RchiOBHm_Chr5g0026861

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004226
Physical Location & Seq
Forward (+)
20849614 .. 20851955
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30644

Sequence Viewer

Length: 2058 bp
ATGCTTTCAAAGCTACCCACGAATGTCCCATCTCACCTGAGCCTGAGGTTCTTGAAGATTCACTGTAACTCCGGTGATCTACAACGTGCCCGCCAGGTGTTCGATCAAATTCCTGAACCAGACCTGCGTGCATGGACCCTGCTAATATCGGCCTACACGCGACGTGGGCTGCTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAGCCCGGAACATTGCTCCTGACAATCTTCTGATCCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTGATCCCAGAAAAGCTACAGAGCTTCACGACGAGGCGATTCGGTTCGGGTTTCATTTGGATGTTGCTTTGGGCAATGCCATGGTTGATATGTTTGGGAAGTGTAAGAATGTTGATGGGGCGAGGCGGGTTTTCGATGAAATGCCGAGGAAGGATGTGATTTCTTGGACATGTTTGTGTTCTTGTTATGTTCACTGTGGGATGCCCAGGCAGGGTTTGGTGGCTTTCAGAGAGATGGGTCTGAGTGGAGTGAGACCCAATGCGGTGACGGTGTCGACGATCCTACCTGCTTGCTCTGAGTTGAGGGATTTGAATTCGGGGAGGGAGATTCATGGGTTTGTGGTGAAGCATGGAATGGGAGGGAATGTGTTTGTAAGCAGTGCACTCGTCAAAGTGTATGCTAGTTGTGTGAGTATTAAGCATGCGCACCAGGTGTTTGATAAAATGTCTGAACGAGATGTTGTGTCTTGGAATGTGCTTTTGACTGCGTATTTCTCCAATGGGGAATGGGAGAAGGGTATGGCTCTGTTTTGTAGGATGAGAAATGAAGGTGTGAGATTGGATGGCGCTTCGTGGAATGCTGTGATCTGTGGGTGTTTGAATAATGGGGAAACTGAACAGGCGCTGAAAATGCTTGGGAAGATGCAAGAGTCGGGGTTTAAGCCGAATCAGATAACAGTCACCAGTTTGTTGCCGGCGTGCAAAGATTTGGAGAGCTTGAGGGCAGGCAAAGAGGTTCATAGCTACATCTTTAGGAATTGTTTGATGGACGACTTGGCAAGTACAACAGCTTTGGTTTTCATGTATGCAAAATGCGGAGAGTTGGAACTTTCAAGGAGGGTGTTCAATATGATGCCGAAAAAGGACACGGTTGCTTGGAACACAATGATCATTGGAAACTCGATGCATGGGAATGGAGGAGAAGCATTGTTGCTATACAGAAACATGTTAGAATCCGGGGTGAAGCCGAATTCTGTTACTTACACTGGTGTTTTGTGTGGTTGTAGTCATTCGCGGCTGGTTGATGAAGGCATCAAGGTTTTTTATTCAATGAGGGATCACTTGGTAGAACCTGATGCGGATCATTATTCGTGTTTGGTTGATGTACTTAGCCGTGCTGGTCGCGTAGAAGAGGCCTATCAGTTTATACAGAGAATGCCTATGGAACCTACTGCAGGTGCTTGGGGAGCATTGCTTGGTGCCTGTAGAGTGCATAGAAATGTGGAGTTGGCAAAAATCGCAGCAAGCCGGCTGTTTGAGATCGAACCAGATAACCCTGGTAACTATGTATTGTTGTCCAACATTTTTGTTACTGCCAAAAGATGGGAAGAAGCTTCAGAAACTAGGAAGCTGATGAGGGACAGAGGAGTCACAAAAACACCAGGTTGTTCTTGGGTTCAGTTGAGAAATAGAGTCTACTCGTTTGTTGCTGGCGACAGGAGTAATGAAAATAGTGAAAAGATATACAAGTTTTTGGAGGGAATGGGTGAGAAGATGAGATTGGCAGGGTTTGTGCCCAACACGGATTTTGTTCTGCAAGATGTGGATCAAGAAGAGAAAGTGGGGACTCTTTGCAACCATAGTGAGAAGCTGGCTGTTGCTTTTGCGATACTCAATTTGAATGGGGAGTCAACAATTCGGGTTTTTAAGAATTTGAGGATATGTGGAGATTGCCATAATGCCATCAAATACATGGCAAAGATAGTTGGTGTGAGGATTATAGTTAGAGATTCATTGAGGTTTCACCACTTCGATGATGGAGATTGTTCCTGTGGAGATTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

