Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Forward (+)

83292066 .. 83294171

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG488400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGATCAAGAAGCAGTGCGCCTCGATCCCTGATGCGATGAGGCGTTACCACACGCACAGGGTGGGCCCTGACAAGTGCCGCTCCACTGTGACGCAGGATATCGCTGCTCCTGTCTCCACTATGTGGTCGATGGTCCGGTCAAGCGCATCGACAAGCCCCAAGCCTACAAGTACTTTGTCAAGAGCTGCCACATCATCATTGGGGACGGCAAGGTCAGCACCCTCCATGAGGTTCAGGTCATCTCAGGCTTCTGGCCAACAGCAGCACGGAGAGGTTGGATGTGCTAGACGAGGGGAGCCAAGTCATCAGCTTCGGCATGAAGGATTGCTCCTTCCAATCTTTACACTCACGAGACGTGGGCTACTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAGCTCGGAACATTGCTCCTGACAATCTTCTGCTTCTCTTTGTTGCCAAGGCCCGTGCGGTTTTGGGTAATCTCAGAAAAGCAACAGAGTTTCACGATGAGGCAATTCGGTTCGGGTTTCATTTGGATATTGCCCAGGCAGGGTTTGTTGGCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

185

Amino Acids

20.31

Weight (kDa)

11.16

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	2 cut(s)	82, 458
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	256
AdeI	CACNNNGTG	2 cut(s)	64, 126
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	126, 231, 540
AjiI	CACGTC	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	4 cut(s)	188, 313, 377, 404
AluI	AGCT	4 cut(s)	188, 313, 377, 404
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	121, 349
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	3 cut(s)	67, 256, 450
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	107, 188, 265
AspLEI	GCGC	2 cut(s)	23, 149
AspS9I	GGNCC	4 cut(s)	67, 68, 136, 451
AvaII	GGWCC	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	71, 406
BauI	CACGAG	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	94, 175, 277
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	536
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	121, 349
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	4 cut(s)	82, 108, 189, 266
BlsI	GCNGC	4 cut(s)	83, 109, 190, 267
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	359
BmgT120I	GGNCC	4 cut(s)	67, 68, 136, 451
BmiI	GGNNCC	2 cut(s)	69, 300
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	25, 158
BsaJI	CCNNGG	2 cut(s)	447, 534
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 231, 540
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	447, 534
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	3 cut(s)	126, 231, 540
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	4 cut(s)	260, 382, 412, 487
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	94, 175, 277
BshFI	GGCC	3 cut(s)	69, 258, 452
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	126, 231, 540
BsmAI	GTCTC	2 cut(s)	121, 349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	69, 258, 452
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 406
Bsp143I	GATC	2 cut(s)	6, 27
BspACI	CCGC	2 cut(s)	82, 458
BspANI	GGCC	3 cut(s)	69, 258, 452
BspCNI	CTCAG	4 cut(s)	259, 381, 411, 486
BspLI	GGNNCC	2 cut(s)	69, 300
BspPI	GGATC	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	447, 534
BssMI	GATC	2 cut(s)	6, 27
BssSI	CACGAG	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	91
BstDEI	CTNAG	4 cut(s)	246, 368, 398, 473
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	23, 149
BstKTI	GATC	2 cut(s)	9, 30
BstMAI	GTCTC	2 cut(s)	121, 349
BstMBI	GATC	2 cut(s)	6, 27
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	94, 175, 277
BsuRI	GGCC	3 cut(s)	69, 258, 452
BtgZI	GCGATG	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 87
CfoI	GCGC	2 cut(s)	23, 149
Cfr13I	GGNCC	4 cut(s)	67, 68, 136, 451
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	229, 320
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	246, 368, 398, 473
DpnI	GATC	2 cut(s)	8, 29
DpnII	GATC	2 cut(s)	6, 27
DraIII	CACNNNGTG	2 cut(s)	64, 126
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	2 cut(s)	71, 406
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	71, 406
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	2 cut(s)	232, 323
FaiI	YATR	4 cut(s)	125, 230, 321, 380
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	228, 319
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	82, 108, 189, 266
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	2 cut(s)	71, 406
Fsp4HI	GCNGC	4 cut(s)	82, 108, 189, 266
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	22, 148
GluI	GCNGC	4 cut(s)	82, 108, 189, 266
HaeIII	GGCC	3 cut(s)	69, 258, 452
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	23, 149
Hin1II	CATG	2 cut(s)	232, 323
Hin6I	GCGC	2 cut(s)	21, 147
HinP1I	GCGC	2 cut(s)	21, 147
HpaII	CCGG	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	401, 408, 476
Hpy188III	TCNNGA	5 cut(s)	10, 183, 352, 419, 494
HpyAV	CCTTC	2 cut(s)	317, 344
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	246, 368, 398, 473
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	232, 323
HspAI	GCGC	2 cut(s)	21, 147
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	6, 27
LmnI	GCTCC	5 cut(s)	89, 115, 298, 336, 421
Lsp1109I	GCAGC	3 cut(s)	94, 175, 277
LweI	GCATC	2 cut(s)	25, 158
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	47, 91
MalI	GATC	2 cut(s)	8, 29
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	6, 27
MboII	GAAGA	1 cut(s)	419
MhlI	GDGCHC	2 cut(s)	71, 406
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	1 cut(s)	504
MluNI	TGGCCA	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	8 cut(s)	34, 36, 225, 235, 268, 287, 395, 493
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	2 cut(s)	6, 27
NlaIII	CATG	2 cut(s)	232, 323
NlaIV	GGNNCC	2 cut(s)	69, 300
NmuCI	GTSAC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	83, 109, 190, 267
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	69, 300
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	4 cut(s)	67, 68, 136, 451
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	406
SatI	GCNGC	4 cut(s)	82, 108, 189, 266
Sau3AI	GATC	2 cut(s)	6, 27
Sau96I	GGNCC	4 cut(s)	67, 68, 136, 451
ScaI	AGTACT	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	71, 406
SfaNI	GCATC	2 cut(s)	25, 158
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	2 cut(s)	82, 458
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	26, 131, 152
TasI	AATT	1 cut(s)	504
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	23, 94
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	107, 188, 265
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	336, 509
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	23, 94
Van91I	CCANNNNNTGG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.