Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Reverse (-)

73410802 .. 73414473

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATAGAGACCACAGTGCTCACCACGATATCAACTATTGAAGCTTCAACAGAGTGGGGGTTGATTGATAGAGGTTCTGGGCAGTTGGTTGGGCTGATTGGGGAAAACGGTGGAGCTGCAGACGCTAAAAATCTACGGGTGAAGTTATTAAGTCACTGTGGGAAATGCACATGGATTGAAATTTTCTACTTACTCTGCTCTGGTTTTGTAGTGCTTTTCAAGGAATTCATACTGGAGTTTTTATTATTATTACAACACCTGGCAGATCTTGAGGAAGTAGGCCTGAAACATCATTTAGCTGTCTGCTCAGAGAGAACATTCACTGTGGAAGTTGTACCCACGAATGTCCCATCTCACCTGAGCCTGAGGTTCTTGAAGATTCACTGCAACTCCGGCGATTTACAGCGCGCCCGCCACATGTTCGATCAAATTCCTGAACCAGACCTGCGTGCATGGACCCTGCTAATATCAGCCTACACGCGACGTGGGCTGCTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAGCTCGGAACATTGCTCCTGACAATCTTCTGCTCCTTTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTGATCCCAGAAAAGCTACAGAGCTTCACGATGAGGCAATTCACTTGGTAGAACCTGATGCAGATCATTATTCGTGCTTGGGGAGCATTGCTTGGTGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

231

Amino Acids

25.71

Weight (kDa)