685

Amino Acids

76.61

Weight (kDa)

8.39

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 141 - 189 1e-06 PPR repeat family
PPR_2 PF13041 242 - 278 1.2e-07 PPR repeat family
PPR PF01535 245 - 275 7.5e-07 PPR repeat
PPR_3 PF13812 267 - 324 2.4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 281 - 324 8.2e-11 PPR repeat family
PPR PF01535 281 - 310 4.3e-06 PPR repeat
PPR_2 PF13041 378 - 426 1.8e-11 PPR repeat family
E_motif PF20431 495 - 557 3.4e-23 E motif
DYW_deaminase PF14432 593 - 685 3.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1436
AasI GACNNNNNNGTC 1 cut(s) 1637
Acc16I TGCGCA 1 cut(s) 696
Acc36I ACCTGC 3 cut(s) 132, 565, 1436
AccB1I GGYRCC 1 cut(s) 1469
AccB7I CCANNNNNTGG 1 cut(s) 1593
AccI GTMKAC 2 cut(s) 545, 1686
AccII CGCG 3 cut(s) 160, 1285, 1395
AciI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
AclWI GGATC 6 cut(s) 232, 269, 544, 1335, 1359, 1824
AcsI RAATTY 4 cut(s) 108, 583, 1240, 1921
AcuI CTGAAG 1 cut(s) 1590
AdeI CACNNNGTG 1 cut(s) 703
AfaI GTAC 2 cut(s) 1054, 1377
AfiI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
AflIII ACRYGT 2 cut(s) 440, 1215
AgsI TTSAA 8 cut(s) 9, 55, 583, 871, 1104, 1117, 1320, 1891
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 5 cut(s) 93, 476, 699, 1546, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 1754, 1786
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 1 cut(s) 517
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 6 cut(s) 232, 269, 544, 1335, 1359, 1824
AlwNI CAGNNNCTG 1 cut(s) 895
AoxI GGCC 3 cut(s) 150, 255, 1404
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 2 cut(s) 169, 1511
ApoI RAATTY 4 cut(s) 108, 583, 1240, 1921
AspLEI GCGC 3 cut(s) 697, 839, 895
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 2 cut(s) 211, 1228
AsuHPI GGTGA 9 cut(s) 26, 86, 284, 547, 625, 943, 1243, 1769, 2006
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 3 cut(s) 91, 655, 1788
BanI GGYRCC 1 cut(s) 1469
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 2 cut(s) 156, 1523
BccI CCATC 8 cut(s) 37, 380, 499, 827, 1030, 1587, 1961, 2021
BceAI ACGGC 1 cut(s) 1368
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 5 cut(s) 95, 478, 701, 1548, 1653
BclI TGATCA 1 cut(s) 1158
BcnI CCSGG 2 cut(s) 211, 1228
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 2 cut(s) 672, 1614
BfmI CTRYAG 3 cut(s) 288, 1443, 1474
BfoI RGCGCY 2 cut(s) 840, 896
BfuAI ACCTGC 3 cut(s) 132, 565, 1436
BisI GCNGC 3 cut(s) 170, 1286, 1512
BlsI GCNGC 3 cut(s) 171, 1287, 1513
Bme1390I CCNGG 7 cut(s) 95, 211, 478, 701, 1228, 1548, 1653
Bme18I GGWCC 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 3 cut(s) 137, 1437, 1471
BmrFI CCNGG 7 cut(s) 95, 211, 478, 701, 1228, 1548, 1653
BmsI GCATC 6 cut(s) 462, 903, 1113, 1164, 1311, 1336
Bpu10I CCTNAGC 2 cut(s) 38, 173
BpuEI CTTGAG 1 cut(s) 1009
BpuMI CCSGG 2 cut(s) 211, 1228
BsaBI GATNNNNATC 2 cut(s) 1350, 1815
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 6 cut(s) 252, 351, 416, 476, 1227, 1546
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 621, 651
