Prupe.3G046200_v2.0.a1

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002186
Physical Location & Seq
Reverse (-)
3304266 .. 3307280
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G046200.1

Sequence Viewer

Length: 675 bp
ATGACGAAATTGCCCATCTCCTTCCCTCTAAAGAAAAGGTTCCAAGTACCAACCTTCAAACGTTTACGCAAAACTCTGCACTGCAAAGCTAAAGCTCTCTGTTTTCCACATTACGTGAAGATGGCCAGCCTCTTCTGCTATCGTGATTCATGCCCATCTGTGAAGAACATTCTTCTTCTAGATTCTGAAGGCAAGCGTGTAGCCGTCAAGTATTTCTCGGATGAATGGCCAACAAATGGTGCAAAGTTAGCTTTTGAAAAATCTATTTTTACCAAGACTCTGAAGACAAATGCTCGGATAGAAGCGGAGATAATGATGTTTGACAGCAATGTCATTATATATAAGTTCATACAGGACCTCCACTTCTTTGTGACTGGAGGTGACGATGAAAACGAACTCATTTTAGCCACAGTTCTTCAGGGGTTCTTTGATGCAGTTGCACTTCTCTTGAGGAACAATGTCGACAAAAGGGAGGCACTAGAGAATCTGGATCTTATTCTTCTATGCTTTGATGAGATTGTTGATGGGGGGATGGTACTTGAAACCGATCCGAGTATTATTGCAGGAAAGGTGGCAACTCATACCATGGACGCCGATGCACCCTTGTCTGAGCAGACCATAACACAAGCATGGGCTACAGCAAGGGAACATCTAACCAGAACCCTTCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

225

Amino Acids

25.41

Weight (kDa)

7.64

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 462
AciI CCGC 1 cut(s) 305
AclI AACGTT 1 cut(s) 61
AclWI GGATC 2 cut(s) 498, 542
AcoI YGGCCR 2 cut(s) 123, 227
AcuI CTGAAG 3 cut(s) 207, 302, 401
AcyI GRCGYC 1 cut(s) 591
AfaI GTAC 2 cut(s) 48, 537
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 58, 257, 542
AluBI AGCT 3 cut(s) 89, 95, 251
AluI AGCT 3 cut(s) 89, 95, 251
AlwI GGATC 2 cut(s) 498, 542
AoxI GGCC 2 cut(s) 123, 227
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 355
BalI TGGCCA 2 cut(s) 125, 229
BbsI GAAGAC 1 cut(s) 290
BccI CCATC 5 cut(s) 23, 115, 163, 518, 526
BceAI ACGGC 1 cut(s) 188
BfaI CTAG 2 cut(s) 179, 479
BfmI CTRYAG 1 cut(s) 636
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 41
BmsI GCATC 2 cut(s) 421, 586
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 469, 653
BsaAI YACGTR 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 585
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 2 cut(s) 226, 537
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 125, 229
BslI CCNNNNNNNGG 1 cut(s) 236
BsnI GGCC 2 cut(s) 125, 229
Bsp143I GATC 2 cut(s) 490, 547
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 125, 229
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 2 cut(s) 498, 542
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 2 cut(s) 490, 547
BssNI GRCGYC 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 585
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 127, 194
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 2 cut(s) 226, 537
BstKTI GATC 2 cut(s) 493, 550
BstMBI GATC 2 cut(s) 490, 547
BstMWI GCNNNNNNNGC 2 cut(s) 135, 248
BstSFI CTRYAG 1 cut(s) 636
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 2 cut(s) 125, 229
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 2 cut(s) 226, 537
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 127, 194
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 47, 536
CviAII CATG 3 cut(s) 150, 586, 630
CviJI RGCY 9 cut(s) 89, 95, 125, 129, 203, 229, 251, 407, 635
CviKI_1 RGCY 9 cut(s) 89, 95, 125, 129, 203, 229, 251, 407, 635
CviQI GTAC 2 cut(s) 47, 536
DdeI CTNAG 1 cut(s) 609
DpnI GATC 2 cut(s) 492, 549
DpnII GATC 2 cut(s) 490, 547
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 123, 227
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 3 cut(s) 207, 302, 401
EcoO109I RGGNCCY 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 3 cut(s) 153, 589, 633
FatI CATG 3 cut(s) 149, 585, 629
FblI GTMKAC 1 cut(s) 462
FokI GGATG 2 cut(s) 233, 544
FspBI CTAG 2 cut(s) 179, 479
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 125, 229
HgaI GACGC 1 cut(s) 599
Hin1I GRCGYC 1 cut(s) 591
Hin1II CATG 3 cut(s) 153, 589, 633
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 4 cut(s) 146, 182, 277, 484
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 65, 463
Hpy188I TCNGA 6 cut(s) 187, 220, 282, 297, 552, 610
Hpy188III TCNNGA 4 cut(s) 143, 179, 448, 488
Hpy8I GTNNAC 2 cut(s) 65, 463
HpyAV CCTTC 4 cut(s) 31, 64, 182, 674
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 61, 114
HpyCH4V TGCA 7 cut(s) 79, 84, 242, 434, 440, 563, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 248
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 2 cut(s) 61, 114
Hsp92I GRCGYC 1 cut(s) 591
Hsp92II CATG 3 cut(s) 153, 589, 633
Kzo9I GATC 2 cut(s) 490, 547
LpnPI CCDG 7 cut(s) 139, 338, 360, 404, 473, 549, 670
LweI GCATC 2 cut(s) 421, 586
MaeI CTAG 2 cut(s) 179, 479
MaeII ACGT 2 cut(s) 61, 114
MaeIII GTNAC 2 cut(s) 370, 380
MalI GATC 2 cut(s) 492, 549
MboI GATC 2 cut(s) 490, 547
MboII GAAGA 8 cut(s) 124, 130, 164, 167, 175, 295, 407, 491
MflI RGATCY 1 cut(s) 490
MlsI TGGCCA 2 cut(s) 125, 229
MluCI AATT 1 cut(s) 8
MluNI TGGCCA 2 cut(s) 125, 229
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 6 cut(s) 36, 140, 368, 371, 444, 466
Mox20I TGGCCA 2 cut(s) 125, 229
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 2 cut(s) 125, 229
MslI CAYNNNNRTG 1 cut(s) 628
Msp20I TGGCCA 2 cut(s) 125, 229
MwoI GCNNNNNNNGC 2 cut(s) 135, 248
NcoI CCATGG 1 cut(s) 585
NdeII GATC 2 cut(s) 490, 547
NlaIII CATG 3 cut(s) 153, 589, 633
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 370, 380
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 146, 182, 484
PflMI CCANNNNNTGG 1 cut(s) 236
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 355
Psp1406I AACGTT 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 2 cut(s) 48, 537
RsaNI GTAC 2 cut(s) 47, 536
RseI CAYNNNNRTG 1 cut(s) 628
SalI GTCGAC 1 cut(s) 461
Sau3AI GATC 2 cut(s) 490, 547
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 1 cut(s) 271
SfaNI GCATC 2 cut(s) 421, 586
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 448, 668
SmoI CTYRAG 2 cut(s) 448, 668
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 179, 479
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 64, 117
TaqI TCGA 1 cut(s) 462
TasI AATT 1 cut(s) 8
TfiI GAWTC 3 cut(s) 146, 182, 484
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 2 cut(s) 370, 380
Tsp45I GTSAC 2 cut(s) 370, 380
TspDTI ATGAA 4 cut(s) 138, 237, 337, 402
TspRI CASTG 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 355
XbaI TCTAGA 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 179, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.