Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Forward (+)

36486433 .. 36487278

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG180700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAAGCGCTGAGAGTCCTTCGTTTCCTTCTCCAAAATCAAAGTGATCGATTCCATCATAAAATGTGCAAGCTCGCTCGATTCAAGGAACTCTTTATTGGTGGGAAAATGGCTCGTATATTGGTAGAAGGATTGCTCCTTCCAATCTTTACACTCACGAGACGTGGGCTGCTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAGCTCGGAACATTGCTCCTGACAATCTTCTGCTTCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTATTCTCAGAAAAGCAACAGAGCTTCACGATGAGGCAATTCGGTTCGGGTTTCATTTGGATATTGCTTTGGGCAATGCCATGGTTGAAATGTTTGGGAAGTGTATGTTGATGGGGCGTGGCGGGGTTTCCATGAAATGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

138

Amino Acids

15.6

Weight (kDa)

10.52

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	263, 393
AfeI	AGCGCT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	85, 359
AjiI	CACGTC	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	4 cut(s)	73, 182, 209, 295
AluI	AGCT	4 cut(s)	73, 182, 209, 295
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	154
Aor51HI	AGCGCT	1 cut(s)	9
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	63, 376
BcoDI	GTCTC	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmgBI	CACGTC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	252, 351
Bse118I	RCCGGY	1 cut(s)	411
Bse3DI	GCAATG	2 cut(s)	216, 352
BseCI	ATCGAT	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	252, 351
BseMI	GCAATG	2 cut(s)	216, 352
BseMII	CTCAG	3 cut(s)	187, 217, 292
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	2 cut(s)	263, 393
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	3 cut(s)	186, 216, 291
BspDI	ATCGAT	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	216, 352
BsrFI	RCCGGY	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	252, 351
BssMI	GATC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	252, 351
Bst2BI	CACGAG	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	71, 75
BstDEI	CTNAG	4 cut(s)	11, 173, 203, 278
BstDSI	CCRYGG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	71, 75
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	411
ClaI	ATCGAT	1 cut(s)	49
CviAII	CATG	2 cut(s)	352, 403
CviJI	RGCY	7 cut(s)	73, 113, 169, 182, 209, 257, 295
CviKI_1	RGCY	7 cut(s)	73, 113, 169, 182, 209, 257, 295
DdeI	CTNAG	4 cut(s)	11, 173, 203, 278
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	252, 351
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoT14I	CCWWGG	2 cut(s)	252, 351
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	252, 351
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	355, 406
FaiI	YATR	6 cut(s)	60, 119, 185, 353, 377, 404
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	2 cut(s)	351, 402
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	170
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	355, 406
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	15, 51, 81
HpaII	CCGG	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	206, 213, 281
Hpy188III	TCNNGA	3 cut(s)	157, 224, 299
HpyAV	CCTTC	4 cut(s)	29, 38, 122, 149
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	69
HpyF3I	CTNAG	4 cut(s)	11, 173, 203, 278
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	355, 406
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	141, 226
LpnPI	CCDG	3 cut(s)	160, 237, 271
Lsp1109I	GCAGC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	163
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	2 cut(s)	200, 298
MspI	CCGG	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	355, 406
PceI	AGGCCT	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	51, 81
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	6 cut(s)	75, 166, 184, 192, 211, 297
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	263, 393
SstI	GAGCTC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	257
StyI	CCWWGG	2 cut(s)	252, 351
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	49, 79
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	51, 81
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	17, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.