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
Bse118I RCCGGY 2 cut(s) 964, 1518
Bse1I ACTGG 2 cut(s) 954, 1261
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 3 cut(s) 216, 352, 1460
Bse8I GATNNNNATC 2 cut(s) 1350, 1815
BseBI CCWGG 5 cut(s) 95, 478, 701, 1548, 1653
BseDI CCNNGG 6 cut(s) 252, 351, 416, 476, 1227, 1546
BseGI GGATG 5 cut(s) 337, 430, 477, 813, 838
BseJI GATNNNNATC 2 cut(s) 1350, 1815
BseLI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
BseMI GCAATG 3 cut(s) 216, 352, 1460
BseMII CTCAG 6 cut(s) 29, 35, 187, 217, 503, 558
BseNI ACTGG 2 cut(s) 954, 1261
BseRI GAGGAG 2 cut(s) 1203, 1650
BseSI GKGCMC 3 cut(s) 91, 655, 1788
BseXI GCAGC 2 cut(s) 156, 1523
Bsh1236I CGCG 3 cut(s) 160, 1285, 1395
BshFI GGCC 3 cut(s) 152, 257, 1406
BshNI GGYRCC 1 cut(s) 1469
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 5 cut(s) 72, 211, 965, 1227, 1519
BslFI GGGAC 3 cut(s) 11, 1643, 1849
BslI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 3 cut(s) 11, 1643, 1849
BsmI GAATGC 2 cut(s) 853, 1431
BsnI GGCC 3 cut(s) 152, 257, 1406
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 4 cut(s) 91, 211, 655, 1788
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
BspANI GGCC 3 cut(s) 152, 257, 1406
BspCNI CTCAG 6 cut(s) 30, 36, 186, 216, 504, 559
BspFNI CGCG 3 cut(s) 160, 1285, 1395
BspLI GGNNCC 3 cut(s) 137, 1437, 1471
BspMAI CTGCAG 1 cut(s) 1447
BspMI ACCTGC 3 cut(s) 132, 565, 1436
BspPI GGATC 6 cut(s) 232, 269, 544, 1335, 1359, 1824
BspT107I GGYRCC 1 cut(s) 1469
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 3 cut(s) 216, 352, 1460
BsrFI RCCGGY 2 cut(s) 964, 1518
BsrI ACTGG 2 cut(s) 954, 1261
BssAI RCCGGY 2 cut(s) 964, 1518
BssECI CCNNGG 6 cut(s) 252, 351, 416, 476, 1227, 1546
BssT1I CCWWGG 2 cut(s) 252, 351
Bst2UI CCWGG 5 cut(s) 95, 478, 701, 1548, 1653
Bst4CI ACNGT 5 cut(s) 65, 467, 541, 949, 1141
Bst6I CTCTTC 2 cut(s) 1395, 1818
BstDEI CTNAG 7 cut(s) 38, 44, 173, 203, 512, 567, 1379
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 1443
BstF5I GGATG 5 cut(s) 337, 430, 477, 813, 838
BstFNI CGCG 3 cut(s) 160, 1285, 1395
BstH2I RGCGCY 2 cut(s) 840, 896
BstHHI GCGC 3 cut(s) 697, 839, 895
BstMAI GTCTC 1 cut(s) 517
BstMWI GCNNNNNNNGC 5 cut(s) 10, 166, 901, 1457, 1508
BstNI CCWGG 5 cut(s) 95, 478, 701, 1548, 1653
BstNSI RCATGY 3 cut(s) 444, 695, 1219
BstSCI CCNGG 7 cut(s) 93, 209, 476, 699, 1226, 1546, 1651
BstSFI CTRYAG 3 cut(s) 288, 1443, 1474
BstSLI GKGCMC 3 cut(s) 91, 655, 1788
BstUI CGCG 3 cut(s) 160, 1285, 1395
BstV1I GCAGC 2 cut(s) 156, 1523
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 152, 257, 1406
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 5 cut(s) 337, 430, 477, 813, 838
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 4 cut(s) 61, 463, 655, 1254
BveI ACCTGC 3 cut(s) 132, 565, 1436
CaiI CAGNNNCTG 1 cut(s) 895
CfoI GCGC 3 cut(s) 697, 839, 895
Cfr10I RCCGGY 2 cut(s) 964, 1518
Cfr13I GGNCC 1 cut(s) 135
CsiI ACCWGGT 2 cut(s) 699, 1651
Csp6I GTAC 2 cut(s) 1053, 1376
CviQI GTAC 2 cut(s) 1053, 1376
