FvH4_3g15940

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004226
Physical Location & Seq
Forward (+)
10039984 .. 10042686
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15940.t1

Sequence Viewer

Length: 2049 bp
ATGTTAACAGCAAACATCCCAACTCACCTGAGTCTCAGGTTCCTGAAGATTCACTGCAACTCCGGCGATTTGCAACGTGCCCGCCACGTATTCAACCAAATTCCTGAACCAGACCTGCGCGCATGGACCCTGCTAATATCAGCCCACACGCGACATGGGTTCGTCAGGGAAGCTATAAACCTCTACGCTTCACTCAGAGCTCGCAACATTGCTCCTGACAATCTTCTACTTGTCTCTGTTGCCAAGGCCTGTGCGGTTCTGGGTGATCTCCGAAACGCCACTGAGCTTCACAATGAAGCGATTCGGTTCGGGTTTGGTTTGGATGTTTCTTTGGGCAATGCCATGGTTGATATGTTTGGGAAATGCAAGTTTGTTGATGGGGCGAGGCGGGTTTTCGATGCAATGCCGGTGAAGGATGTCATTTCTTGGACATCAATATGTTCTTGTTATGTTCGCTGTGGTCTGCCGAGGCAGGGCTTAGTTGCATTTAGAGAGATGGGATTGAGTGGAGTGAGACCCAATGCGGTGACGGTGTCGACTGTCCTGCCTGCTTGCTCTGAGTTGAGGGATTTGAATTCAGGGAGGGAGATTCATGGATATGTGGTGAAACATGGAATGGAAGGGAATGTATTTGTTAGCAGTGCACTTGTGAAGGTGTATGCTAGTTCCGTGAGTATCAAGCAAGCGCAGAAGGTGTTTGATCAAATGTCACAACGAGATGTTGTGTCTTGGAATGTGCTTTTAACAGCGTATTTTGATAATAGGGAATGGGAGAAGGGTATGGCTCTGTTTAGTAGGATGAGAAGTGAAGGTGTTAGATTGGATGGTGCGTTGTGGAACGCTGTGATTGGTGGGTGCTTGACTAATGGCGAAACTGAGCAGGCGCTGAAAATGCTTGGGATGATGCAAGAGTCGGGGTTTAAGCCGAATCAGATAACAGTTACTAGTTTGTTGCCGGCTTGCAAAGATTTGGAGAGCCTGAGGGCAGGCAAAGAGGTTCATAGCTACATTTTTAGGAACTGTTTGATGAATGACTTGGCAAGCACAACAGCTTTGGTTTTCATGTACGCAAAATGTGGGGAGTTGGAACTGTCAAGGAGGGTGTTCAGTTTGATGCCGGAAAAGGACACGGTTGCTTGGAATACAATGATCATCGGAAACTCAATGCATGGGAATGGAGGAGAAGCATTGTTGCTATACAGAAACATGTTAGAGTCCGGGGTGAAGCCCAATTCTGTTACATACACTGGTGTTTTGTGTGGTTGTAGTCATTCGCGGCTGGTTGATGAAGGCATCAAGGTTTTTGAGTCAATGAGGGATCACTTAGTAGAACCTGATGCAGATCATTATTCGTGTTTGGTTGATATACTTAGCCGTGCTGGTCGACTAGAAGAGGCCTATCAGTTTATACAGAGAATGCCTATGGAACCAACTGCAAGTGCTTGGGGAGCATTGCTTGGTGCCTGTAGAGTGCACAAAAATGTGGAGTTGGCAAAAATAGCAGCAAACAGGCTGTTTGAGATTGAACCAGATAACCCTGGTAACTATGTATTGTTGTCCAACATTTTTGTAACTGCCCAAAAATGGGAAGAAGCTTCAGAAACTAGGAAGCTGATGAGGGACAGAGGAGTCGCAAAAACACCAGGTTGTTCTTGGGTTCAGTTGAGAAATAGAGTCTACACTTTTGTTGCTGGTGATAGGAGTAATGAACATAGTGAAAAGATATACAAGTTTTTAAAGGAAATGGGTGAGAAGATGAGATTGGCAGGGTTTGTGCCAAACACGGATTTTGTTCTGCAAGATGTGGATCAAGAAGAGAAAGTGGGGACTCTTTGCAACCATAGTGAGAAGCTGGCTGTTGCTTTTGCAATGCTCAACTTGAATGGGGAGTCAACAATTCGGGTATTTAAGAATTTGAGGATATGTGGGGATTGCCATAATGCCATCAAATACATGGGAAAGATAGTTGGTGTGAGGATTATAGTTAGAGATTCATTGAGGTTTCACCATTTCAATGATGGAGATTGTTCCTGTGGAGATTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

683

Amino Acids

76.18

Weight (kDa)

8.27

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 138 - 186 4.6e-06 PPR repeat family
