Rh5BG186400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004226
Physical Location & Seq
Forward (+)
20484965 .. 20489653
4689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG186400.1

Sequence Viewer

Length: 2172 bp
ATGCTTTCAAAGCTACCCACGAATGTCCCATCTCACCTGAGCCTGAGGTTCTTGAAGATTCACTGCAACTCCGGCGATTTACAACGCGCCCGCCACGTGTTCGATCAAATTCCTGAACCAGACCTGCGTGCATGGACCCTGTTAATATCAGCCTACACTCGACGTGGGCTTCTCAGCGAAGCTATAAACCTCTACACTTCACTCAGAGCTCGGAACATTGCTCCGGACAATCTTCTGCTTCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTGATCCCAGAAAAGCTACAGAGCTTCACGGTGAGGCAATTCGGTTCGGGTTTCATTTGGATGTTGCTTTGGGCAATGCCATGGTTGATATGTTTGGGAAGTGTAAGTATGTTGATGGGGCGAGGCGGGTTTTCGATGAAATGCCGAGGAAGGATGTGATTTCTTGGACATGTTTGTGTTCTTGTTATGTTCACTGTGGGATGCCCAGGCAGGGTTTGGTGGCTTTCAGAGAGATGGGTTTGAGTGGAGTGAGACCCAATGCGGTGACGGTGTCGACGATCCTACCTGCTTGCTCTGAGTTGAGGGATTTGAATTCGGGGAGGGAGATTCATGGGTTTGTGGTGAAGCATGGAATGGGAGGGAATGTGTTTGTAAGTAGTGCACTCGTCAAAGTGTATGCTAGTTGTGTGAGTATTAAGCACGCGCAGAAGGTGTTTGATAAAATGTCTGAACGAGATGTTGTGTCTTGGAATGTGCTTTTGACTGCGTATTTCTCCAATGGGGAATGGGAGAAGGGTATGGCTCTGTTTTGTAGGATGAGAAATGAAGGTGTGAGATTGGATGGCGCTTCGTGGAATGCTGTGATCGGTGGGTGTTTGAATAATGGGGAAACTGAACAGGCGCTGAAAATGCTTGGGAAGATGCAAGAGTCGGGGTTTAAGCCGAATCAGATAACAGTCACCAGTTTGTTGCCGGCGTGCAAAGATTTGGAGAGCTTGAGGGCAGGCAAAGAGGTTCATAGCTACATCTTTAGGAATTGTTTGATGGACGACTTGGCAAGTACAACAGCTTTGGTTTTCATGTATGCAAAATGCGGAGAGTTGGAACTTTCAAGGAGGGTGTTCAATATGATGCCGAAAAAGGACACGGTTGCTTGGAACACAATGATCATTGGAAACTCGATGCATGGGAATGGAGGAGAAGCATTGTTGCTATACAGAAACATGTTAGAATCTGGGGTGAAGCCGAATTCTGTTACATACACTGGTGTTTTGTGTGGTTGTAGTCATTCGCGGCTGGTTGATGAAGGCATCAAGATTTTTGATTCAATGAGGGATCACTTGGTAGAACCTGATGCGGATCATTATTCGTGTTTGGTTGATGTACTTAGCCGTGCTGGTCGCGTAGAAGAGGCCTATCAGTTTATACAGAGAATGCCTATGGAACCTGCTGCAGGTGCTTGGGGAGCATTGCTTGGTGCCTGTAGAGTGCATAGAAATGTGGAGTTGGCAAAAATCGCAGCAAACAGGCTGTTTGAGATCGAACCAGATAACCCTGGTAACTATGTATTGTTGTCCAACATTTTTGTTACTGCCAAAAGATGGGAAGAAGCTTCAGAAACTAGGAAGCTGATGAGGGACAGAGGAGTCACAAAAACACCAGGTTGTTCTTGGGTTCAGTTGAGAAATAGAGTCTACTCGTTTGTTGCTGGCGACAGGAGTAATGAACATAGTGAAAAGATATACAAGTTTTTGGAGGGAATGGGTGAGAAGATGAGATTGGCAGGGTTTGTGCCCAACACGGATTTTGTTCTGCAAGATGTGGATCAAGAAGAGAAAGTGGGGACTCTTTGCAACCATAGTGAGAAGCTGGCTGTTGCTTTTGCGATACTCAATTTGAATGGGGAGTCAACAATTCGGGTTTTTAAGAATTTGAGGATATGTGGAGATTGCCATAATGCCATCAAATACATGGCAAAGATAGTTGGTGTGAGGATTATAGTTAGAGATTCATTGAGGTTTCACCACTTCGATGATGGAGATTGTTCCTGTGGAGATTTCTGTCGTCAGCTCGGGGAAGTGGTTTCTCCGTCGTCAGCTTCGCCGTGGTTTCGAGTCTTGCTTCAAACACATAAGACTGCAAATTCTATAGTTTTCTACCTTCAAGAAGTTGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

723

Amino Acids

80.63

Weight (kDa)

8.38

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 141 - 189 1.1e-06 PPR repeat family
PPR_2 PF13041 242 - 278 1.3e-07 PPR repeat family
PPR PF01535 245 - 275 8e-07 PPR repeat