5.91

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	687
AccII	CGCG	2 cut(s)	408, 481
AciI	CCGC	2 cut(s)	412, 584
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	3 cut(s)	180, 224, 429
AfaI	GTAC	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	5 cut(s)	41, 48, 179, 220, 376
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	7 cut(s)	44, 116, 299, 503, 530, 608, 616
AluI	AGCT	7 cut(s)	44, 116, 299, 503, 530, 608, 616
Alw21I	GWGCWC	2 cut(s)	21, 532
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	2 cut(s)	280, 576
ApeKI	GCWGC	2 cut(s)	116, 490
ApoI	RAATTY	3 cut(s)	180, 224, 429
AspLEI	GCGC	2 cut(s)	408, 410
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	4 cut(s)	13, 151, 347, 605
AvaII	GGWCC	1 cut(s)	456
AxyI	CCTNAGG	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	21, 532
BbvI	GCAGC	2 cut(s)	103, 477
BccI	CCATC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	2
BfmI	CTRYAG	3 cut(s)	117, 609, 692
BfuAI	ACCTGC	1 cut(s)	453
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	2 cut(s)	117, 491
BlsI	GCNGC	2 cut(s)	118, 492
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	456
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	458, 689
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	359, 494
BpuEI	CTTGAG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	537, 678
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	573
BseJI	GATNNNNATC	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	537, 678
BseMII	CTCAG	5 cut(s)	321, 350, 356, 508, 538
BseNI	ACTGG	1 cut(s)	237
BsePI	GCGCGC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	103, 477
Bsh1236I	CGCG	2 cut(s)	408, 481
BshFI	GGCC	2 cut(s)	282, 578
BshNI	GGYRCC	1 cut(s)	687
BsiHKAI	GWGCWC	2 cut(s)	21, 532
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	282, 578
Bso31I	GGTCTC	1 cut(s)	2
Bsp1286I	GDGCHC	2 cut(s)	21, 532
Bsp143I	GATC	4 cut(s)	265, 424, 595, 655
BspACI	CCGC	2 cut(s)	412, 584
BspANI	GGCC	2 cut(s)	282, 578
BspCNI	CTCAG	5 cut(s)	320, 351, 357, 507, 537
BspFNI	CGCG	2 cut(s)	408, 481
BspLI	GGNNCC	2 cut(s)	458, 689
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	687
BspTNI	GGTCTC	1 cut(s)	2
BsrDI	GCAATG	2 cut(s)	537, 678
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	573
BssHII	GCGCGC	1 cut(s)	406
BssMI	GATC	4 cut(s)	265, 424, 595, 655
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	16, 110, 158, 325
BstC8I	GCNNGC	3 cut(s)	408, 412, 450
BstDEI	CTNAG	5 cut(s)	307, 359, 365, 494, 524
BstFNI	CGCG	2 cut(s)	408, 481
BstHHI	GCGC	2 cut(s)	408, 410
BstKTI	GATC	4 cut(s)	268, 427, 598, 658
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	265, 424, 595, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 393, 487, 675
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	3 cut(s)	117, 609, 692
BstUI	CGCG	2 cut(s)	408, 481
BstV1I	GCAGC	2 cut(s)	103, 477
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	282, 578
BtrI	CACGTC	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	4 cut(s)	21, 154, 321, 382
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	3 cut(s)	408, 412, 450
CfoI	GCGC	2 cut(s)	408, 410
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	171, 418, 453
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	5 cut(s)	307, 359, 365, 494, 524
DpnI	GATC	4 cut(s)	267, 426, 597, 657
DpnII	GATC	4 cut(s)	265, 424, 595, 655
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	573
Eco147I	AGGCCT	2 cut(s)	282, 578
Eco24I	GRGCYC	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	2
Eco32I	GATATC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	174, 421, 456
FaiI	YATR	5 cut(s)	172, 230, 419, 454, 506
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	3 cut(s)	170, 417, 452
FauI	CCCGC	1 cut(s)	419
Fnu4HI	GCNGC	2 cut(s)	117, 491
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	117, 491
GlaI	GCGC	2 cut(s)	407, 409
GluI	GCNGC	2 cut(s)	117, 491
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	282, 578
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	408, 410
Hin1II	CATG	3 cut(s)	174, 421, 456
Hin6I	GCGC	2 cut(s)	406, 408
HinP1I	GCGC	2 cut(s)	406, 408
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	4 cut(s)	13, 151, 347, 605
Hpy188I	TCNGA	3 cut(s)	310, 527, 534
Hpy188III	TCNNGA	5 cut(s)	269, 373, 434, 545, 620
Hpy99I	CGWCG	1 cut(s)	486
HpyCH4III	ACNGT	4 cut(s)	16, 110, 158, 325
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	5 cut(s)	119, 168, 387, 452, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 393, 487, 675
HpyF3I	CTNAG	5 cut(s)	307, 359, 365, 494, 524
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	3 cut(s)	174, 421, 456
HspAI	GCGC	2 cut(s)	406, 408
Kzo9I	GATC	4 cut(s)	265, 424, 595, 655
LmnI	GCTCC	4 cut(s)	113, 547, 564, 675
Lsp1109I	GCAGC	2 cut(s)	103, 477
LweI	GCATC	1 cut(s)	640
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	4 cut(s)	267, 426, 597, 657
MboI	GATC	4 cut(s)	265, 424, 595, 655
MboII	GAAGA	2 cut(s)	388, 545
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	21, 532
MluCI	AATT	4 cut(s)	180, 224, 429, 630
MnlI	CCTC	5 cut(s)	65, 265, 360, 521, 619
MseI	TTAA	1 cut(s)	149
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	408, 481
MwoI	GCNNNNNNNGC	4 cut(s)	122, 393, 487, 675
NdeII	GATC	4 cut(s)	265, 424, 595, 655
NlaIII	CATG	3 cut(s)	174, 421, 456
NlaIV	GGNNCC	2 cut(s)	458, 689
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	421
PauI	GCGCGC	1 cut(s)	406
PceI	AGGCCT	2 cut(s)	282, 578
PciI	ACATGT	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	118, 492
PscI	ACATGT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	458, 689
PspPI	GGNCC	1 cut(s)	456
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	265
PteI	GCGCGC	1 cut(s)	406
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	117, 491
Sau3AI	GATC	4 cut(s)	265, 424, 595, 655
Sau96I	GGNCC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	21, 532
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	3 cut(s)	117, 609, 692
SinI	GGWCC	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	180, 224, 429, 630
SseBI	AGGCCT	2 cut(s)	282, 578
SsiI	CCGC	2 cut(s)	412, 584
SstI	GAGCTC	1 cut(s)	532
StuI	AGGCCT	2 cut(s)	282, 578
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	4 cut(s)	16, 110, 158, 325
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	423
TasI	AATT	4 cut(s)	180, 224, 429, 630
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	4 cut(s)	21, 161, 328, 389
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	116, 490
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	217
TspRI	CASTG	4 cut(s)	21, 161, 328, 389
VpaK11BI	GGWCC	1 cut(s)	456
XapI	RAATTY	3 cut(s)	180, 224, 429
XceI	RCATGY	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.