PPR_long PF17177 189 - 313 8.9e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 239 - 275 5.5e-07 PPR repeat family
PPR_3 PF13812 263 - 321 9.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 278 - 321 1.9e-09 PPR repeat family
PPR_2 PF13041 375 - 423 1.8e-11 PPR repeat family
PPR_long PF17177 388 - 473 6e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 492 - 554 1.7e-23 E motif
DYW_deaminase PF14432 590 - 682 5.1e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1628
Acc36I ACCTGC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 1460
AccI GTMKAC 3 cut(s) 536, 1384, 1677
AccII CGCG 3 cut(s) 120, 151, 1276
AciI CCGC 5 cut(s) 82, 254, 388, 524, 1276
AclWI GGATC 2 cut(s) 1326, 1815
AcsI RAATTY 3 cut(s) 99, 574, 1912
AcuI CTGAAG 2 cut(s) 65, 1581
AfaI GTAC 1 cut(s) 1067
AfiI CCNNNNNNNGG 3 cut(s) 473, 1584, 1585
AflIII ACRYGT 1 cut(s) 1206
AgsI TTSAA 5 cut(s) 94, 574, 1526, 1882, 2014
AhlI ACTAGT 1 cut(s) 944
AjnI CCWGG 2 cut(s) 1537, 1642
AjuI GAANNNNNNNTTGG 2 cut(s) 1745, 1777
AluBI AGCT 8 cut(s) 173, 200, 286, 1005, 1052, 1595, 1612, 1852
AluI AGCT 8 cut(s) 173, 200, 286, 1005, 1052, 1595, 1612, 1852
Alw21I GWGCWC 3 cut(s) 202, 646, 1476
Alw26I GTCTC 3 cut(s) 38, 238, 508
Alw44I GTGCAC 2 cut(s) 642, 1472
AlwI GGATC 2 cut(s) 1326, 1815
AlwNI CAGNNNCTG 1 cut(s) 886
AoxI GGCC 2 cut(s) 246, 1395
ApaLI GTGCAC 2 cut(s) 642, 1472
ApeKI GCWGC 1 cut(s) 1502
ApoI RAATTY 3 cut(s) 99, 574, 1912
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 4 cut(s) 120, 122, 688, 886
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 1219
AsuHPI GGTGA 9 cut(s) 17, 275, 421, 538, 616, 1234, 1706, 1760, 1997
AvaII GGWCC 1 cut(s) 126
AxyI CCTNAGG 1 cut(s) 980
BaeGI GKGCMC 3 cut(s) 82, 646, 1476
BanI GGYRCC 1 cut(s) 1460
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 3 cut(s) 202, 646, 1476
BbvI GCAGC 1 cut(s) 1514
BccI CCATC 5 cut(s) 371, 490, 818, 1952, 2012
BceAI ACGGC 1 cut(s) 1359
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BciT130I CCWGG 2 cut(s) 1539, 1644
BclI TGATCA 2 cut(s) 700, 1149
BcnI CCSGG 1 cut(s) 1219
BcoDI GTCTC 3 cut(s) 38, 238, 508
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 4 cut(s) 663, 945, 1388, 1605
BfmI CTRYAG 1 cut(s) 1465
BfoI RGCGCY 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 123
BisI GCNGC 2 cut(s) 1277, 1503
BlsI GCNGC 2 cut(s) 1278, 1504
Bme1390I CCNGG 3 cut(s) 1219, 1539, 1644
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 4 cut(s) 41, 128, 1428, 1462
BmrFI CCNGG 3 cut(s) 1219, 1539, 1644
