Rw5G017180

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004226
Physical Location & Seq
Forward (+)
21926909 .. 21929405
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017180.1

Sequence Viewer

Length: 2058 bp
ATGCTTTCAAAGCTACCCACGAATGTCCCATCTCACCTGAGCCTGAGGTTCTTGAAGATTCACTGCAACTCCGGCGACTTACAACGCGCCCGCCACGTGTTCGATCAAATTCCTGAACCAGACCTGCGTGCATGGACCCTGCTAATATCAGCCTACACGCGACGTGGGCTGCTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAGCTCGGAGCATTGCTCCTGACAATCTTCTGCTCCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTGATCCCAGAAAAGCTACAGAGCTTCACGACGAGGCAATTCGGTTCGGGTTTCATTTGGATGTTGCTTTGGGCAATGCCATGGTTGATATGTTTGGCAAGTGTAAGAATGTTGATGGGGCGAGGCGGGTTTTCGATGAAATGCCGAGGAAGGATGTGATTTCTTGGACATGTTTGTGTTCTTGTTATGTTCACTGTGGGCTGCCCAGGCAGGGTTTGGTGGCTTTCAGAGAGATGGGTTTGAGTGGAGTGAGACCCAATGCGGTGACGGTGTCGACGATCCTACCTGCTTGCTCTGAGTTGAGGGATTTGAATTCGGGGAGGGAGATTCATGGGTTTGTGGTGAAGCATGGAATGGGAGGGAATGTGTTTGTATGTAGTGCACTCGTGAAAGTGTATGCTAGTTGTGTGAGTATTAAGCATGCGCAGAAGGTGTTTGATAAAATGACTGAACGAGATGTTGTGTCTTGGAATGTGCTTTTGACTGCGTATTTCTCCAATGGGGAATGGGAGAAGGGTATGGCTCTGTTTTGTAGGATGAGAAATGAAGGTGTGAGATTGGATAGCGCTTCGTGGAATGCTGTGATCGGTGGGTGTTTGAATAATGGGGAAACTGAACAGGCGCTGAAAATGCTTGGGAAGATGCAAGAATCGGGGTTTAAGCCGAATCAGATAACAGTCACCAGTTTGTTGCCAGCGTGCAAAGATTTGGAGAGCTTGAGGGCAGGCAAAGAGGTTCATAGCTACATCTTTAGGAATTGTTTGATGGACGACTTGGCAAGTACAACAGCTTTGGTTTTCATGTATGCAAAATGCGGAGAGTTAGAACTTTCAAGGAGGGTGTTCAATATGATGCCTAAAAAGGACACGGTTGCTTGGAACACAATGATCATTGGAAACTCGATGCATGGGAATGGAGGAGAAGCATTGTTGCTATACAGAAACATGTTAGAATCCGGGGTGAAGCCGAATTCTATTACTTACACTGGTGTTTTGTGTGGTTGTAGTCATTCGCGGCTGGTTGATGAAGGCATCAAGGTTTTTGATTCAATGAGGGATCACTTGGTAGAACCTGATGCGGATCATTATTCGTGTTTGGTTGATGTACTTAGCCGTGCTGGTCGCGTAGAAGAGGCCTATCAGTTTATACAGAGAATGCCTATGGAACCTACTGCAGGTGCTTGGGGAGCATTGCTTGGTGCCTGTAGAGTGCATAGAAATGTGGAGTTGGCAAAAATTGCAGCAAACAGGCTGTTTGAGATCGAACCAGATAACCCTGGTAACTATGTATTGTTGTCCAACATTTTTGTTACTGCCAAAAGATGGGAAGAAGCTTCAGAAACTAGGAAGCTGATGAGGGACAGAGGAGTCACAAAAACACCAGGTTGTTCTTGGGTTCAGTTGAGAAATAGAGTCTACTCGTTTGTTGCTGGCGACAGGAGTAATGAACATAGTGAAAAGATATACAAGTTTTTGGAGGGAATGGGTGAGAAGATGAGATTGGCAGGGTTTGTGCCCAACACGGATTTTGTTCTGCAAGATGTGGATCAAGAAGAGAAAGTGGGGACTCTTTGCAACCATAGTGAGAAGCTGGCTGTTGCTTTTGCGATACTCAATTTGAATGGGGAGTCAACAATTCGGGTTTTTAAGAATTTGAGGATATGTGGAGATTGCCATAATGCCATCAAATACATGGCAAAGATAGTTGGTGTGAGGATTATAGTTAGAGATTCATTGAGGTTTCACCACTTCGATGATGGAGATTGTTCCTGTGGAGATTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

