Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Reverse (-)

34739038 .. 34739772

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTACACATTACTCATGCATGGTTGATGTGCTTAGCCGTGCTGGTCGCCTAGTAGAGGCATATCAGTTCGTACAAAGAATGCCAATGGAACCTACTCCCGGTGCTTGGGGAGCATTGCTTGGCGCGTGCAGAGTTCATAAAAATGTAGACTTAGCAAAAATTGCAGCTAACAAGCTCTTCGAGATTGAACCAGATAACCGTGGCAACTATGTGCTGTTGTCCAACATTTTAGTCACCGCCAAGCGATGGGAAGAAGCTTCAGAAACTAGGAAGTTAATGAGAGACGGAGGAATCACAAAAACACCGGGTTGTTCTTGGGTTCAGCTGAAGAATAGAGTCTACTCTTTTGTTACCGGTGATAGGAGTAACGAGCGAAGCGCGGAGATATACAAGTTTCTGATTGACATGGGTGAGAAGATGAGATTGGCAGGGCATGTCCCCAACACTGATTTTGTTCTGCAAGATGTGGATCGAGAGGAGAAAGTGGGGATCCCTTGCAACCACAGTGAGAAAATTGCTGTTGCGTTTGGGATACTCAATTTGAATGGCGAATCGACGATTCGGGTATTTAAGAATTTAAGGATACTTGGGGACTGCCGTAATGCCATCAAGTTCATGGCCAAGATTGTTGGTTTGCAGATTATTGTTAGAGATTCCTTGAGGTTTCACCATTTCAAAAATGGAGATTGTTCTTGTAGAAATTTTGGTGATTTTCGGTATCCAAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