BmsI GCATC 5 cut(s) 388, 894, 1104, 1302, 1327
BpuMI CCSGG 1 cut(s) 1219
BsaAI YACGTR 1 cut(s) 88
BsaBI GATNNNNATC 2 cut(s) 1341, 1806
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 5 cut(s) 243, 342, 467, 1218, 1537
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 1584, 1585
Bse118I RCCGGY 2 cut(s) 406, 955
Bse1I ACTGG 1 cut(s) 1252
Bse21I CCTNAGG 1 cut(s) 980
Bse3DI GCAATG 5 cut(s) 207, 343, 408, 1451, 1875
Bse8I GATNNNNATC 2 cut(s) 1341, 1806
BseBI CCWGG 2 cut(s) 1539, 1644
BseDI CCNNGG 5 cut(s) 243, 342, 467, 1218, 1537
BseGI GGATG 6 cut(s) 15, 328, 421, 804, 829, 906
BseJI GATNNNNATC 2 cut(s) 1341, 1806
BseLI CCNNNNNNNGG 3 cut(s) 473, 1584, 1585
BseMI GCAATG 5 cut(s) 207, 343, 408, 1451, 1875
BseMII CTCAG 7 cut(s) 20, 49, 208, 273, 549, 867, 971
BseNI ACTGG 1 cut(s) 1252
BsePI GCGCGC 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 1194, 1641
BseSI GKGCMC 3 cut(s) 82, 646, 1476
BseXI GCAGC 1 cut(s) 1514
Bsh1236I CGCG 3 cut(s) 120, 151, 1276
BshFI GGCC 2 cut(s) 248, 1397
BshNI GGYRCC 1 cut(s) 1460
BsiHKAI GWGCWC 3 cut(s) 202, 646, 1476
BsiSI CCGG 5 cut(s) 63, 407, 956, 1118, 1218
BslFI GGGAC 2 cut(s) 1634, 1840
BslI CCNNNNNNNGG 3 cut(s) 473, 1584, 1585
BsmAI GTCTC 3 cut(s) 38, 238, 508
BsmFI GGGAC 2 cut(s) 1634, 1840
BsmI GAATGC 1 cut(s) 1422
BsnI GGCC 2 cut(s) 248, 1397
Bso31I GGTCTC 1 cut(s) 508
Bsp1286I GDGCHC 4 cut(s) 82, 202, 646, 1476
Bsp143I GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 5 cut(s) 82, 254, 388, 524, 1276
BspANI GGCC 2 cut(s) 248, 1397
BspCNI CTCAG 7 cut(s) 21, 48, 207, 274, 550, 868, 972
BspFNI CGCG 3 cut(s) 120, 151, 1276
BspLI GGNNCC 4 cut(s) 41, 128, 1428, 1462
BspMI ACCTGC 1 cut(s) 123
BspPI GGATC 2 cut(s) 1326, 1815
BspT107I GGYRCC 1 cut(s) 1460
BspTNI GGTCTC 1 cut(s) 508
BsrDI GCAATG 5 cut(s) 207, 343, 408, 1451, 1875
BsrFI RCCGGY 2 cut(s) 406, 955
BsrI ACTGG 1 cut(s) 1252
BssAI RCCGGY 2 cut(s) 406, 955
BssECI CCNNGG 5 cut(s) 243, 342, 467, 1218, 1537
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
BssT1I CCWWGG 2 cut(s) 243, 342
Bst2UI CCWGG 2 cut(s) 1539, 1644
Bst4CI ACNGT 6 cut(s) 532, 541, 940, 1022, 1092, 1132
Bst6I CTCTTC 2 cut(s) 1386, 1809
BstBAI YACGTR 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 6 cut(s) 15, 328, 421, 804, 829, 906
BstFNI CGCG 3 cut(s) 120, 151, 1276
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 4 cut(s) 120, 122, 688, 886
BstKTI GATC 6 cut(s) 268, 703, 1152, 1321, 1345, 1810
BstMAI GTCTC 3 cut(s) 38, 238, 508