685

Amino Acids

76.59

Weight (kDa)

8.39

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 141 - 189 2.7e-06 PPR repeat family
PPR_2 PF13041 242 - 280 4.2e-08 PPR repeat family
PPR PF01535 245 - 275 7.5e-07 PPR repeat
PPR_3 PF13812 267 - 324 7.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 278 - 324 2.2e-11 PPR repeat family
PPR PF01535 281 - 310 4.1e-06 PPR repeat
PPR_2 PF13041 378 - 426 3.5e-11 PPR repeat family
PPR_long PF17177 391 - 476 3.7e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 495 - 557 7.9e-24 E motif
DYW_deaminase PF14432 593 - 685 3.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1436
AasI GACNNNNNNGTC 1 cut(s) 1637
Acc16I TGCGCA 1 cut(s) 696
Acc36I ACCTGC 3 cut(s) 132, 565, 1436
AccB1I GGYRCC 1 cut(s) 1469
AccB7I CCANNNNNTGG 1 cut(s) 1593
AccI GTMKAC 2 cut(s) 545, 1686
AccII CGCG 4 cut(s) 87, 160, 1285, 1395
AciI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
AclWI GGATC 5 cut(s) 269, 544, 1335, 1359, 1824
AcsI RAATTY 4 cut(s) 108, 583, 1240, 1921
AcuI CTGAAG 1 cut(s) 1590
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 1054, 1377
AfeI AGCGCT 1 cut(s) 838
AfiI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
AflIII ACRYGT 3 cut(s) 96, 440, 1215
AgsI TTSAA 8 cut(s) 9, 55, 583, 871, 1104, 1117, 1320, 1891
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 3 cut(s) 476, 1546, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 1754, 1786
Alw21I GWGCWC 2 cut(s) 211, 655
Alw26I GTCTC 1 cut(s) 517
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 5 cut(s) 269, 544, 1335, 1359, 1824
AlwNI CAGNNNCTG 1 cut(s) 895
Aor51HI AGCGCT 1 cut(s) 838
AoxI GGCC 2 cut(s) 255, 1404
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 3 cut(s) 169, 472, 1511
ApoI RAATTY 4 cut(s) 108, 583, 1240, 1921
AspLEI GCGC 4 cut(s) 89, 697, 839, 895
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 1228
AsuHPI GGTGA 8 cut(s) 26, 284, 547, 625, 943, 1243, 1769, 2006
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 655, 1788
BanI GGYRCC 1 cut(s) 1469
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 97
Bbv12I GWGCWC 2 cut(s) 211, 655
BbvI GCAGC 3 cut(s) 156, 459, 1523
BccI CCATC 7 cut(s) 37, 380, 499, 1030, 1587, 1961, 2021
BceAI ACGGC 1 cut(s) 1368
BciT130I CCWGG 3 cut(s) 478, 1548, 1653
BclI TGATCA 1 cut(s) 1158
BcnI CCSGG 1 cut(s) 1228
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 2 cut(s) 672, 1614
BfmI CTRYAG 3 cut(s) 288, 1443, 1474
BfoI RGCGCY 2 cut(s) 840, 896
BfuAI ACCTGC 3 cut(s) 132, 565, 1436
BisI GCNGC 4 cut(s) 170, 473, 1286, 1512
BlsI GCNGC 4 cut(s) 171, 474, 1287, 1513
Bme1390I CCNGG 4 cut(s) 478, 1228, 1548, 1653
Bme18I GGWCC 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 3 cut(s) 137, 1437, 1471
BmrFI CCNGG 4 cut(s) 478, 1228, 1548, 1653
BmsI GCATC 5 cut(s) 903, 1113, 1164, 1311, 1336
BplI GAGNNNNNCTC 2 cut(s) 205, 237
Bpu10I CCTNAGC 2 cut(s) 38, 173
BpuEI CTTGAG 1 cut(s) 1009
BpuMI CCSGG 1 cut(s) 1228
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 2 cut(s) 1350, 1815
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 6 cut(s) 252, 351, 416, 476, 1227, 1546
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 621, 651
