RLG00000034129

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004226
Physical Location & Seq
Reverse (-)
37107197 .. 37108481
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034129

Sequence Viewer

Length: 687 bp
ATGAATCACTTGGTAGAAGGATTGCTCCTTCCAATCTTTACACTCACGAGACGTGGGCTGCTCAGGGAAGCTATAAACCACTACACTTCACTCAGAGCTCGGAACATTGCTTCTGATAATCTTCTGCTTCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTAATCTCAGAAAAGCAACAGAGCTTCACGATGAGGCAATTCGGTTCGGGTTTAATTTGGATATTGCTTTGGGAAATGCCATAGTTGAAATGTTTGGGAAGTGTATGTTGATGGGGCGTGGTGGGGGTTTGTTGGCGTTGAGAGAGATGGGTTTGATTGGAGTGAGACCTAATGTGGTGACGGTGTCGACGATCCTACATGCTTGCTCTGAGTTGAGGGATTTGAATTCGGGATCAATTCAATCCGATGATGATGATGATGATGATGATGATGTTCATGATGAAATTGAGTTTGAGAATGATTCATTATCTTGGGAGAAATGGTCAGCATTTTTGGCAAATAAGTACTTGGAAGAAGTTGAGAAGTGCGCTACTCCTAGTTCAGTAGCTCAGAAAAAGGGCTTAGCTCATTACAAAAGGATAGCTGCTCGAAAAGCCGACGAGCTTCTGGAACAAGAGAATCAAATGCAAGATGATCAAAATAATGGAGATCAGATATGTAATGGTACGAATTATGGAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

229

Amino Acids

25.28

Weight (kDa)

4.82

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 347
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 346, 400
AcsI RAATTY 1 cut(s) 385
AfaI GTAC 2 cut(s) 506, 667
AgsI TTSAA 3 cut(s) 248, 385, 401
AjiI CACGTC 1 cut(s) 53
AluBI AGCT 7 cut(s) 71, 98, 184, 548, 566, 584, 604
AluI AGCT 7 cut(s) 71, 98, 184, 548, 566, 584, 604
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 43, 319
AlwI GGATC 2 cut(s) 346, 400
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 58, 584
ApoI RAATTY 1 cut(s) 385
AspLEI GCGC 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 349
BanII GRGCYC 1 cut(s) 100
BauI CACGAG 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 45, 571
BccI CCATC 2 cut(s) 265, 301
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 2 cut(s) 43, 319
BfaI CTAG 1 cut(s) 537
BisI GCNGC 2 cut(s) 59, 585
BlpI GCTNAGC 1 cut(s) 562
BlsI GCNGC 2 cut(s) 60, 586
BmcAI AGTACT 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 5 cut(s) 76, 106, 181, 360, 563
BseXI GCAGC 2 cut(s) 45, 571
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 43, 319
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 4 cut(s) 351, 392, 634, 649
Bsp1720I GCTNAGC 1 cut(s) 562
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 5 cut(s) 75, 105, 180, 361, 562
BspHI TCATGA 1 cut(s) 436
BspPI GGATC 2 cut(s) 346, 400
BspTNI GGTCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 4 cut(s) 351, 392, 634, 649
BssSI CACGAG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 6 cut(s) 62, 92, 167, 369, 549, 562
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 4 cut(s) 354, 395, 637, 652
BstMAI GTCTC 2 cut(s) 43, 319
BstMBI GATC 4 cut(s) 351, 392, 634, 649
BstMWI GCNNNNNNNGC 2 cut(s) 494, 593
BstNSI RCATGY 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 45, 571
BsuRI GGCC 1 cut(s) 146
BtrI CACGTC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 505, 666
CviAII CATG 2 cut(s) 359, 437
CviQI GTAC 2 cut(s) 505, 666
DdeI CTNAG 6 cut(s) 62, 92, 167, 369, 549, 562
DpnI GATC 4 cut(s) 353, 394, 636, 651
DpnII GATC 4 cut(s) 351, 392, 634, 649
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 2 cut(s) 362, 440
FaiI YATR 7 cut(s) 74, 242, 266, 360, 438, 658, 675
FatI CATG 2 cut(s) 358, 436
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 2 cut(s) 59, 585
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 59, 585
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 529
GluI GCNGC 2 cut(s) 59, 585
HaeIII GGCC 1 cut(s) 146
HhaI GCGC 1 cut(s) 530
Hin1II CATG 2 cut(s) 362, 440
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 3 cut(s) 4, 461, 619
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 8 cut(s) 95, 102, 115, 170, 370, 406, 552, 654
Hpy188III TCNNGA 5 cut(s) 46, 188, 390, 437, 608
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 2 cut(s) 352, 602
HpyAV CCTTC 2 cut(s) 11, 38
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 593
HpyF3I CTNAG 6 cut(s) 62, 92, 167, 369, 549, 562
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 2 cut(s) 362, 440
HspAI GCGC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 4 cut(s) 351, 392, 634, 649
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 3 cut(s) 49, 160, 593
Lsp1109I GCAGC 2 cut(s) 45, 571
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 337
MalI GATC 4 cut(s) 353, 394, 636, 651
MboI GATC 4 cut(s) 351, 392, 634, 649
MboII GAAGA 2 cut(s) 113, 524
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 7 cut(s) 198, 214, 385, 396, 444, 670, 678
MnlI CCTC 2 cut(s) 187, 369
MseI TTAA 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 494, 593
NdeII GATC 4 cut(s) 351, 392, 634, 649
NlaIII CATG 2 cut(s) 362, 440
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 362
PagI TCATGA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PfeI GAWTC 3 cut(s) 4, 461, 619
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 60, 586
Psp124BI GAGCTC 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 343
RsaI GTAC 2 cut(s) 506, 667
RsaNI GTAC 2 cut(s) 505, 666
SacI GAGCTC 1 cut(s) 100
SalI GTCGAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 59, 585
Sau3AI GATC 4 cut(s) 351, 392, 634, 649
ScaI AGTACT 1 cut(s) 506
SduI GDGCHC 1 cut(s) 100
SetI ASST 9 cut(s) 55, 73, 100, 186, 331, 550, 568, 586, 606
Sse9I AATT 7 cut(s) 198, 214, 385, 396, 444, 670, 678
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 537
SstI GAGCTC 1 cut(s) 100
StuI AGGCCT 1 cut(s) 146
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 347, 589
TasI AATT 7 cut(s) 198, 214, 385, 396, 444, 670, 678
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 3 cut(s) 4, 461, 619
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 58, 584
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 4 cut(s) 17, 425, 453, 456
Tth111I GACNNNGTC 1 cut(s) 343
XapI RAATTY 1 cut(s) 385
XceI RCATGY 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.