Rh5CG205600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004226
Physical Location & Seq
Forward (+)
20803110 .. 20804378
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG205600.1

Sequence Viewer

Length: 1269 bp
ATGGCTCTGTTTTGTAGGATGAGAAATGAAGGTGTGAGATTGGATGGCGCTTCGTGGAATGCTGTGATCTGTGGGTGTTTGAATAATGGGGAAACTGAACAGGCGCTGAAAATGCTTGGGAAGATGCAAGAGTCGGGGTTTAAGCCGAATCAGATAACAGTCACCAGTTTGTTGCCGGCGTGCAAAGATTTGGAGAGCTTGAGGGCAGGCAAAGAGGTTCATAGCTACATCTTTAGGAATTGTTTGATGGACGACTTGGCAAGTACAACTGCTTTGGTTTTCATGTATGCAAAATGCGGAGAGTTGGAACTTTCAAGGAGGGTGTTCAATATGATGCCGAAAAAGGACACGGTTGCTTGGAACACAATGATCATTGGAAACTCAATGCATGGGAATGGAGGAGAAGCATTGTTGCTATACAGAAACATGTTAGAATCCAGGGTGAAGCCGAATTCTGTTACTTACACTGGTGTTTTGTGTGGTTGTAGTCATTCGCGGCTGGTTGATGAAGGCATCAAGGTTTTTTATTCAATGAGGGATCACTTGGTAGAACCTGATGCGGATCATTATTCGTGTTTGGTTGATGTACTTAGCCGTGCTGGTCGCGTAGAAGAGGCCTATCAGTTTATACAGAGAATGCCTATGGAACCTACTGCAGGTGCTTGGGGAGCATTGCTTGGTGCCTGTAGAGTGCATAGAAATGTGGAGTTGGCAAAAATCGCAGCAAACAGGCTGTTTGAGATCGAACCAGATAACCCTGGTAACTATGTATTGTTGTCCAACATTTTTGTTACTGCCAAAAGATGGGAAGAAGCTTCAGAAACTAGGAAGCTGATGAGGGACAGAGGAGTCACAAAAACACCAGGTTGTTCTTGGGTTCAGTTGAGAAATAGAGTCTACTCGTTTGTTGCTGGCGACAGGAGTAATGAACATAGTGAAAAGATATACAAGTTTTTGGAGGGAATGGGTGAGAAGATGAGATTGGCAGGGTTTGTGCCCAACACGGATTTTGTTCTGCAAGATGTGGATCAAGAAGAGAAAGTGGGGACTCTTTGCAACCATAGTGAGAAGCTGGCTGTTGCTTTTGCGATACTCAATTTGAATGGGGAGTCAACAATTTGGGTTTTTAAGAATTTGAGGATATGTGGAGATTGCCATAATGCCATCAAATACATGGCAAAGATAGTTGGTGTGAGGATTATAGTTAGAGATTCATTGAGGTTTCACCACTTCGATGATGGAGATTGTTCCTGTGGAGATTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

422

Amino Acids

47.55

Weight (kDa)