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
Bse1I ACTGG 2 cut(s) 954, 1261
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 3 cut(s) 216, 352, 1460
Bse8I GATNNNNATC 2 cut(s) 1350, 1815
BseBI CCWGG 3 cut(s) 478, 1548, 1653
BseDI CCNNGG 6 cut(s) 252, 351, 416, 476, 1227, 1546
BseGI GGATG 3 cut(s) 337, 430, 813
BseJI GATNNNNATC 2 cut(s) 1350, 1815
BseLI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
BseMI GCAATG 3 cut(s) 216, 352, 1460
BseMII CTCAG 5 cut(s) 29, 35, 187, 217, 558
BseNI ACTGG 2 cut(s) 954, 1261
BseRI GAGGAG 3 cut(s) 230, 1203, 1650
BseSI GKGCMC 2 cut(s) 655, 1788
BseXI GCAGC 3 cut(s) 156, 459, 1523
Bsh1236I CGCG 4 cut(s) 87, 160, 1285, 1395
BshFI GGCC 2 cut(s) 257, 1406
BshNI GGYRCC 1 cut(s) 1469
BsiHKAI GWGCWC 2 cut(s) 211, 655
BsiSI CCGG 2 cut(s) 72, 1227
BslFI GGGAC 3 cut(s) 11, 1643, 1849
BslI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 3 cut(s) 11, 1643, 1849
BsmI GAATGC 2 cut(s) 853, 1431
BsnI GGCC 2 cut(s) 257, 1406
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 3 cut(s) 211, 655, 1788
Bsp143I GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
BspANI GGCC 2 cut(s) 257, 1406
BspCNI CTCAG 5 cut(s) 30, 36, 186, 216, 559
BspFNI CGCG 4 cut(s) 87, 160, 1285, 1395
BspLI GGNNCC 3 cut(s) 137, 1437, 1471
BspMAI CTGCAG 1 cut(s) 1447
BspMI ACCTGC 3 cut(s) 132, 565, 1436
BspPI GGATC 5 cut(s) 269, 544, 1335, 1359, 1824
BspT107I GGYRCC 1 cut(s) 1469
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 3 cut(s) 216, 352, 1460
BsrI ACTGG 2 cut(s) 954, 1261
BssECI CCNNGG 6 cut(s) 252, 351, 416, 476, 1227, 1546
BssMI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 2 cut(s) 252, 351
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 3 cut(s) 478, 1548, 1653
Bst4CI ACNGT 4 cut(s) 467, 541, 949, 1141
Bst6I CTCTTC 2 cut(s) 1395, 1818
BstAPI GCANNNNNTGC 1 cut(s) 1508
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 9 cut(s) 91, 129, 562, 693, 966, 970, 997, 1702, 1863
BstDEI CTNAG 6 cut(s) 38, 44, 173, 203, 567, 1379
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 1443
BstF5I GGATG 3 cut(s) 337, 430, 813
BstFNI CGCG 4 cut(s) 87, 160, 1285, 1395
BstH2I RGCGCY 2 cut(s) 840, 896
BstHHI GCGC 4 cut(s) 89, 697, 839, 895
BstKTI GATC 9 cut(s) 106, 277, 552, 858, 1161, 1330, 1354, 1533, 1819
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
BstMWI GCNNNNNNNGC 7 cut(s) 10, 72, 166, 478, 901, 1457, 1508
BstNI CCWGG 3 cut(s) 478, 1548, 1653
BstNSI RCATGY 3 cut(s) 444, 695, 1219
BstSCI CCNGG 4 cut(s) 476, 1226, 1546, 1651
BstSFI CTRYAG 3 cut(s) 288, 1443, 1474
BstSLI GKGCMC 2 cut(s) 655, 1788
BstUI CGCG 4 cut(s) 87, 160, 1285, 1395
BstV1I GCAGC 3 cut(s) 156, 459, 1523
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 257, 1406
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 3 cut(s) 337, 430, 813
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 3 cut(s) 61, 463, 1254
BveI ACCTGC 3 cut(s) 132, 565, 1436
Cac8I GCNNGC 9 cut(s) 91, 129, 562, 693, 966, 970, 997, 1702, 1863
CaiI CAGNNNCTG 1 cut(s) 895
CfoI GCGC 4 cut(s) 89, 697, 839, 895
Cfr13I GGNCC 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 1651
Csp6I GTAC 2 cut(s) 1053, 1376
CviQI GTAC 2 cut(s) 1053, 1376
