Rh7DG442800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004226
Physical Location & Seq
Forward (+)
62889896 .. 62893449
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG442800.1

Sequence Viewer

Length: 321 bp
ATGGGTTTGATTGGAGTGAGACCCAATGTGGTGACGGTGTTGATGATCCTGCATGCTTGCTCTGAGTTGAGGGATTTGAATTCGGGATCAATTCATCATCGAGATGTTCATGATGAAATTGAGTCGTGCGTAGCTGCAATTATTCGTAGTCTTGAAGGCCACCATGGCCCCTTGTTAAGAAAACTGTCATATTGGGTTGGTGGGTTCAGGATTCAACGGTTGCTAAATTCACTTGTAGGGTTTGGCCACCAAAGATTGGCTGTGGCTGGTCTTGGTATGTGGCGTTGGGGGTTTTTAGCTAGGTTGGGCCATTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

106

Amino Acids

11.81

Weight (kDa)

10.05

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AclWI GGATC 2 cut(s) 40, 94
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 79, 226
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 3 cut(s) 79, 155, 215
AluBI AGCT 2 cut(s) 134, 299
AluI AGCT 2 cut(s) 134, 299
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 2 cut(s) 40, 94
AoxI GGCC 4 cut(s) 157, 166, 244, 307
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 2 cut(s) 79, 226
AspS9I GGNCC 2 cut(s) 167, 307
AsuHPI GGTGA 1 cut(s) 43
BalI TGGCCA 1 cut(s) 246
BbvI GCAGC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 165
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 167, 307
BmiI GGNNCC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 4 cut(s) 159, 168, 246, 309
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 4 cut(s) 159, 168, 246, 309
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 45, 86
Bsp19I CCATGG 1 cut(s) 163
BspANI GGCC 4 cut(s) 159, 168, 246, 309
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 2 cut(s) 40, 94
BspTNI GGTCTC 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 45, 86
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 3 cut(s) 37, 186, 219
BstC8I GCNNGC 2 cut(s) 54, 58
BstDEI CTNAG 2 cut(s) 63, 318
BstDSI CCRYGG 1 cut(s) 163
BstKTI GATC 2 cut(s) 48, 89
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 45, 86
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 4 cut(s) 159, 168, 246, 309
BtgI CCRYGG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 54, 58
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 167, 307
CviAII CATG 3 cut(s) 53, 110, 164
CviJI RGCY 8 cut(s) 134, 159, 168, 246, 260, 266, 299, 309
CviKI_1 RGCY 8 cut(s) 134, 159, 168, 246, 260, 266, 299, 309
DdeI CTNAG 2 cut(s) 63, 318
DpnI GATC 2 cut(s) 47, 88
DpnII GATC 2 cut(s) 45, 86
EaeI YGGCCR 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 56, 113, 167
FaiI YATR 5 cut(s) 54, 111, 165, 190, 278
FatI CATG 3 cut(s) 52, 109, 163
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 300
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 4 cut(s) 159, 168, 246, 309
Hin1II CATG 3 cut(s) 56, 113, 167
HinfI GANTC 2 cut(s) 122, 211
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 5 cut(s) 84, 101, 110, 152, 208
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 37, 186, 219
HpyCH4V TGCA 2 cut(s) 52, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 63, 318
Hsp92II CATG 3 cut(s) 56, 113, 167
Kzo9I GATC 2 cut(s) 45, 86
LpnPI CCDG 3 cut(s) 62, 193, 252
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 47, 88
MboI GATC 2 cut(s) 45, 86
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 5 cut(s) 79, 90, 117, 138, 226
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 165
NcoI CCATGG 1 cut(s) 163
NdeII GATC 2 cut(s) 45, 86
NlaIII CATG 3 cut(s) 56, 113, 167
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 56
PaeI GCATGC 1 cut(s) 56
PagI TCATGA 1 cut(s) 109
PfeI GAWTC 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 167, 307
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 45, 86
Sau96I GGNCC 2 cut(s) 167, 307
SchI GAGTC 1 cut(s) 131
SetI ASST 3 cut(s) 136, 301, 305
SfiI GGCCNNNNNGGCC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 102
SphI GCATGC 1 cut(s) 56
Sse9I AATT 5 cut(s) 79, 90, 117, 138, 226
SspMI CTAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 37, 186, 219
TaqI TCGA 1 cut(s) 100
TasI AATT 5 cut(s) 79, 90, 117, 138, 226
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 83, 98, 129
Van91I CCANNNNNTGG 1 cut(s) 256
XapI RAATTY 2 cut(s) 79, 226
XceI RCATGY 1 cut(s) 56
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.