BstMBI GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
BstMWI GCNNNNNNNGC 4 cut(s) 63, 892, 1448, 1499
BstNI CCWGG 2 cut(s) 1539, 1644
BstNSI RCATGY 1 cut(s) 1210
BstSCI CCNGG 3 cut(s) 1217, 1537, 1642
BstSFI CTRYAG 1 cut(s) 1465
BstSLI GKGCMC 3 cut(s) 82, 646, 1476
BstUI CGCG 3 cut(s) 120, 151, 1276
BstV1I GCAGC 1 cut(s) 1514
Bsu36I CCTNAGG 1 cut(s) 980
BsuRI GGCC 2 cut(s) 248, 1397
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 6 cut(s) 15, 328, 421, 804, 829, 906
BtsI GCAGTG 2 cut(s) 52, 646
BtsIMutI CAGTG 4 cut(s) 52, 279, 646, 1245
BveI ACCTGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 886
CfoI GCGC 4 cut(s) 120, 122, 688, 886
Cfr10I RCCGGY 2 cut(s) 406, 955
Cfr13I GGNCC 1 cut(s) 126
CsiI ACCWGGT 1 cut(s) 1642
Csp6I GTAC 1 cut(s) 1066
CviAII CATG 9 cut(s) 123, 155, 343, 593, 611, 1063, 1169, 1207, 1954
CviQI GTAC 1 cut(s) 1066
DpnI GATC 6 cut(s) 267, 702, 1151, 1320, 1344, 1809
DpnII GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
DraI TTTAAA 1 cut(s) 1737
DrdI GACNNNNNNGTC 1 cut(s) 1628
DseDI GACNNNNNNGTC 1 cut(s) 1628
Eam1104I CTCTTC 2 cut(s) 1386, 1809
EarI CTCTTC 2 cut(s) 1386, 1809
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 243, 342
Eco147I AGGCCT 2 cut(s) 248, 1397
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 65, 1581
Eco81I CCTNAGG 1 cut(s) 980
EcoICRI GAGCTC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 2 cut(s) 1537, 1642
EcoT14I CCWWGG 2 cut(s) 243, 342
EcoT22I ATGCAT 1 cut(s) 1170
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 243, 342
FaeI CATG 9 cut(s) 126, 158, 346, 596, 614, 1066, 1172, 1210, 1957
FaqI GGGAC 2 cut(s) 1634, 1840
FatI CATG 9 cut(s) 122, 154, 342, 592, 610, 1062, 1168, 1206, 1953
FauI CCCGC 2 cut(s) 89, 381
FbaI TGATCA 2 cut(s) 700, 1149
FblI GTMKAC 3 cut(s) 536, 1384, 1677
Fnu4HI GCNGC 2 cut(s) 1277, 1503
FokI GGATG 6 cut(s) 2, 335, 428, 811, 836, 913
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 1277, 1503
FspBI CTAG 4 cut(s) 663, 945, 1388, 1605
GlaI GCGC 4 cut(s) 119, 121, 687, 885
GluI GCNGC 2 cut(s) 1277, 1503
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 2 cut(s) 248, 1397
HapII CCGG 5 cut(s) 63, 407, 956, 1118, 1218
HhaI GCGC 4 cut(s) 120, 122, 688, 886
Hin1II CATG 9 cut(s) 126, 158, 346, 596, 614, 1066, 1172, 1210, 1957
Hin6I GCGC 4 cut(s) 118, 120, 686, 884
HinP1I GCGC 4 cut(s) 118, 120, 686, 884
HincII GTYRAC 4 cut(s) 6, 537, 1385, 1893
HindII GTYRAC 4 cut(s) 6, 537, 1385, 1893
HindIII AAGCTT 1 cut(s) 1593
