Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Reverse (-)

36183006 .. 36183528

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAATCACTTGGTAGAAGGATTGCTCCTTCCAATCTTTACACTTAAGAGACGTGGGCTACTCAGGGAAGCTATAAACCTTTACACTTCACTCAGATCTCGGAACATTGCTCCTGACAATCTTCTGCTTCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTAATCTCAGAAAAGCAACAGAGCTTCGTGATGAGGCAATTCGGTTCGGGTTTCATTTGGATATTGCTTTGGGCAATGCCATGGTTGAAATGTCTGGGAAGTGTATGTTGATGGGGCAGGGGTGTGGGCTGCCCAGGCAGGGTTTGGTGGCGTTTAGAGAGATGGGTTTGATTGAAGTGAGACCCAATGCTGTGATGGTGTCGATGATCTTGCATGCTTGCTCTGAGTTGAGGGATTTGAACTCGGGATCAATTCATCATCGAGATGTTCATGATGAAATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

149

Amino Acids

16.41

Weight (kDa)

7.77

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	248, 335, 400
AjiI	CACGTC	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	71, 184
AluI	AGCT	2 cut(s)	71, 184
Alw26I	GTCTC	2 cut(s)	43, 334
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	403
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	3 cut(s)	265, 316, 349
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	43, 334
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	403
BmgBI	CACGTC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	141, 240, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse3DI	GCAATG	2 cut(s)	105, 241
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	141, 240, 293
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	2 cut(s)	105, 241
BseMII	CTCAG	4 cut(s)	76, 106, 181, 375
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	43, 334
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	95, 366, 407
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	4 cut(s)	75, 105, 180, 376
BspHI	TCATGA	1 cut(s)	430
BspPI	GGATC	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	105, 241
BssECI	CCNNGG	3 cut(s)	141, 240, 293
BssMI	GATC	3 cut(s)	95, 366, 407
BssT1I	CCWWGG	2 cut(s)	141, 240
Bst2UI	CCWGG	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	375, 379
BstDEI	CTNAG	4 cut(s)	62, 92, 167, 384
BstDSI	CCRYGG	1 cut(s)	240
BstKTI	GATC	3 cut(s)	98, 369, 410
BstMAI	GTCTC	2 cut(s)	43, 334
BstMBI	GATC	3 cut(s)	95, 366, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	375, 379
CciI	TCATGA	1 cut(s)	430
CviAII	CATG	3 cut(s)	241, 374, 431
CviJI	RGCY	5 cut(s)	58, 71, 146, 184, 289
CviKI_1	RGCY	5 cut(s)	58, 71, 146, 184, 289
DdeI	CTNAG	4 cut(s)	62, 92, 167, 384
DpnI	GATC	3 cut(s)	97, 368, 409
DpnII	GATC	3 cut(s)	95, 366, 407
Eco130I	CCWWGG	2 cut(s)	141, 240
Eco147I	AGGCCT	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	141, 240
ErhI	CCWWGG	2 cut(s)	141, 240
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	3 cut(s)	244, 377, 434
FaiI	YATR	5 cut(s)	74, 242, 266, 375, 432
FatI	CATG	3 cut(s)	240, 373, 430
Fnu4HI	GCNGC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	244, 377, 434
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	4 cut(s)	95, 102, 170, 385
Hpy188III	TCNNGA	5 cut(s)	113, 188, 405, 422, 431
HpyAV	CCTTC	2 cut(s)	11, 38
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	4 cut(s)	62, 92, 167, 384
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	244, 377, 434
Kzo9I	GATC	3 cut(s)	95, 366, 407
LmnI	GCTCC	2 cut(s)	30, 115
LpnPI	CCDG	8 cut(s)	49, 126, 160, 240, 263, 280, 284, 307
Lsp1109I	GCAGC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	52
MalI	GATC	3 cut(s)	97, 368, 409
MboI	GATC	3 cut(s)	95, 366, 407
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	3 cut(s)	198, 411, 438
MnlI	CCTC	2 cut(s)	187, 384
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	95, 366, 407
NlaIII	CATG	3 cut(s)	244, 377, 434
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	95, 366, 407
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	4 cut(s)	55, 73, 81, 186
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	3 cut(s)	198, 411, 438
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	141, 240
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	362, 421
TasI	AATT	3 cut(s)	198, 411, 438
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	17, 203, 404, 419
Vha464I	CTTAAG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.