PPR_3 PF13812 267 - 324 2.3e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 281 - 324 9.7e-11 PPR repeat family
PPR PF01535 281 - 310 4.4e-06 PPR repeat
PPR_2 PF13041 378 - 426 2e-11 PPR repeat family
E_motif PF20431 495 - 557 8.5e-24 E motif
DYW_deaminase PF14432 593 - 684 1.4e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1436
AasI GACNNNNNNGTC 1 cut(s) 1637
Acc36I ACCTGC 4 cut(s) 132, 565, 1436, 1447
AccB1I GGYRCC 1 cut(s) 1469
AccB7I CCANNNNNTGG 1 cut(s) 1593
AccI GTMKAC 2 cut(s) 545, 1686
AccII CGCG 4 cut(s) 87, 695, 1285, 1395
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
AclWI GGATC 5 cut(s) 269, 544, 1335, 1359, 1824
AcsI RAATTY 5 cut(s) 108, 583, 1240, 1921, 2134
AcuI CTGAAG 1 cut(s) 1590
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 1054, 1377
AfiI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
AflIII ACRYGT 3 cut(s) 96, 440, 1215
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 3 cut(s) 476, 1546, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 1754, 1786
Alw21I GWGCWC 2 cut(s) 211, 655
Alw26I GTCTC 1 cut(s) 517
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 5 cut(s) 269, 544, 1335, 1359, 1824
AlwNI CAGNNNCTG 1 cut(s) 895
Ama87I CYCGRG 1 cut(s) 2063
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 2 cut(s) 255, 1404
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 2 cut(s) 1442, 1511
ApoI RAATTY 5 cut(s) 108, 583, 1240, 1921, 2134
AspLEI GCGC 4 cut(s) 89, 697, 839, 895
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 9 cut(s) 26, 284, 314, 547, 625, 943, 1243, 1769, 2006
AvaI CYCGRG 1 cut(s) 2063
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 655, 1788
BanI GGYRCC 1 cut(s) 1469
BanII GRGCYC 1 cut(s) 211
BbrPI CACGTG 1 cut(s) 97
Bbv12I GWGCWC 2 cut(s) 211, 655
BbvI GCAGC 2 cut(s) 1429, 1523
BccI CCATC 9 cut(s) 37, 380, 499, 827, 1030, 1587, 1961, 2021, 2159
BceAI ACGGC 2 cut(s) 1368, 2080
BciT130I CCWGG 3 cut(s) 478, 1548, 1653
BclI TGATCA 1 cut(s) 1158
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 3 cut(s) 672, 1614, 2170
BfmI CTRYAG 4 cut(s) 288, 1443, 1474, 2139
BfoI RGCGCY 2 cut(s) 840, 896
BfuAI ACCTGC 4 cut(s) 132, 565, 1436, 1447
BisI GCNGC 3 cut(s) 1286, 1443, 1512
BlsI GCNGC 3 cut(s) 1287, 1444, 1513
Bme1390I CCNGG 3 cut(s) 478, 1548, 1653
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 2063
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 3 cut(s) 137, 1437, 1471
BmrFI CCNGG 3 cut(s) 478, 1548, 1653
BmsI GCATC 6 cut(s) 462, 903, 1113, 1164, 1311, 1336
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 1009
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 2 cut(s) 1350, 1815