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 5 cut(s) 63, 407, 956, 1118, 1218
HphI GGTGA 9 cut(s) 17, 275, 421, 538, 616, 1234, 1706, 1760, 1997
Hpy166II GTNNAC 7 cut(s) 6, 537, 644, 1385, 1474, 1678, 1893
Hpy188I TCNGA 6 cut(s) 197, 272, 559, 933, 1157, 1600
Hpy188III TCNNGA 4 cut(s) 43, 104, 215, 1811
Hpy8I GTNNAC 7 cut(s) 6, 537, 644, 1385, 1474, 1678, 1893
HpyAV CCTTC 7 cut(s) 406, 614, 646, 685, 769, 803, 1283
HpyCH4III ACNGT 6 cut(s) 532, 541, 940, 1022, 1092, 1132
HpyCH4IV ACGT 2 cut(s) 76, 87
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 892, 1448, 1499
HpySE526I ACGT 2 cut(s) 76, 87
Hsp92II CATG 9 cut(s) 126, 158, 346, 596, 614, 1066, 1172, 1210, 1957
HspAI GCGC 4 cut(s) 118, 120, 686, 884
KroI GCCGGC 1 cut(s) 955
KroNI GCCGGC 1 cut(s) 957
Ksp22I TGATCA 2 cut(s) 700, 1149
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
LmnI GCTCC 2 cut(s) 217, 1448
Lsp1109I GCAGC 1 cut(s) 1514
LweI GCATC 5 cut(s) 388, 894, 1104, 1302, 1327
MabI ACCWGGT 1 cut(s) 1642
MaeI CTAG 4 cut(s) 663, 945, 1388, 1605
MaeII ACGT 2 cut(s) 76, 87
MaeIII GTNAC 6 cut(s) 526, 708, 940, 1237, 1541, 1570
MalI GATC 6 cut(s) 267, 702, 1151, 1320, 1344, 1809
MboI GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
MboII GAAGA 6 cut(s) 58, 215, 1403, 1601, 1765, 1826
MhlI GDGCHC 4 cut(s) 82, 202, 646, 1476
MluCI AATT 5 cut(s) 99, 574, 1231, 1896, 1912
MlyI GAGTC 8 cut(s) 40, 920, 1223, 1316, 1638, 1683, 1822, 1898
MmeI TCCRAC 2 cut(s) 1065, 1584
Mph1103I ATGCAT 1 cut(s) 1170
MroNI GCCGGC 1 cut(s) 955
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 5 cut(s) 5, 743, 921, 1736, 1908
MslI CAYNNNNRTG 5 cut(s) 436, 597, 1173, 1479, 2013
MspI CCGG 5 cut(s) 63, 407, 956, 1118, 1218
MspR9I CCNGG 3 cut(s) 1219, 1539, 1644
Mva1269I GAATGC 1 cut(s) 1422
MvaI CCWGG 2 cut(s) 1539, 1644
MvnI CGCG 3 cut(s) 120, 151, 1276
MwoI GCNNNNNNNGC 4 cut(s) 63, 892, 1448, 1499
NaeI GCCGGC 1 cut(s) 957
NciI CCSGG 1 cut(s) 1219
NcoI CCATGG 1 cut(s) 342
NdeII GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
NgoMIV GCCGGC 1 cut(s) 955
NlaIII CATG 9 cut(s) 126, 158, 346, 596, 614, 1066, 1172, 1210, 1957
NlaIV GGNNCC 4 cut(s) 41, 128, 1428, 1462
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 2 cut(s) 526, 708
NsiI ATGCAT 1 cut(s) 1170
NspI RCATGY 1 cut(s) 1210
PauI GCGCGC 1 cut(s) 118
PceI AGGCCT 2 cut(s) 248, 1397
PciI ACATGT 1 cut(s) 1206
PctI GAATGC 1 cut(s) 1422
PdiI GCCGGC 1 cut(s) 957
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 5 cut(s) 49, 301, 589, 928, 1991
