTTTTGTGACTGGAGGTGACGATAAAAATGAATTGATTTTAGCCACAGTTCTCCAAGGGTTCTTTGATGTAGTTACCCATCTCTTGAGTCTTCCAATATTTTCTTGTAAGAACAACATTGACAAACGGGAGGCACTAGAGAATCTGGATCTTATACTTTTATGTTTTGATAAGATTGCTGATGGAGGGTATATGCTATATGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

125

Amino Acids

14.06

Weight (kDa)

4.74

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 32 - 120 9.5e-06 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AclI AACGTT 1 cut(s) 132
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 77
AlwI GGATC 1 cut(s) 321
AoxI GGCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 194
BalI TGGCCA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 248
BccI CCATC 2 cut(s) 252, 341
BfaI CTAG 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 181
BshFI GGCC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 313
BspANI GGCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 67
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 2 cut(s) 70, 209
CviKI_1 RGCY 2 cut(s) 70, 209
CviQI GTAC 1 cut(s) 52
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaiI YATR 9 cut(s) 140, 142, 144, 320, 328, 357, 359, 364, 366
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FokI GGATG 1 cut(s) 74
FspBI CTAG 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 70
HinfI GANTC 3 cut(s) 23, 253, 307
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 28, 109
Hpy188III TCNNGA 3 cut(s) 20, 250, 311
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 83, 92, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 132
Kzo9I GATC 1 cut(s) 313
LpnPI CCDG 2 cut(s) 162, 296
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 172, 182, 238
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 5, 8, 96, 248
MflI RGATCY 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 70
MluCI AATT 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 70
MlyI GAGTC 2 cut(s) 17, 262
MnlI CCTC 4 cut(s) 170, 173, 289, 344
Mox20I TGGCCA 1 cut(s) 70
MscI TGGCCA 1 cut(s) 70
MseI TTAA 3 cut(s) 48, 123, 373
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 172, 182
PfeI GAWTC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 77
PleI GAGTC 2 cut(s) 17, 261
PpsI GAGTC 2 cut(s) 17, 261
Psp1406I AACGTT 1 cut(s) 132
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 3 cut(s) 48, 123, 373
Sau3AI GATC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 2 cut(s) 17, 262
SetI ASST 3 cut(s) 135, 162, 184
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 197
SspI AATATT 2 cut(s) 10, 264
SspMI CTAG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 135
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 3 cut(s) 48, 123, 373
Tru9I TTAA 3 cut(s) 48, 123, 373
TseFI GTSAC 2 cut(s) 172, 182
Tsp45I GTSAC 2 cut(s) 172, 182
TspDTI ATGAA 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 77
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.