Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Forward (+)

14359896 .. 14360542

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1167400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTTTCAAAGCTACCCACCAATGTCCCGCCTCACCTGAGCCTTAGGTTCTTGAAGATCTATTGTAATTCTGGCGATTTACAACGTGCAAGACACGCGTTCGATCAAATTCCCGAACCAGACCTGCGTGCGTGGACCATGCTCATGTCATATCAGGCTACACGCGACATGGGTTCGTCAATTGCTAAGGCGTGTGCTGCTCTTGGTGATGTTAGAAATATTAAAGAGCTTCACAACGAAGTAATTCGATTCGGGTTTCATTCGGATGTCTCTTTGGGCAATGCAATGGTCGATATGTTTGGAAAATGTAGATATTTTGATGGGGCGAGACGGGTTTTCGATGGCATGGTGGTGAAAGATGTGGTGTCTTGGACCTCTTTGTGTTCTCGTTACATTAACCGAAGGATGCCTAGACAAGGTTTGGAGGCATTTCGCGAGATGGGGTCGAATGGAGACTGGAGTGAGACCCAGTGTAGTAACAGTTTCTTCAATCCTACCTGCTTGCTCGGAGTTGAAAGATTTGAATTTGGGAAGAGTGATTCATGGGTTTGTGGTCAGACATGGAATGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

192

Amino Acids

21.77

Weight (kDa)

8.73

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	132, 506
AccII	CGCG	3 cut(s)	98, 165, 435
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	108, 524
AfiI	CCNNNNNNNGG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	9, 55, 490, 515, 524
AluBI	AGCT	2 cut(s)	13, 229
AluI	AGCT	2 cut(s)	13, 229
Alw26I	GTCTC	4 cut(s)	274, 322, 447, 458
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	108, 524
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	135, 372
AsuHPI	GGTGA	3 cut(s)	26, 218, 364
AvaII	GGWCC	2 cut(s)	135, 372
AxyI	CCTNAGG	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	314, 335, 433
BcoDI	GTCTC	4 cut(s)	274, 322, 447, 458
BfaI	CTAG	1 cut(s)	411
BfuAI	ACCTGC	2 cut(s)	132, 506
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	135, 372
BmgT120I	GGNCC	2 cut(s)	135, 372
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	478
Bpu10I	CCTNAGC	2 cut(s)	38, 186
BsaI	GGTCTC	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	461, 469
Bse21I	CCTNAGG	1 cut(s)	44
Bse3DI	GCAATG	2 cut(s)	286, 291
BseGI	GGATG	2 cut(s)	271, 411
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	2 cut(s)	286, 291
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	461, 469
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	3 cut(s)	98, 165, 435
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	4 cut(s)	274, 322, 447, 458
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	57, 103
Bsp68I	TCGCGA	1 cut(s)	435
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	3 cut(s)	98, 165, 435
BspMI	ACCTGC	2 cut(s)	132, 506
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	286, 291
BsrI	ACTGG	2 cut(s)	461, 469
BssMI	GATC	2 cut(s)	57, 103
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	129, 503
BstDEI	CTNAG	3 cut(s)	38, 44, 186
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	271, 411
BstFNI	CGCG	3 cut(s)	98, 165, 435
BstKTI	GATC	2 cut(s)	60, 106
BstMAI	GTCTC	4 cut(s)	274, 322, 447, 458
BstMBI	GATC	2 cut(s)	57, 103
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 95, 197
BstUI	CGCG	3 cut(s)	98, 165, 435
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	271, 411
BtsIMutI	CAGTG	1 cut(s)	476
BtuMI	TCGCGA	1 cut(s)	435
BveI	ACCTGC	2 cut(s)	132, 506
Cac8I	GCNNGC	2 cut(s)	129, 503
Cfr13I	GGNCC	2 cut(s)	135, 372
CviAII	CATG	6 cut(s)	139, 145, 169, 346, 543, 561
CviJI	RGCY	4 cut(s)	13, 42, 158, 229
CviKI_1	RGCY	4 cut(s)	13, 42, 158, 229
DdeI	CTNAG	3 cut(s)	38, 44, 186
DpnI	GATC	2 cut(s)	59, 105
DpnII	GATC	2 cut(s)	57, 103
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	135, 372
Eco81I	CCTNAGG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	6 cut(s)	142, 148, 172, 349, 546, 564
FaiI	YATR	8 cut(s)	140, 146, 151, 170, 296, 347, 544, 562
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	6 cut(s)	138, 144, 168, 345, 542, 560
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	278, 418
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	478
Hin1II	CATG	6 cut(s)	142, 148, 172, 349, 546, 564
HinfI	GANTC	2 cut(s)	249, 539
HphI	GGTGA	3 cut(s)	26, 218, 364
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	265, 509, 558
Hpy188III	TCNNGA	3 cut(s)	52, 113, 434
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	89, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 95, 197
HpyF3I	CTNAG	3 cut(s)	38, 44, 186
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	6 cut(s)	142, 148, 172, 349, 546, 564
Kzo9I	GATC	2 cut(s)	57, 103
LpnPI	CCDG	8 cut(s)	50, 57, 132, 137, 140, 442, 482, 511
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	389, 476
MalI	GATC	2 cut(s)	59, 105
MboI	GATC	2 cut(s)	57, 103
MboII	GAAGA	3 cut(s)	67, 478, 544
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	5 cut(s)	67, 108, 180, 243, 524
MluI	ACGCGT	1 cut(s)	96
MnlI	CCTC	3 cut(s)	42, 385, 418
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	222, 396
MslI	CAYNNNNRTG	3 cut(s)	143, 264, 350
MunI	CAATTG	1 cut(s)	180
MvnI	CGCG	3 cut(s)	98, 165, 435
MwoI	GCNNNNNNNGC	3 cut(s)	10, 95, 197
NdeII	GATC	2 cut(s)	57, 103
NlaIII	CATG	6 cut(s)	142, 148, 172, 349, 546, 564
NruI	TCGCGA	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	249, 539
PkrI	GCNGC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	135, 372
PsuI	RGATCY	1 cut(s)	57
RruI	TCGCGA	1 cut(s)	435
RseI	CAYNNNNRTG	3 cut(s)	143, 264, 350
SaqAI	TTAA	2 cut(s)	222, 396
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	57, 103
Sau96I	GGNCC	2 cut(s)	135, 372
SetI	ASST	9 cut(s)	15, 39, 50, 88, 126, 231, 377, 421, 500
SfaNI	GCATC	1 cut(s)	396
SinI	GGWCC	2 cut(s)	135, 372
SmiMI	CAYNNNNRTG	3 cut(s)	143, 264, 350
Sse9I	AATT	5 cut(s)	67, 108, 180, 243, 524
SsiI	CCGC	1 cut(s)	29
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	5 cut(s)	102, 247, 291, 339, 446
TasI	AATT	5 cut(s)	67, 108, 180, 243, 524
TfiI	GAWTC	2 cut(s)	249, 539
Tru1I	TTAA	2 cut(s)	222, 396
Tru9I	TTAA	2 cut(s)	222, 396
TscAI	CASTG	1 cut(s)	476
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	248, 531
TspRI	CASTG	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	135, 372
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	2 cut(s)	108, 524
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.