Rw5G008860

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002186
Physical Location & Seq
Reverse (-)
9542107 .. 9544118
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008860.1

Sequence Viewer

Length: 540 bp
ATGGGTAAAGATTCATCCCCATCTGTGAAGAACATTCTTCTTCTAGACTCTGAAGGGAAGCGTGTGGCTGTCAAGTATTACTCAGATGATTGGTCAACAAATGGTGCAAAGCTAGCTTTTGAAAAATCTGTATTCGCTAAGACTCTAAAGACAAATGCAAGGCTAGAAGCGGAGATAATGATGTTCGACAGCAACATTGTTATATACAAGTTTATGCAGGACCTTCACTTCTTTGTGACTGGAGGCGACGATGAAAACGAACTCATTTTAGCCACTGTACTTCAGGGATTCTTTGATGCAGTTGCCCTTCTCTTGAGGCACAATGTCGACAAAAGGGAGGCGCTAGAGAACCTGGATCTCATACTTCTATGCTTTGATGAGATCGTTGATGGAGGGATGATACTTGAAACAGATCCAACTGTTATCGCAGGAAAGGTAGCAACTCATACCATGGATGCTGATGCACCATTGTCTGAGCAGACTCTAACACAAGCCTGGGCTGTAGCAAGGGAACATCTAACCAGAACCCTTCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

179

Amino Acids

19.95

Weight (kDa)

4.79

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 9 - 148 1.4e-21 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AciI CCGC 1 cut(s) 170
AclWI GGATC 2 cut(s) 363, 407
AcuI CTGAAG 2 cut(s) 72, 266
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 2 cut(s) 122, 407
AjnI CCWGG 2 cut(s) 351, 494
AluBI AGCT 2 cut(s) 112, 116
AluI AGCT 2 cut(s) 112, 116
AlwI GGATC 2 cut(s) 363, 407
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 220
BccI CCATC 2 cut(s) 28, 383
BciT130I CCWGG 2 cut(s) 353, 496
BfaI CTAG 4 cut(s) 44, 113, 164, 344
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 353, 496
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 353, 496
BmsI GCATC 3 cut(s) 286, 445, 451
BmtI GCTAGC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 450, 495
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 2 cut(s) 353, 496
BseDI CCNNGG 2 cut(s) 450, 495
BseGI GGATG 3 cut(s) 14, 402, 460
BseMII CTCAG 2 cut(s) 96, 465
BseNI ACTGG 1 cut(s) 244
Bsp143I GATC 3 cut(s) 355, 381, 412
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 95, 466
BspOI GCTAGC 1 cut(s) 116
BspPI GGATC 2 cut(s) 363, 407
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 450, 495
BssMI GATC 3 cut(s) 355, 381, 412
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 353, 496
Bst4CI ACNGT 2 cut(s) 277, 421
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 82, 138, 474
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 14, 402, 460
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 358, 384, 415
BstMBI GATC 3 cut(s) 355, 381, 412
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 353, 496
BstSCI CCNGG 2 cut(s) 351, 494
BstSFI CTRYAG 1 cut(s) 501
BstX2I RGATCY 2 cut(s) 355, 412
BstYI RGATCY 2 cut(s) 355, 412
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 3 cut(s) 14, 402, 460
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 451
CviJI RGCY 7 cut(s) 68, 112, 116, 163, 272, 494, 500
CviKI_1 RGCY 7 cut(s) 68, 112, 116, 163, 272, 494, 500
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 3 cut(s) 82, 138, 474
DpnI GATC 3 cut(s) 357, 383, 414
DpnII GATC 3 cut(s) 355, 381, 412
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 72, 266
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 351, 494
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 454
FaiI YATR 7 cut(s) 203, 205, 215, 362, 370, 447, 452
FatI CATG 1 cut(s) 450
FblI GTMKAC 1 cut(s) 327
FokI GGATG 2 cut(s) 409, 467
FspBI CTAG 4 cut(s) 44, 113, 164, 344
GlaI GCGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 344
HhaI GCGC 1 cut(s) 343
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 2 cut(s) 96, 328
HindII GTYRAC 2 cut(s) 96, 328
HinfI GANTC 5 cut(s) 11, 47, 142, 288, 481
Hpy166II GTNNAC 2 cut(s) 96, 328
Hpy188I TCNGA 3 cut(s) 52, 85, 475
Hpy188III TCNNGA 2 cut(s) 44, 313
Hpy8I GTNNAC 2 cut(s) 96, 328
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 4 cut(s) 47, 233, 317, 539
HpyCH4III ACNGT 2 cut(s) 277, 421
HpyCH4V TGCA 5 cut(s) 107, 158, 217, 299, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 3 cut(s) 82, 138, 474
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 3 cut(s) 355, 381, 412
LpnPI CCDG 9 cut(s) 203, 225, 269, 338, 365, 414, 481, 508, 535
LweI GCATC 3 cut(s) 286, 445, 451
MaeI CTAG 4 cut(s) 44, 113, 164, 344
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 357, 383, 414
MboI GATC 3 cut(s) 355, 381, 412
MboII GAAGA 3 cut(s) 29, 32, 40
MflI RGATCY 2 cut(s) 355, 412
MlyI GAGTC 3 cut(s) 41, 136, 475
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 4 cut(s) 236, 309, 331, 386
MspR9I CCNGG 2 cut(s) 353, 496
MvaI CCWGG 2 cut(s) 353, 496
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 450
NdeII GATC 3 cut(s) 355, 381, 412
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 11, 288
PleI GAGTC 3 cut(s) 41, 136, 475
PpsI GAGTC 3 cut(s) 41, 136, 475
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 351, 494
PspGI CCWGG 2 cut(s) 351, 494
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
PsuI RGATCY 2 cut(s) 355, 412
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SalI GTCGAC 1 cut(s) 326
Sau3AI GATC 3 cut(s) 355, 381, 412
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 3 cut(s) 41, 136, 475
ScrFI CCNGG 2 cut(s) 353, 496
SetI ASST 5 cut(s) 114, 118, 225, 354, 438
SfaNI GCATC 3 cut(s) 286, 445, 451
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SsiI CCGC 1 cut(s) 170
SspMI CTAG 4 cut(s) 44, 113, 164, 344
StyD4I CCNGG 2 cut(s) 351, 494
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 277, 421
TaqI TCGA 2 cut(s) 186, 327
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 2 cut(s) 11, 288
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 220
XbaI TCTAGA 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 4 cut(s) 44, 113, 164, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.