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 6 cut(s) 252, 351, 416, 476, 1546, 2096
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 621, 651
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
Bse118I RCCGGY 1 cut(s) 964
Bse1I ACTGG 2 cut(s) 954, 1261
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 3 cut(s) 216, 352, 1460
Bse8I GATNNNNATC 2 cut(s) 1350, 1815
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 3 cut(s) 478, 1548, 1653
BseDI CCNNGG 6 cut(s) 252, 351, 416, 476, 1546, 2096
BseGI GGATG 5 cut(s) 337, 430, 477, 813, 838
BseJI GATNNNNATC 2 cut(s) 1350, 1815
BseLI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
BseMI GCAATG 3 cut(s) 216, 352, 1460
BseMII CTCAG 5 cut(s) 29, 35, 187, 217, 558
BseNI ACTGG 2 cut(s) 954, 1261
BseRI GAGGAG 2 cut(s) 1203, 1650
BseSI GKGCMC 2 cut(s) 655, 1788
BseXI GCAGC 2 cut(s) 1429, 1523
Bsh1236I CGCG 4 cut(s) 87, 695, 1285, 1395
BshFI GGCC 2 cut(s) 257, 1406
BshNI GGYRCC 1 cut(s) 1469
BsiHKAI GWGCWC 2 cut(s) 211, 655
BsiHKCI CYCGRG 1 cut(s) 2063
BsiSI CCGG 3 cut(s) 72, 224, 965
BslFI GGGAC 3 cut(s) 11, 1643, 1849
BslI CCNNNNNNNGG 3 cut(s) 482, 1445, 1593
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 3 cut(s) 11, 1643, 1849
BsmI GAATGC 2 cut(s) 853, 1431
BsnI GGCC 2 cut(s) 257, 1406
Bso31I GGTCTC 1 cut(s) 517
BsoBI CYCGRG 1 cut(s) 2063
Bsp1286I GDGCHC 3 cut(s) 211, 655, 1788
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
BspANI GGCC 2 cut(s) 257, 1406
BspCNI CTCAG 5 cut(s) 30, 36, 186, 216, 559
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 4 cut(s) 87, 695, 1285, 1395
BspLI GGNNCC 3 cut(s) 137, 1437, 1471
BspMAI CTGCAG 1 cut(s) 1447
BspMI ACCTGC 4 cut(s) 132, 565, 1436, 1447
BspPI GGATC 5 cut(s) 269, 544, 1335, 1359, 1824
BspT107I GGYRCC 1 cut(s) 1469
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 3 cut(s) 216, 352, 1460
BsrFI RCCGGY 1 cut(s) 964
BsrI ACTGG 2 cut(s) 954, 1261
BssAI RCCGGY 1 cut(s) 964
BssECI CCNNGG 6 cut(s) 252, 351, 416, 476, 1546, 2096
BssMI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
BssT1I CCWWGG 2 cut(s) 252, 351
Bst2UI CCWGG 3 cut(s) 478, 1548, 1653
Bst4CI ACNGT 5 cut(s) 302, 467, 541, 949, 1141
Bst6I CTCTTC 2 cut(s) 1395, 1818
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 9 cut(s) 91, 129, 562, 693, 966, 970, 997, 1702, 1863
BstDEI CTNAG 6 cut(s) 38, 44, 173, 203, 567, 1379
BstDSI CCRYGG 2 cut(s) 351, 2096
BstENI CCTNNNNNAGG 1 cut(s) 1443
BstF5I GGATG 5 cut(s) 337, 430, 477, 813, 838
BstFNI CGCG 4 cut(s) 87, 695, 1285, 1395
BstH2I RGCGCY 2 cut(s) 840, 896
BstHHI GCGC 4 cut(s) 89, 697, 839, 895
BstKTI GATC 9 cut(s) 106, 277, 552, 858, 1161, 1330, 1354, 1533, 1819
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