PflFI GACNNNGTC 1 cut(s) 532
PkrI GCNGC 2 cut(s) 1278, 1504
PleI GAGTC 8 cut(s) 39, 919, 1222, 1315, 1637, 1682, 1822, 1897
PpsI GAGTC 8 cut(s) 39, 919, 1222, 1315, 1637, 1682, 1822, 1897
Ppu21I YACGTR 1 cut(s) 88
PscI ACATGT 1 cut(s) 1206
Psp124BI GAGCTC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 1537, 1642
PspGI CCWGG 2 cut(s) 1537, 1642
PspN4I GGNNCC 4 cut(s) 41, 128, 1428, 1462
PspPI GGNCC 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 886
PsyI GACNNNGTC 1 cut(s) 532
PteI GCGCGC 1 cut(s) 118
RsaI GTAC 1 cut(s) 1067
RsaNI GTAC 1 cut(s) 1066
RseI CAYNNNNRTG 5 cut(s) 436, 597, 1173, 1479, 2013
SacI GAGCTC 1 cut(s) 202
SalI GTCGAC 2 cut(s) 535, 1383
SaqAI TTAA 5 cut(s) 5, 743, 921, 1736, 1908
SatI GCNGC 2 cut(s) 1277, 1503
Sau3AI GATC 6 cut(s) 265, 700, 1149, 1318, 1342, 1807
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 8 cut(s) 40, 920, 1223, 1316, 1638, 1683, 1822, 1898
ScrFI CCNGG 3 cut(s) 1219, 1539, 1644
SduI GDGCHC 4 cut(s) 82, 202, 646, 1476
SexAI ACCWGGT 1 cut(s) 1642
SfaNI GCATC 5 cut(s) 388, 894, 1104, 1302, 1327
SfcI CTRYAG 1 cut(s) 1465
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 5 cut(s) 436, 597, 1173, 1479, 2013
SpeI ACTAGT 1 cut(s) 944
Sse9I AATT 5 cut(s) 99, 574, 1231, 1896, 1912
SseBI AGGCCT 2 cut(s) 248, 1397
SsiI CCGC 5 cut(s) 82, 254, 388, 524, 1276
SspMI CTAG 4 cut(s) 663, 945, 1388, 1605
SstI GAGCTC 1 cut(s) 202
StuI AGGCCT 2 cut(s) 248, 1397
StyD4I CCNGG 3 cut(s) 1217, 1537, 1642
StyI CCWWGG 2 cut(s) 243, 342
TaaI ACNGT 6 cut(s) 532, 541, 940, 1022, 1092, 1132
TaiI ACGT 2 cut(s) 79, 90
TaqI TCGA 3 cut(s) 396, 536, 1384
TasI AATT 5 cut(s) 99, 574, 1231, 1896, 1912
TauI GCSGC 1 cut(s) 1279
TfiI GAWTC 5 cut(s) 49, 301, 589, 928, 1991
Tru1I TTAA 5 cut(s) 5, 743, 921, 1736, 1908
Tru9I TTAA 5 cut(s) 5, 743, 921, 1736, 1908
TscAI CASTG 4 cut(s) 59, 286, 646, 1252
TseFI GTSAC 2 cut(s) 526, 708
TseI GCWGC 1 cut(s) 1502
Tsp45I GTSAC 2 cut(s) 526, 708
TspDTI ATGAA 8 cut(s) 309, 581, 989, 1043, 1051, 1302, 1722, 1983
TspGWI ACGGA 2 cut(s) 658, 1799
TspRI CASTG 4 cut(s) 59, 286, 646, 1252
Tth111I GACNNNGTC 1 cut(s) 532
VneI GTGCAC 2 cut(s) 642, 1472
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 3 cut(s) 99, 574, 1912
XceI RCATGY 1 cut(s) 1210
XcmI CCANNNNNNNNNTGG 4 cut(s) 152, 1650, 1951, 2015
XmiI GTMKAC 3 cut(s) 536, 1384, 1677
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 4 cut(s) 663, 945, 1388, 1605
Zsp2I ATGCAT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.