DdeI CTNAG 7 cut(s) 38, 44, 173, 203, 512, 567, 1379
DraIII CACNNNGTG 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 1637
DseDI GACNNNNNNGTC 1 cut(s) 1637
Eam1104I CTCTTC 2 cut(s) 1395, 1818
EarI CTCTTC 2 cut(s) 1395, 1818
Eco130I CCWWGG 2 cut(s) 252, 351
Eco147I AGGCCT 2 cut(s) 257, 1406
Eco24I GRGCYC 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 1590
Eco81I CCTNAGG 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 1443
EcoRI GAATTC 2 cut(s) 583, 1240
EcoRII CCWGG 5 cut(s) 93, 476, 699, 1546, 1651
EcoT14I CCWWGG 2 cut(s) 252, 351
EcoT22I ATGCAT 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 252, 351
FaqI GGGAC 3 cut(s) 11, 1643, 1849
FauI CCCGC 2 cut(s) 98, 390
FbaI TGATCA 1 cut(s) 1158
FblI GTMKAC 2 cut(s) 545, 1686
Fnu4HI GCNGC 3 cut(s) 170, 1286, 1512
FokI GGATG 5 cut(s) 344, 437, 484, 820, 845
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 170, 1286, 1512
FspAI RTGCGCAY 1 cut(s) 696
FspBI CTAG 2 cut(s) 672, 1614
FspI TGCGCA 1 cut(s) 696
GlaI GCGC 3 cut(s) 696, 838, 894
GluI GCNGC 3 cut(s) 170, 1286, 1512
HaeII RGCGCY 2 cut(s) 840, 896
HaeIII GGCC 3 cut(s) 152, 257, 1406
HapII CCGG 5 cut(s) 72, 211, 965, 1227, 1519
HhaI GCGC 3 cut(s) 697, 839, 895
Hin6I GCGC 3 cut(s) 695, 837, 893
HinP1I GCGC 3 cut(s) 695, 837, 893
HincII GTYRAC 2 cut(s) 546, 1902
HindII GTYRAC 2 cut(s) 546, 1902
HindIII AAGCTT 1 cut(s) 1602
HpaII CCGG 5 cut(s) 72, 211, 965, 1227, 1519
HphI GGTGA 9 cut(s) 26, 86, 284, 547, 625, 943, 1243, 1769, 2006
Hpy166II GTNNAC 5 cut(s) 463, 546, 653, 1687, 1902
Hpy188I TCNGA 8 cut(s) 206, 237, 500, 513, 568, 721, 942, 1609
Hpy188III TCNNGA 5 cut(s) 52, 113, 224, 299, 1820
Hpy8I GTNNAC 5 cut(s) 463, 546, 653, 1687, 1902
Hpy99I CGWCG 3 cut(s) 165, 305, 550
HpyAV CCTTC 4 cut(s) 415, 778, 812, 1292
HpyCH4III ACNGT 5 cut(s) 65, 467, 541, 949, 1141
HpyCH4IV ACGT 2 cut(s) 85, 163
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 166, 901, 1457, 1508
HpyF3I CTNAG 7 cut(s) 38, 44, 173, 203, 512, 567, 1379
HpySE526I ACGT 2 cut(s) 85, 163
HspAI GCGC 3 cut(s) 695, 837, 893
KroI GCCGGC 2 cut(s) 964, 1518
KroNI GCCGGC 2 cut(s) 966, 1520
Ksp22I TGATCA 1 cut(s) 1158
LmnI GCTCC 2 cut(s) 226, 1457
Lsp1109I GCAGC 2 cut(s) 156, 1523
LweI GCATC 6 cut(s) 462, 903, 1113, 1164, 1311, 1336
MabI ACCWGGT 2 cut(s) 699, 1651
MaeI CTAG 2 cut(s) 672, 1614
MaeII ACGT 2 cut(s) 85, 163
MaeIII GTNAC 7 cut(s) 65, 535, 949, 1246, 1550, 1579, 1639
MboII GAAGA 7 cut(s) 67, 224, 922, 1412, 1610, 1774, 1835
MhlI GDGCHC 4 cut(s) 91, 211, 655, 1788
MluCI AATT 7 cut(s) 108, 583, 1027, 1240, 1885, 1905, 1921
MlyI GAGTC 5 cut(s) 929, 1647, 1692, 1831, 1907
MmeI TCCRAC 2 cut(s) 1074, 1593
Mph1103I ATGCAT 1 cut(s) 1179
MroNI GCCGGC 2 cut(s) 964, 1518
MseI TTAA 3 cut(s) 687, 930, 1917
MslI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
MspI CCGG 5 cut(s) 72, 211, 965, 1227, 1519
MspR9I CCNGG 7 cut(s) 95, 211, 478, 701, 1228, 1548, 1653
Mva1269I GAATGC 2 cut(s) 853, 1431
MvaI CCWGG 5 cut(s) 95, 478, 701, 1548, 1653
MvnI CGCG 3 cut(s) 160, 1285, 1395
MwoI GCNNNNNNNGC 5 cut(s) 10, 166, 901, 1457, 1508