BstMWI GCNNNNNNNGC 6 cut(s) 10, 72, 901, 1448, 1457, 1508
BstNI CCWGG 3 cut(s) 478, 1548, 1653
BstNSI RCATGY 2 cut(s) 444, 1219
BstSCI CCNGG 3 cut(s) 476, 1546, 1651
BstSFI CTRYAG 4 cut(s) 288, 1443, 1474, 2139
BstSLI GKGCMC 2 cut(s) 655, 1788
BstUI CGCG 4 cut(s) 87, 695, 1285, 1395
BstV1I GCAGC 2 cut(s) 1429, 1523
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 257, 1406
BtgI CCRYGG 2 cut(s) 351, 2096
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 5 cut(s) 337, 430, 477, 813, 838
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 3 cut(s) 61, 463, 1254
BveI ACCTGC 4 cut(s) 132, 565, 1436, 1447
Cac8I GCNNGC 9 cut(s) 91, 129, 562, 693, 966, 970, 997, 1702, 1863
CaiI CAGNNNCTG 1 cut(s) 895
CfoI GCGC 4 cut(s) 89, 697, 839, 895
Cfr10I RCCGGY 1 cut(s) 964
Cfr13I GGNCC 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 1651
Csp6I GTAC 2 cut(s) 1053, 1376
CviAII CATG 9 cut(s) 132, 352, 441, 602, 620, 1072, 1178, 1216, 1963
CviQI GTAC 2 cut(s) 1053, 1376
DdeI CTNAG 6 cut(s) 38, 44, 173, 203, 567, 1379
DpnI GATC 9 cut(s) 105, 276, 551, 857, 1160, 1329, 1353, 1532, 1818
DpnII GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
DrdI GACNNNNNNGTC 1 cut(s) 1637
DseDI GACNNNNNNGTC 1 cut(s) 1637
Eam1104I CTCTTC 2 cut(s) 1395, 1818
EarI CTCTTC 2 cut(s) 1395, 1818
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 252, 351
Eco147I AGGCCT 2 cut(s) 257, 1406
Eco24I GRGCYC 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 1590
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 2063
EcoICRI GAGCTC 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 1443
EcoRI GAATTC 2 cut(s) 583, 1240
EcoRII CCWGG 3 cut(s) 476, 1546, 1651
EcoT14I CCWWGG 2 cut(s) 252, 351
EcoT22I ATGCAT 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 252, 351
FaeI CATG 9 cut(s) 135, 355, 444, 605, 623, 1075, 1181, 1219, 1966
FaqI GGGAC 3 cut(s) 11, 1643, 1849
FatI CATG 9 cut(s) 131, 351, 440, 601, 619, 1071, 1177, 1215, 1962
FauI CCCGC 2 cut(s) 98, 390
FbaI TGATCA 1 cut(s) 1158
FblI GTMKAC 2 cut(s) 545, 1686
Fnu4HI GCNGC 3 cut(s) 1286, 1443, 1512
FokI GGATG 5 cut(s) 344, 437, 484, 820, 845
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 1286, 1443, 1512
FspBI CTAG 3 cut(s) 672, 1614, 2170
GlaI GCGC 4 cut(s) 88, 696, 838, 894
GluI GCNGC 3 cut(s) 1286, 1443, 1512
HaeII RGCGCY 2 cut(s) 840, 896
HaeIII GGCC 2 cut(s) 257, 1406
HapII CCGG 3 cut(s) 72, 224, 965
HhaI GCGC 4 cut(s) 89, 697, 839, 895
Hin1II CATG 9 cut(s) 135, 355, 444, 605, 623, 1075, 1181, 1219, 1966
Hin6I GCGC 4 cut(s) 87, 695, 837, 893
HinP1I GCGC 4 cut(s) 87, 695, 837, 893
HincII GTYRAC 2 cut(s) 546, 1902
HindII GTYRAC 2 cut(s) 546, 1902
HindIII AAGCTT 1 cut(s) 1602
HpaII CCGG 3 cut(s) 72, 224, 965