9.17

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	47 - 109	3.3e-22	E motif
DYW_deaminase	PF14432	145 - 236	3.3e-35	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccI	GTMKAC	3 cut(s)	5, 150, 342
AccII	CGCG	2 cut(s)	128, 383
AciI	CCGC	2 cut(s)	240, 383
AclWI	GGATC	3 cut(s)	480, 487, 500
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	2 cut(s)	577, 703
AcuI	CTGAAG	2 cut(s)	246, 350
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	5 cut(s)	58, 101, 108, 249, 363
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	191, 547, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	170, 178, 260, 328
AluI	AGCT	4 cut(s)	170, 178, 260, 328
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	480, 487, 500
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	577, 703
AsiGI	ACCGGT	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	128, 383
AsuC2I	CCSGG	2 cut(s)	102, 309
AsuHPI	GGTGA	5 cut(s)	229, 371, 425, 662, 722
BalI	TGGCCA	1 cut(s)	623
BamHI	GGATCC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	243, 617
BceAI	ACGGC	2 cut(s)	24, 585
BciVI	GTATCC	3 cut(s)	528, 579, 732
BcnI	CCSGG	2 cut(s)	102, 309
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	53, 270
BfuI	GTATCC	3 cut(s)	528, 579, 732
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	102, 309
BmiI	GGNNCC	2 cut(s)	93, 494
BmrFI	CCNGG	2 cut(s)	102, 309
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	682
BpuMI	CCSGG	2 cut(s)	102, 309
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 101, 108, 249, 363
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	5 cut(s)	58, 101, 108, 249, 363
BseMI	GCAATG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	128, 383
BshFI	GGCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	102, 308, 357
BslFI	GGGAC	2 cut(s)	425, 608
BslI	CCNNNNNNNGG	5 cut(s)	58, 101, 108, 249, 363
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	425, 608
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	472, 492
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	2 cut(s)	240, 383
BspANI	GGCC	1 cut(s)	623
BspFNI	CGCG	2 cut(s)	128, 383
BspLI	GGNNCC	2 cut(s)	93, 494
BspPI	GGATC	3 cut(s)	480, 487, 500
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	472, 492
Bst4CI	ACNGT	2 cut(s)	203, 509
Bst6I	CTCTTC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	35, 154
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstFNI	CGCG	2 cut(s)	128, 383
BstHHI	GCGC	2 cut(s)	128, 383
BstKTI	GATC	2 cut(s)	475, 495
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	472, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 164
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	100, 307
BstUI	CGCG	2 cut(s)	128, 383
BstV1I	GCAGC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BsuI	GTATCC	3 cut(s)	528, 579, 732
BsuRI	GGCC	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	447, 514
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	128, 383
Cfr10I	RCCGGY	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	74
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	5 cut(s)	18, 22, 409, 437, 619
CviJI	RGCY	6 cut(s)	39, 170, 178, 260, 328, 623
CviKI_1	RGCY	6 cut(s)	39, 170, 178, 260, 328, 623
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	35, 154
DpnI	GATC	2 cut(s)	474, 494
DpnII	GATC	2 cut(s)	472, 492
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco57I	CTGAAG	2 cut(s)	246, 350
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	5 cut(s)	21, 25, 412, 440, 622
FaiI	YATR	9 cut(s)	19, 23, 64, 141, 213, 391, 410, 438, 620
FaqI	GGGAC	2 cut(s)	425, 608
FatI	CATG	5 cut(s)	17, 21, 408, 436, 618
FblI	GTMKAC	3 cut(s)	5, 150, 342
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	53, 270
GlaI	GCGC	2 cut(s)	127, 382
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	3 cut(s)	102, 308, 357
HhaI	GCGC	2 cut(s)	128, 383
Hin1II	CATG	5 cut(s)	21, 25, 412, 440, 622
Hin6I	GCGC	2 cut(s)	126, 381
HinP1I	GCGC	2 cut(s)	126, 381
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	5 cut(s)	294, 339, 554, 562, 656
HpaII	CCGG	3 cut(s)	102, 308, 357
HphI	GGTGA	5 cut(s)	229, 371, 425, 662, 722
Hpy166II	GTNNAC	3 cut(s)	6, 151, 343
Hpy188I	TCNGA	2 cut(s)	265, 402
Hpy188III	TCNNGA	2 cut(s)	184, 476
Hpy8I	GTNNAC	3 cut(s)	6, 151, 343
Hpy99I	CGWCG	1 cut(s)	562
HpyCH4III	ACNGT	2 cut(s)	203, 509
HpyCH4V	TGCA	6 cut(s)	21, 132, 167, 463, 501, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 164
HpyF3I	CTNAG	2 cut(s)	35, 154
Hsp92II	CATG	5 cut(s)	21, 25, 412, 440, 622
HspAI	GCGC	2 cut(s)	126, 381
Kzo9I	GATC	2 cut(s)	472, 492
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	6 cut(s)	30, 115, 207, 321, 370, 417
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	2 cut(s)	53, 270
MaeIII	GTNAC	3 cut(s)	235, 352, 368
MalI	GATC	2 cut(s)	474, 494
MboI	GATC	2 cut(s)	472, 492
MboII	GAAGA	4 cut(s)	172, 266, 343, 430
MflI	RGATCY	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	5 cut(s)	162, 516, 541, 577, 703
MluNI	TGGCCA	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	52, 284, 472, 657
Mox20I	TGGCCA	1 cut(s)	623
Mph1103I	ATGCAT	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	3 cut(s)	278, 573, 581
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	623
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	3 cut(s)	102, 308, 357
MspR9I	CCNGG	2 cut(s)	102, 309
Mva1269I	GAATGC	1 cut(s)	87
MvnI	CGCG	2 cut(s)	128, 383
MwoI	GCNNNNNNNGC	2 cut(s)	113, 164
NciI	CCSGG	2 cut(s)	102, 309
NdeII	GATC	2 cut(s)	472, 492
NlaIII	CATG	5 cut(s)	21, 25, 412, 440, 622
NlaIV	GGNNCC	2 cut(s)	93, 494
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	185
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	4 cut(s)	294, 554, 562, 656
PflMI	CCANNNNNTGG	1 cut(s)	249
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	93, 494
PsuI	RGATCY	1 cut(s)	492
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	278, 573, 581
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	472, 492
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	102, 309
SetI	ASST	6 cut(s)	97, 172, 180, 262, 330, 668
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
Sse9I	AATT	5 cut(s)	162, 516, 541, 577, 703
SsiI	CCGC	2 cut(s)	240, 383
SspMI	CTAG	2 cut(s)	53, 270
StyD4I	CCNGG	2 cut(s)	100, 307
TaaI	ACNGT	2 cut(s)	203, 509
TaqI	TCGA	3 cut(s)	183, 475, 557
TasI	AATT	5 cut(s)	162, 516, 541, 577, 703
TfiI	GAWTC	4 cut(s)	294, 554, 562, 656
Tru1I	TTAA	3 cut(s)	278, 573, 581
Tru9I	TTAA	3 cut(s)	278, 573, 581
TscAI	CASTG	2 cut(s)	454, 514
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	128, 607
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	454, 514
Van91I	CCANNNNNTGG	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	56
XapI	RAATTY	2 cut(s)	577, 703
XceI	RCATGY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	2 cut(s)	616, 680
XmiI	GTMKAC	3 cut(s)	5, 150, 342
XspI	CTAG	2 cut(s)	53, 270
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.