7.12

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 4 - 61 1.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 18 - 61 4.4e-11 PPR repeat family
PPR PF01535 18 - 47 2.4e-06 PPR repeat
PPR_2 PF13041 115 - 163 8.1e-11 PPR repeat family
E_motif PF20431 232 - 294 4e-24 E motif
DYW_deaminase PF14432 330 - 422 2.3e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 647
AasI GACNNNNNNGTC 1 cut(s) 848
Acc36I ACCTGC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 804
AccI GTMKAC 1 cut(s) 897
AccII CGCG 2 cut(s) 496, 606
AciI CCGC 3 cut(s) 297, 496, 560
AclWI GGATC 3 cut(s) 546, 570, 1035
AcsI RAATTY 2 cut(s) 451, 1132
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 2 cut(s) 265, 588
AfiI CCNNNNNNNGG 2 cut(s) 656, 804
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 5 cut(s) 82, 315, 328, 531, 1102
AjnI CCWGG 3 cut(s) 437, 757, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AluBI AGCT 5 cut(s) 198, 225, 815, 832, 1072
AluI AGCT 5 cut(s) 198, 225, 815, 832, 1072
AlwI GGATC 3 cut(s) 546, 570, 1035
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 451, 1132
AspLEI GCGC 2 cut(s) 50, 106
AsuHPI GGTGA 4 cut(s) 154, 454, 980, 1217
BaeGI GKGCMC 1 cut(s) 999
BanI GGYRCC 1 cut(s) 680
BbvI GCAGC 1 cut(s) 734
BccI CCATC 5 cut(s) 38, 241, 798, 1172, 1232
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 3 cut(s) 439, 759, 864
BclI TGATCA 1 cut(s) 369
BfaI CTAG 1 cut(s) 825
BfmI CTRYAG 2 cut(s) 654, 685
BfoI RGCGCY 2 cut(s) 51, 107
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 2 cut(s) 497, 723
BlsI GCNGC 2 cut(s) 498, 724
Bme1390I CCNGG 3 cut(s) 439, 759, 864
BmiI GGNNCC 2 cut(s) 648, 682
BmrFI CCNGG 3 cut(s) 439, 759, 864
BmsI GCATC 4 cut(s) 114, 324, 522, 547
BpuEI CTTGAG 1 cut(s) 220
BsaBI GATNNNNATC 2 cut(s) 561, 1026
BsaJI CCNNGG 2 cut(s) 438, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 656, 804
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 165, 472
Bse3DI GCAATG 1 cut(s) 671
Bse8I GATNNNNATC 2 cut(s) 561, 1026
BseBI CCWGG 3 cut(s) 439, 759, 864
BseDI CCNNGG 2 cut(s) 438, 757
BseGI GGATG 2 cut(s) 24, 49
BseJI GATNNNNATC 2 cut(s) 561, 1026
BseLI CCNNNNNNNGG 2 cut(s) 656, 804
BseMI GCAATG 1 cut(s) 671
BseNI ACTGG 2 cut(s) 165, 472
BseRI GAGGAG 2 cut(s) 414, 861
BseSI GKGCMC 1 cut(s) 999
BseXI GCAGC 1 cut(s) 734
Bsh1236I CGCG 2 cut(s) 496, 606
BshFI GGCC 1 cut(s) 617
BshNI GGYRCC 1 cut(s) 680
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 854, 1060
BslI CCNNNNNNNGG 2 cut(s) 656, 804
BsmFI GGGAC 2 cut(s) 854, 1060
BsmI GAATGC 2 cut(s) 64, 642
BsnI GGCC 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 999
Bsp143I GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
BspACI CCGC 3 cut(s) 297, 496, 560
BspANI GGCC 1 cut(s) 617
BspFNI CGCG 2 cut(s) 496, 606
BspLI GGNNCC 2 cut(s) 648, 682
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 3 cut(s) 546, 570, 1035
BspT107I GGYRCC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 2 cut(s) 165, 472
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 438, 757
BssMI GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
Bst2UI CCWGG 3 cut(s) 439, 759, 864
Bst4CI ACNGT 2 cut(s) 160, 352
Bst6I CTCTTC 2 cut(s) 606, 1029
BstC8I GCNNGC 5 cut(s) 177, 181, 208, 913, 1074
BstDEI CTNAG 1 cut(s) 590
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 24, 49
BstFNI CGCG 2 cut(s) 496, 606
BstH2I RGCGCY 2 cut(s) 51, 107
BstHHI GCGC 2 cut(s) 50, 106
BstKTI GATC 6 cut(s) 69, 372, 541, 565, 744, 1030
BstMBI GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 112, 668, 719
BstNI CCWGG 3 cut(s) 439, 759, 864
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 3 cut(s) 437, 757, 862
BstSFI CTRYAG 2 cut(s) 654, 685
BstSLI GKGCMC 1 cut(s) 999
BstUI CGCG 2 cut(s) 496, 606
BstV1I GCAGC 1 cut(s) 734
BsuRI GGCC 1 cut(s) 617
BtsCI GGATG 2 cut(s) 24, 49
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 5 cut(s) 177, 181, 208, 913, 1074
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 2 cut(s) 50, 106
Cfr10I RCCGGY 1 cut(s) 175
CsiI ACCWGGT 1 cut(s) 862
Csp6I GTAC 2 cut(s) 264, 587
CviAII CATG 4 cut(s) 283, 389, 427, 1174
CviQI GTAC 2 cut(s) 264, 587
DdeI CTNAG 1 cut(s) 590
DpnI GATC 6 cut(s) 68, 371, 540, 564, 743, 1029
DpnII GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
DrdI GACNNNNNNGTC 1 cut(s) 848
DseDI GACNNNNNNGTC 1 cut(s) 848
Eam1104I CTCTTC 2 cut(s) 606, 1029
EarI CTCTTC 2 cut(s) 606, 1029