HphI GGTGA 9 cut(s) 26, 284, 314, 547, 625, 943, 1243, 1769, 2006
Hpy166II GTNNAC 5 cut(s) 463, 546, 653, 1687, 1902
Hpy188I TCNGA 7 cut(s) 206, 213, 500, 568, 721, 942, 1609
Hpy188III TCNNGA 6 cut(s) 52, 113, 224, 1306, 1820, 2156
Hpy8I GTNNAC 5 cut(s) 463, 546, 653, 1687, 1902
Hpy99I CGWCG 3 cut(s) 165, 550, 2086
HpyAV CCTTC 6 cut(s) 415, 694, 778, 812, 1292, 2162
HpyCH4III ACNGT 5 cut(s) 302, 467, 541, 949, 1141
HpyCH4IV ACGT 2 cut(s) 96, 163
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 72, 901, 1448, 1457, 1508
HpyF3I CTNAG 6 cut(s) 38, 44, 173, 203, 567, 1379
HpySE526I ACGT 2 cut(s) 96, 163
Hsp92II CATG 9 cut(s) 135, 355, 444, 605, 623, 1075, 1181, 1219, 1966
HspAI GCGC 4 cut(s) 87, 695, 837, 893
Kpn2I TCCGGA 1 cut(s) 223
KroI GCCGGC 1 cut(s) 964
KroNI GCCGGC 1 cut(s) 966
Ksp22I TGATCA 1 cut(s) 1158
Kzo9I GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
LmnI GCTCC 2 cut(s) 226, 1457
Lsp1109I GCAGC 2 cut(s) 1429, 1523
LweI GCATC 6 cut(s) 462, 903, 1113, 1164, 1311, 1336
MabI ACCWGGT 1 cut(s) 1651
MaeI CTAG 3 cut(s) 672, 1614, 2170
MaeII ACGT 2 cut(s) 96, 163
MaeIII GTNAC 6 cut(s) 535, 949, 1246, 1550, 1579, 1639
MalI GATC 9 cut(s) 105, 276, 551, 857, 1160, 1329, 1353, 1532, 1818
MboI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
MboII GAAGA 7 cut(s) 67, 224, 922, 1412, 1610, 1774, 1835
MhlI GDGCHC 3 cut(s) 211, 655, 1788
MluCI AATT 9 cut(s) 108, 309, 583, 1027, 1240, 1885, 1905, 1921, 2134
MlyI GAGTC 6 cut(s) 929, 1647, 1692, 1831, 1907, 2115
MmeI TCCRAC 2 cut(s) 1074, 1593
Mph1103I ATGCAT 1 cut(s) 1179
MroI TCCGGA 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 964
MseI TTAA 4 cut(s) 143, 687, 930, 1917
MslI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
MspI CCGG 3 cut(s) 72, 224, 965
MspR9I CCNGG 3 cut(s) 478, 1548, 1653
Mva1269I GAATGC 2 cut(s) 853, 1431
MvaI CCWGG 3 cut(s) 478, 1548, 1653
MvnI CGCG 4 cut(s) 87, 695, 1285, 1395
MwoI GCNNNNNNNGC 6 cut(s) 10, 72, 901, 1448, 1457, 1508
NaeI GCCGGC 1 cut(s) 966
NcoI CCATGG 1 cut(s) 351
NdeII GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
NgoMIV GCCGGC 1 cut(s) 964
NlaIII CATG 9 cut(s) 135, 355, 444, 605, 623, 1075, 1181, 1219, 1966
NlaIV GGNNCC 3 cut(s) 137, 1437, 1471
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 3 cut(s) 535, 949, 1639
NsiI ATGCAT 1 cut(s) 1179
NspI RCATGY 2 cut(s) 444, 1219
PaqCI CACCTGC 1 cut(s) 1436
PceI AGGCCT 2 cut(s) 257, 1406
PciI ACATGT 2 cut(s) 440, 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 2 cut(s) 853, 1431
PdiI GCCGGC 1 cut(s) 966
PfeI GAWTC 6 cut(s) 58, 598, 937, 1223, 1316, 2000
PflFI GACNNNGTC 1 cut(s) 541
PflMI CCANNNNNTGG 1 cut(s) 1593
PkrI GCNGC 3 cut(s) 1287, 1444, 1513