NaeI GCCGGC 2 cut(s) 966, 1520
NciI CCSGG 2 cut(s) 211, 1228
NcoI CCATGG 1 cut(s) 351
NgoMIV GCCGGC 2 cut(s) 964, 1518
NlaIV GGNNCC 3 cut(s) 137, 1437, 1471
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 3 cut(s) 535, 949, 1639
NsbI TGCGCA 1 cut(s) 696
NsiI ATGCAT 1 cut(s) 1179
NspI RCATGY 3 cut(s) 444, 695, 1219
PaeI GCATGC 1 cut(s) 695
PaqCI CACCTGC 1 cut(s) 1436
PceI AGGCCT 2 cut(s) 257, 1406
PciI ACATGT 2 cut(s) 440, 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 2 cut(s) 853, 1431
PdiI GCCGGC 2 cut(s) 966, 1520
PfeI GAWTC 6 cut(s) 58, 310, 598, 937, 1223, 2000
PflFI GACNNNGTC 1 cut(s) 541
PflMI CCANNNNNTGG 1 cut(s) 1593
PkrI GCNGC 3 cut(s) 171, 1287, 1513
PleI GAGTC 5 cut(s) 928, 1646, 1691, 1831, 1906
PpsI GAGTC 5 cut(s) 928, 1646, 1691, 1831, 1906
PscI ACATGT 2 cut(s) 440, 1215
Psp6I CCWGG 5 cut(s) 93, 476, 699, 1546, 1651
PspGI CCWGG 5 cut(s) 93, 476, 699, 1546, 1651
PspN4I GGNNCC 3 cut(s) 137, 1437, 1471
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 1447
PstNI CAGNNNCTG 1 cut(s) 895
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 2 cut(s) 1054, 1377
RsaNI GTAC 2 cut(s) 1053, 1376
RseI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
SalI GTCGAC 1 cut(s) 544
SaqAI TTAA 3 cut(s) 687, 930, 1917
SatI GCNGC 3 cut(s) 170, 1286, 1512
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 5 cut(s) 929, 1647, 1692, 1831, 1907
ScrFI CCNGG 7 cut(s) 95, 211, 478, 701, 1228, 1548, 1653
SduI GDGCHC 4 cut(s) 91, 211, 655, 1788
SexAI ACCWGGT 2 cut(s) 699, 1651
SfaNI GCATC 6 cut(s) 462, 903, 1113, 1164, 1311, 1336
SfcI CTRYAG 3 cut(s) 288, 1443, 1474
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
SphI GCATGC 1 cut(s) 695
Sse9I AATT 7 cut(s) 108, 583, 1027, 1240, 1885, 1905, 1921
SseBI AGGCCT 2 cut(s) 257, 1406
SsiI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
SspMI CTAG 2 cut(s) 672, 1614
StuI AGGCCT 2 cut(s) 257, 1406
StyD4I CCNGG 7 cut(s) 93, 209, 476, 699, 1226, 1546, 1651
StyI CCWWGG 2 cut(s) 252, 351
TaaI ACNGT 5 cut(s) 65, 467, 541, 949, 1141
TaiI ACGT 2 cut(s) 88, 166
TaqI TCGA 6 cut(s) 102, 405, 545, 1172, 1533, 2022
TasI AATT 7 cut(s) 108, 583, 1027, 1240, 1885, 1905, 1921
TatI WGTACW 2 cut(s) 1052, 1375
TauI GCSGC 1 cut(s) 1288
TfiI GAWTC 6 cut(s) 58, 310, 598, 937, 1223, 2000
Tru1I TTAA 3 cut(s) 687, 930, 1917
Tru9I TTAA 3 cut(s) 687, 930, 1917
TscAI CASTG 4 cut(s) 68, 470, 655, 1261
TseFI GTSAC 3 cut(s) 535, 949, 1639
TseI GCWGC 2 cut(s) 169, 1511
Tsp45I GTSAC 3 cut(s) 535, 949, 1639
TspDTI ATGAA 9 cut(s) 314, 423, 590, 831, 998, 1060, 1311, 1731, 1992
TspGWI ACGGA 1 cut(s) 1808
TspRI CASTG 4 cut(s) 68, 470, 655, 1261
Tth111I GACNNNGTC 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 1593
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 1443
XapI RAATTY 4 cut(s) 108, 583, 1240, 1921
XceI RCATGY 3 cut(s) 444, 695, 1219
XcmI CCANNNNNNNNNTGG 4 cut(s) 484, 1659, 1960, 2024
XmiI GTMKAC 2 cut(s) 545, 1686
XspI CTAG 2 cut(s) 672, 1614
Zsp2I ATGCAT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.