Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Reverse (-)

22776158 .. 22777853

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCCGATATGTTTGGAAAATGTAAATATGTTGATGGGGCAAGATGGGTTATCGATGCCATGGCAGTGAAAGATGTGGTGTCTTGGACCTCTTTGTGTTCTTGTTATGTTAACTGCGAGATGCCTAGACAAGGTTTGGAGGTATTTTGTGAGATGGGGTTGAATGGAGTGAGACCCATTGTAGTAACAGTTTCTTCAATCCTACCCGCTTGCTTGGCGTTGAAAGATTTGAATTTGGGAAGTCTGGTTCATGGGTTTGTGGTCAGACATGGAATGGAAGAGACAGTTAGCAGCGCCCTTGTAAATATCTATGCTAGTTGTCTGAGCGTTAAACAAGCTCAGTTGGTATTTGATATGATGTCTAAACAAGAAGTCGTATCCTGGAATGTACTTCTAGCTGCGTATTTTTCGAACAGAGATTGCGAAAAGGGTGTAACTTTATTTTATAGGATGAGAAGGGAAGTTGTTAAGTTGGATGGTGCTTCATGGAATACTGTTATTGGTGGGTGCTTGAATAATGGGCAGACGGAACAGACGCTGAAAATGCTCGGACAGATGAAAGAATCAGGAATTAAGCCCAACCAGATCACAATTACTAGTTTGTTACCAGCTTGCAAAGATTTGGAGAGCTTAAGGGCAGGCAAAGAGGTGCACAGTTACATCTTTAGGAATTGTTTAATGGAGGACTTGGCTACCACAACAGCTTTGGTTTTCATGTACGCGAAATGTGGTGAGTTGGAACTTTCTCAGAGGGTCTTTGATATGATGCCAAGAAGTGATACAGTTGCTTGGAATACGATCGATCATCGCAAACTCGATGCATGGGAATGGAGAAGAAGCCTTGTTGCTATTCAGAAAAATGTTAGATTCCGGGGGTATGTCCCCAACACTGATTTTGTTCTGCAAGATGTGGATCAAGAGGAGAAAGTGGGGATCCTTTGCAACCACAGTGAGAAACTTGCTGTTGCTTTTGGGATACTCAATTTGAATGGCGAATCGACAATACGGGTATTCAAGAATTTAAGGATATGTGGGGACTGCCATAATGCCATCAAGTTCAAGGCCAAGATTGTTGATTTGCAGATTATTGTTAGAGATTCCTTGAGGTTTCACCATTTCAAAAATGGGGATTGTTCTTGTAGAGATTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

385

Amino Acids

43.39

Weight (kDa)