PleI GAGTC 6 cut(s) 928, 1646, 1691, 1831, 1906, 2114
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 6 cut(s) 928, 1646, 1691, 1831, 1906, 2114
Ppu21I YACGTR 1 cut(s) 97
PscI ACATGT 2 cut(s) 440, 1215
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 3 cut(s) 476, 1546, 1651
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 3 cut(s) 476, 1546, 1651
PspN4I GGNNCC 3 cut(s) 137, 1437, 1471
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 1447
PstNI CAGNNNCTG 1 cut(s) 895
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 2 cut(s) 1054, 1377
RsaNI GTAC 2 cut(s) 1053, 1376
RseI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
SacI GAGCTC 1 cut(s) 211
SalI GTCGAC 1 cut(s) 544
SaqAI TTAA 4 cut(s) 143, 687, 930, 1917
SatI GCNGC 3 cut(s) 1286, 1443, 1512
Sau3AI GATC 9 cut(s) 103, 274, 549, 855, 1158, 1327, 1351, 1530, 1816
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 6 cut(s) 929, 1647, 1692, 1831, 1907, 2115
ScrFI CCNGG 3 cut(s) 478, 1548, 1653
SduI GDGCHC 3 cut(s) 211, 655, 1788
SexAI ACCWGGT 1 cut(s) 1651
SfaNI GCATC 6 cut(s) 462, 903, 1113, 1164, 1311, 1336
SfcI CTRYAG 4 cut(s) 288, 1443, 1474, 2139
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 5 cut(s) 330, 445, 1182, 1488, 2022
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
Sse9I AATT 9 cut(s) 108, 309, 583, 1027, 1240, 1885, 1905, 1921, 2134
SseBI AGGCCT 2 cut(s) 257, 1406
SsiI CCGC 7 cut(s) 91, 263, 397, 533, 1086, 1285, 1349
SspMI CTAG 3 cut(s) 672, 1614, 2170
SstI GAGCTC 1 cut(s) 211
StuI AGGCCT 2 cut(s) 257, 1406
StyD4I CCNGG 3 cut(s) 476, 1546, 1651
StyI CCWWGG 2 cut(s) 252, 351
TaaI ACNGT 5 cut(s) 302, 467, 541, 949, 1141
TaiI ACGT 2 cut(s) 99, 166
TaqI TCGA 8 cut(s) 102, 160, 405, 545, 1172, 1533, 2022, 2104
TasI AATT 9 cut(s) 108, 309, 583, 1027, 1240, 1885, 1905, 1921, 2134
TatI WGTACW 2 cut(s) 1052, 1375
TauI GCSGC 1 cut(s) 1288
TfiI GAWTC 6 cut(s) 58, 598, 937, 1223, 1316, 2000
Tru1I TTAA 4 cut(s) 143, 687, 930, 1917
Tru9I TTAA 4 cut(s) 143, 687, 930, 1917
TscAI CASTG 3 cut(s) 68, 470, 1261
TseFI GTSAC 3 cut(s) 535, 949, 1639
TseI GCWGC 2 cut(s) 1442, 1511
Tsp45I GTSAC 3 cut(s) 535, 949, 1639
TspDTI ATGAA 9 cut(s) 314, 423, 590, 831, 998, 1060, 1311, 1731, 1992
TspGWI ACGGA 2 cut(s) 1808, 2070
TspRI CASTG 3 cut(s) 68, 470, 1261
Tth111I GACNNNGTC 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 1593
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 1443
XapI RAATTY 5 cut(s) 108, 583, 1240, 1921, 2134
XceI RCATGY 2 cut(s) 444, 1219
XcmI CCANNNNNNNNNTGG 4 cut(s) 484, 1659, 1960, 2024
XmiI GTMKAC 2 cut(s) 545, 1686
XspI CTAG 3 cut(s) 672, 1614, 2170
Zsp2I ATGCAT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.