DdeI CTNAG 6 cut(s) 38, 44, 173, 203, 567, 1379
DpnI GATC 9 cut(s) 105, 276, 551, 857, 1160, 1329, 1353, 1532, 1818
DpnII GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
DrdI GACNNNNNNGTC 1 cut(s) 1637
DseDI GACNNNNNNGTC 1 cut(s) 1637
Eam1104I CTCTTC 2 cut(s) 1395, 1818
EarI CTCTTC 2 cut(s) 1395, 1818
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 252, 351
Eco147I AGGCCT 2 cut(s) 257, 1406
Eco24I GRGCYC 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 838
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 1590
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 1443
EcoRI GAATTC 2 cut(s) 583, 1240
EcoRII CCWGG 3 cut(s) 476, 1546, 1651
EcoT14I CCWWGG 2 cut(s) 252, 351
EcoT22I ATGCAT 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 252, 351
FaqI GGGAC 3 cut(s) 11, 1643, 1849
FauI CCCGC 2 cut(s) 98, 390
FbaI TGATCA 1 cut(s) 1158
FblI GTMKAC 2 cut(s) 545, 1686
Fnu4HI GCNGC 4 cut(s) 170, 473, 1286, 1512
FokI GGATG 3 cut(s) 344, 437, 820
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 4 cut(s) 170, 473, 1286, 1512
FspBI CTAG 2 cut(s) 672, 1614
FspI TGCGCA 1 cut(s) 696
GlaI GCGC 4 cut(s) 88, 696, 838, 894
GluI GCNGC 4 cut(s) 170, 473, 1286, 1512
HaeII RGCGCY 2 cut(s) 840, 896
HaeIII GGCC 2 cut(s) 257, 1406
HapII CCGG 2 cut(s) 72, 1227
HhaI GCGC 4 cut(s) 89, 697, 839, 895
Hin6I GCGC 4 cut(s) 87, 695, 837, 893
HinP1I GCGC 4 cut(s) 87, 695, 837, 893
HincII GTYRAC 2 cut(s) 546, 1902
HindII GTYRAC 2 cut(s) 546, 1902
HindIII AAGCTT 1 cut(s) 1602
HpaII CCGG 2 cut(s) 72, 1227
HphI GGTGA 8 cut(s) 26, 284, 547, 625, 943, 1243, 1769, 2006
Hpy166II GTNNAC 5 cut(s) 463, 546, 653, 1687, 1902
Hpy188I TCNGA 6 cut(s) 206, 213, 500, 568, 942, 1609
Hpy188III TCNNGA 6 cut(s) 52, 113, 224, 299, 658, 1820
Hpy8I GTNNAC 5 cut(s) 463, 546, 653, 1687, 1902
Hpy99I CGWCG 3 cut(s) 165, 305, 550
HpyAV CCTTC 5 cut(s) 415, 694, 778, 812, 1292
HpyCH4III ACNGT 4 cut(s) 467, 541, 949, 1141
HpyCH4IV ACGT 2 cut(s) 96, 163
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 72, 166, 478, 901, 1457, 1508
HpyF3I CTNAG 6 cut(s) 38, 44, 173, 203, 567, 1379
HpySE526I ACGT 2 cut(s) 96, 163
HspAI GCGC 4 cut(s) 87, 695, 837, 893
Ksp22I TGATCA 1 cut(s) 1158
Kzo9I GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
LmnI GCTCC 4 cut(s) 213, 226, 243, 1457
Lsp1109I GCAGC 3 cut(s) 156, 459, 1523
LweI GCATC 5 cut(s) 903, 1113, 1164, 1311, 1336
MabI ACCWGGT 1 cut(s) 1651
MaeI CTAG 2 cut(s) 672, 1614
MaeII ACGT 2 cut(s) 96, 163
MaeIII GTNAC 5 cut(s) 535, 949, 1550, 1579, 1639
MalI GATC 9 cut(s) 105, 276, 551, 857, 1160, 1329, 1353, 1532, 1818
MboI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
MboII GAAGA 7 cut(s) 67, 224, 922, 1412, 1610, 1774, 1835
MhlI GDGCHC 3 cut(s) 211, 655, 1788
MluCI AATT 9 cut(s) 108, 309, 583, 1027, 1240, 1506, 1885, 1905, 1921
MlyI GAGTC 4 cut(s) 1647, 1692, 1831, 1907
MmeI TCCRAC 1 cut(s) 1593
Mph1103I ATGCAT 1 cut(s) 1179
MseI TTAA 3 cut(s) 687, 930, 1917
MslI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
MspI CCGG 2 cut(s) 72, 1227
MspR9I CCNGG 4 cut(s) 478, 1228, 1548, 1653
Mva1269I GAATGC 2 cut(s) 853, 1431
MvaI CCWGG 3 cut(s) 478, 1548, 1653
MvnI CGCG 4 cut(s) 87, 160, 1285, 1395