Eco147I AGGCCT 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 801
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 3 cut(s) 437, 757, 862
EcoT22I ATGCAT 1 cut(s) 390
FaeI CATG 4 cut(s) 286, 392, 430, 1177
FaqI GGGAC 2 cut(s) 854, 1060
FatI CATG 4 cut(s) 282, 388, 426, 1173
FbaI TGATCA 1 cut(s) 369
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 2 cut(s) 497, 723
FokI GGATG 2 cut(s) 31, 56
Fsp4HI GCNGC 2 cut(s) 497, 723
FspBI CTAG 1 cut(s) 825
GlaI GCGC 2 cut(s) 49, 105
GluI GCNGC 2 cut(s) 497, 723
HaeII RGCGCY 2 cut(s) 51, 107
HaeIII GGCC 1 cut(s) 617
HapII CCGG 1 cut(s) 176
HhaI GCGC 2 cut(s) 50, 106
Hin1II CATG 4 cut(s) 286, 392, 430, 1177
Hin6I GCGC 2 cut(s) 48, 104
HinP1I GCGC 2 cut(s) 48, 104
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HindIII AAGCTT 1 cut(s) 813
HinfI GANTC 8 cut(s) 131, 148, 434, 849, 894, 1048, 1109, 1211
HpaII CCGG 1 cut(s) 176
HphI GGTGA 4 cut(s) 154, 454, 980, 1217
Hpy166II GTNNAC 2 cut(s) 898, 1113
Hpy188I TCNGA 2 cut(s) 153, 820
Hpy188III TCNNGA 1 cut(s) 1031
Hpy8I GTNNAC 2 cut(s) 898, 1113
HpyAV CCTTC 2 cut(s) 23, 503
HpyCH4III ACNGT 2 cut(s) 160, 352
HpyCH4V TGCA 8 cut(s) 127, 183, 290, 388, 656, 694, 1018, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 668, 719
HpyF3I CTNAG 1 cut(s) 590
Hsp92II CATG 4 cut(s) 286, 392, 430, 1177
HspAI GCGC 2 cut(s) 48, 104
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 1 cut(s) 734
LweI GCATC 4 cut(s) 114, 324, 522, 547
MabI ACCWGGT 1 cut(s) 862
MaeI CTAG 1 cut(s) 825
MaeIII GTNAC 5 cut(s) 160, 457, 761, 790, 850
MalI GATC 6 cut(s) 68, 371, 540, 564, 743, 1029
MboI GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
MboII GAAGA 5 cut(s) 133, 623, 821, 985, 1046
MhlI GDGCHC 1 cut(s) 999
MluCI AATT 5 cut(s) 238, 451, 1096, 1116, 1132
MlyI GAGTC 5 cut(s) 140, 858, 903, 1042, 1118
MmeI TCCRAC 2 cut(s) 285, 804
Mph1103I ATGCAT 1 cut(s) 390
MroNI GCCGGC 1 cut(s) 175
MseI TTAA 2 cut(s) 141, 1128
MslI CAYNNNNRTG 3 cut(s) 393, 699, 1233
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 3 cut(s) 439, 759, 864
Mva1269I GAATGC 2 cut(s) 64, 642
MvaI CCWGG 3 cut(s) 439, 759, 864
MvnI CGCG 2 cut(s) 496, 606
MwoI GCNNNNNNNGC 3 cut(s) 112, 668, 719
NaeI GCCGGC 1 cut(s) 177
NdeII GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
NgoMIV GCCGGC 1 cut(s) 175
NlaIII CATG 4 cut(s) 286, 392, 430, 1177
NlaIV GGNNCC 2 cut(s) 648, 682
NmuCI GTSAC 2 cut(s) 160, 850
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 647
PceI AGGCCT 1 cut(s) 617
PciI ACATGT 1 cut(s) 426
PctI GAATGC 2 cut(s) 64, 642
PdiI GCCGGC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 148, 434, 1211
PflMI CCANNNNNTGG 1 cut(s) 804
PkrI GCNGC 2 cut(s) 498, 724
PleI GAGTC 5 cut(s) 139, 857, 902, 1042, 1117
PpsI GAGTC 5 cut(s) 139, 857, 902, 1042, 1117
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 437, 757, 862
PspGI CCWGG 3 cut(s) 437, 757, 862
PspN4I GGNNCC 2 cut(s) 648, 682
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 265, 588
RsaNI GTAC 2 cut(s) 264, 587
RseI CAYNNNNRTG 3 cut(s) 393, 699, 1233
SaqAI TTAA 2 cut(s) 141, 1128
SatI GCNGC 2 cut(s) 497, 723
Sau3AI GATC 6 cut(s) 66, 369, 538, 562, 741, 1027
SchI GAGTC 5 cut(s) 140, 858, 903, 1042, 1118
ScrFI CCNGG 3 cut(s) 439, 759, 864
SduI GDGCHC 1 cut(s) 999
SexAI ACCWGGT 1 cut(s) 862
SfaNI GCATC 4 cut(s) 114, 324, 522, 547
SfcI CTRYAG 2 cut(s) 654, 685
SmiMI CAYNNNNRTG 3 cut(s) 393, 699, 1233
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 5 cut(s) 238, 451, 1096, 1116, 1132
SseBI AGGCCT 1 cut(s) 617
SsiI CCGC 3 cut(s) 297, 496, 560
SspMI CTAG 1 cut(s) 825
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 3 cut(s) 437, 757, 862
TaaI ACNGT 2 cut(s) 160, 352
TaqI TCGA 2 cut(s) 744, 1233
TasI AATT 5 cut(s) 238, 451, 1096, 1116, 1132
TatI WGTACW 2 cut(s) 263, 586
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 3 cut(s) 148, 434, 1211
Tru1I TTAA 2 cut(s) 141, 1128
Tru9I TTAA 2 cut(s) 141, 1128
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 2 cut(s) 160, 850
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 2 cut(s) 160, 850
TspDTI ATGAA 6 cut(s) 42, 209, 271, 522, 942, 1203
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 2 cut(s) 451, 1132
XceI RCATGY 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 3 cut(s) 870, 1171, 1235
XmiI GTMKAC 1 cut(s) 897
XspI CTAG 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.