MwoI GCNNNNNNNGC 7 cut(s) 10, 72, 166, 478, 901, 1457, 1508
NciI CCSGG 1 cut(s) 1228
NcoI CCATGG 1 cut(s) 351
NdeII GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
NlaIV GGNNCC 3 cut(s) 137, 1437, 1471
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 3 cut(s) 535, 949, 1639
NsbI TGCGCA 1 cut(s) 696
NsiI ATGCAT 1 cut(s) 1179
NspI RCATGY 3 cut(s) 444, 695, 1219
PaeI GCATGC 1 cut(s) 695
PaqCI CACCTGC 1 cut(s) 1436
PceI AGGCCT 2 cut(s) 257, 1406
PciI ACATGT 2 cut(s) 440, 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 2 cut(s) 853, 1431
PfeI GAWTC 7 cut(s) 58, 598, 920, 937, 1223, 1316, 2000
PflFI GACNNNGTC 1 cut(s) 541
PflMI CCANNNNNTGG 1 cut(s) 1593
PkrI GCNGC 4 cut(s) 171, 474, 1287, 1513
PleI GAGTC 4 cut(s) 1646, 1691, 1831, 1906
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 4 cut(s) 1646, 1691, 1831, 1906
Ppu21I YACGTR 1 cut(s) 97
PscI ACATGT 2 cut(s) 440, 1215
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 3 cut(s) 476, 1546, 1651
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 3 cut(s) 476, 1546, 1651
PspN4I GGNNCC 3 cut(s) 137, 1437, 1471
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 1447
PstNI CAGNNNCTG 1 cut(s) 895
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 2 cut(s) 1054, 1377
RsaNI GTAC 2 cut(s) 1053, 1376
RseI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
SacI GAGCTC 1 cut(s) 211
SalI GTCGAC 1 cut(s) 544
SaqAI TTAA 3 cut(s) 687, 930, 1917
SatI GCNGC 4 cut(s) 170, 473, 1286, 1512
Sau3AI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 4 cut(s) 1647, 1692, 1831, 1907
ScrFI CCNGG 4 cut(s) 478, 1228, 1548, 1653
SduI GDGCHC 3 cut(s) 211, 655, 1788
SexAI ACCWGGT 1 cut(s) 1651
SfaNI GCATC 5 cut(s) 903, 1113, 1164, 1311, 1336
SfcI CTRYAG 3 cut(s) 288, 1443, 1474
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
SphI GCATGC 1 cut(s) 695
Sse9I AATT 9 cut(s) 108, 309, 583, 1027, 1240, 1506, 1885, 1905, 1921
SseBI AGGCCT 2 cut(s) 257, 1406
SsiI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
SspMI CTAG 2 cut(s) 672, 1614
SstI GAGCTC 1 cut(s) 211
StuI AGGCCT 2 cut(s) 257, 1406
StyD4I CCNGG 4 cut(s) 476, 1226, 1546, 1651
StyI CCWWGG 2 cut(s) 252, 351
TaaI ACNGT 4 cut(s) 467, 541, 949, 1141
TaiI ACGT 2 cut(s) 99, 166
TaqI TCGA 6 cut(s) 102, 405, 545, 1172, 1533, 2022
TasI AATT 9 cut(s) 108, 309, 583, 1027, 1240, 1506, 1885, 1905, 1921
TatI WGTACW 2 cut(s) 1052, 1375
TauI GCSGC 1 cut(s) 1288
TfiI GAWTC 7 cut(s) 58, 598, 920, 937, 1223, 1316, 2000
Tru1I TTAA 3 cut(s) 687, 930, 1917
Tru9I TTAA 3 cut(s) 687, 930, 1917
TscAI CASTG 3 cut(s) 68, 470, 1261
TseFI GTSAC 3 cut(s) 535, 949, 1639
TseI GCWGC 3 cut(s) 169, 472, 1511
Tsp45I GTSAC 3 cut(s) 535, 949, 1639
TspDTI ATGAA 9 cut(s) 314, 423, 590, 831, 998, 1060, 1311, 1731, 1992
TspGWI ACGGA 1 cut(s) 1808
TspRI CASTG 3 cut(s) 68, 470, 1261
Tth111I GACNNNGTC 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 1593
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 1443
XapI RAATTY 4 cut(s) 108, 583, 1240, 1921
XceI RCATGY 3 cut(s) 444, 695, 1219
XcmI CCANNNNNNNNNTGG 4 cut(s) 484, 1659, 1960, 2024
XmiI GTMKAC 2 cut(s) 545, 1686
XspI CTAG 2 cut(s) 672, 1614
Zsp2I ATGCAT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.