8.07

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	148 - 205	3.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	161 - 205	1.5e-11	PPR repeat family
DYW_deaminase	PF14432	292 - 384	3.8e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	722
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	3 cut(s)	921, 928, 941
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	232, 1018
AfaI	GTAC	2 cut(s)	390, 719
AfiI	CCNNNNNNNGG	1 cut(s)	131
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	9 cut(s)	163, 198, 223, 232, 514, 988, 1015, 1060, 1120
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	380
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	5 cut(s)	338, 398, 611, 630, 704
AluI	AGCT	5 cut(s)	338, 398, 611, 630, 704
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	2 cut(s)	166, 275
Alw44I	GTGCAC	1 cut(s)	650
AlwI	GGATC	3 cut(s)	921, 928, 941
AlwNI	CAGNNNCTG	1 cut(s)	538
AoxI	GGCC	2 cut(s)	3, 1062
ApaLI	GTGCAC	1 cut(s)	650
ApeKI	GCWGC	2 cut(s)	291, 398
ApoI	RAATTY	2 cut(s)	232, 1018
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	2 cut(s)	743, 1103
AsuII	TTCGAA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	303, 385
BccI	CCATC	5 cut(s)	29, 39, 148, 470, 1058
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	2 cut(s)	388, 969
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	2 cut(s)	166, 275
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	126, 315, 395, 597
BfoI	RGCGCY	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	631
BfuI	GTATCC	2 cut(s)	388, 969
BisI	GCNGC	2 cut(s)	292, 399
BlsI	GCNGC	2 cut(s)	293, 400
Bme1390I	CCNGG	2 cut(s)	382, 872
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	935
BmrFI	CCNGG	2 cut(s)	382, 872
BmsI	GCATC	4 cut(s)	46, 111, 756, 808
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	1123
BpuMI	CCSGG	1 cut(s)	872
Bsa29I	ATCGAT	2 cut(s)	54, 801
BsaBI	GATNNNNATC	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	60, 871
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	912
BseBI	CCWGG	1 cut(s)	382
BseCI	ATCGAT	2 cut(s)	54, 801
BseDI	CCNNGG	2 cut(s)	60, 871
BseGI	GGATG	2 cut(s)	456, 481
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	314, 353, 761
BseRI	GAGGAG	1 cut(s)	935
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	2 cut(s)	303, 385
Bsh1236I	CGCG	1 cut(s)	722
Bsh1285I	CGRYCG	1 cut(s)	801
BshFI	GGCC	2 cut(s)	5, 1064
BshVI	ATCGAT	2 cut(s)	54, 801
BsiEI	CGRYCG	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	871
BslFI	GGGAC	2 cut(s)	866, 1049
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	166, 275
BsmFI	GGGAC	2 cut(s)	866, 1049
BsnI	GGCC	2 cut(s)	5, 1064
Bso31I	GGTCTC	1 cut(s)	166
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	5 cut(s)	585, 798, 802, 913, 933
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	5, 1064
BspCNI	CTCAG	3 cut(s)	315, 352, 760
BspDI	ATCGAT	2 cut(s)	54, 801
BspFNI	CGCG	1 cut(s)	722
BspLI	GGNNCC	1 cut(s)	935
BspPI	GGATC	3 cut(s)	921, 928, 941
BspT104I	TTCGAA	1 cut(s)	410
BspTI	CTTAAG	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	60, 871
BssMI	GATC	5 cut(s)	585, 798, 802, 913, 933
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	6 cut(s)	190, 286, 496, 656, 784, 950
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	631
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	211, 613, 640
BstDEI	CTNAG	3 cut(s)	323, 339, 747
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	456, 481
BstFNI	CGCG	1 cut(s)	722
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	5 cut(s)	588, 801, 805, 916, 936
BstMAI	GTCTC	2 cut(s)	166, 275
BstMBI	GATC	5 cut(s)	585, 798, 802, 913, 933
BstMCI	CGRYCG	1 cut(s)	801
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 544
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	380, 870
BstSLI	GKGCMC	1 cut(s)	654
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	2 cut(s)	303, 385
BstX2I	RGATCY	1 cut(s)	933
BstYI	RGATCY	1 cut(s)	933
Bsu15I	ATCGAT	2 cut(s)	54, 801
BsuI	GTATCC	2 cut(s)	388, 969
BsuRI	GGCC	2 cut(s)	5, 1064
BsuTUI	ATCGAT	2 cut(s)	54, 801
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	791
BtsCI	GGATG	2 cut(s)	456, 481
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	3 cut(s)	72, 888, 955
Cac8I	GCNNGC	3 cut(s)	211, 613, 640
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	87
ClaI	ATCGAT	2 cut(s)	54, 801
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	389, 718
CviAII	CATG	6 cut(s)	61, 251, 269, 486, 715, 822
CviQI	GTAC	2 cut(s)	389, 718
DdeI	CTNAG	3 cut(s)	323, 339, 747
DpnI	GATC	5 cut(s)	587, 800, 804, 915, 935
DpnII	GATC	5 cut(s)	585, 798, 802, 913, 933
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	64, 254, 272, 489, 718, 825
FaqI	GGGAC	2 cut(s)	866, 1049
FatI	CATG	6 cut(s)	60, 250, 268, 485, 714, 821
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	292, 399
FokI	GGATG	2 cut(s)	463, 488
Fsp4HI	GCNGC	2 cut(s)	292, 399
FspBI	CTAG	4 cut(s)	126, 315, 395, 597
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	292, 399
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	5, 1064
HapII	CCGG	1 cut(s)	871
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	6 cut(s)	64, 254, 272, 489, 718, 825
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	563, 867, 995, 1097
HpaI	GTTAAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	871
HphI	GGTGA	2 cut(s)	743, 1103
Hpy166II	GTNNAC	2 cut(s)	112, 652
Hpy188I	TCNGA	5 cut(s)	266, 324, 551, 750, 855
Hpy188III	TCNNGA	3 cut(s)	567, 917, 1015
Hpy8I	GTNNAC	2 cut(s)	112, 652
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	6 cut(s)	190, 286, 496, 656, 784, 950
HpyCH4V	TGCA	6 cut(s)	615, 652, 821, 904, 942, 1081
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 544
HpyF3I	CTNAG	3 cut(s)	323, 339, 747
Hsp92II	CATG	6 cut(s)	64, 254, 272, 489, 718, 825
HspAI	GCGC	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	585, 798, 802, 913, 933
LpnPI	CCDG	9 cut(s)	230, 367, 394, 552, 596, 621, 624, 884, 1135
Lsp1109I	GCAGC	2 cut(s)	303, 385
LweI	GCATC	4 cut(s)	46, 111, 756, 808
MaeI	CTAG	4 cut(s)	126, 315, 395, 597
MaeIII	GTNAC	4 cut(s)	184, 433, 603, 656
MalI	GATC	5 cut(s)	587, 800, 804, 915, 935
MboI	GATC	5 cut(s)	585, 798, 802, 913, 933
MboII	GAAGA	3 cut(s)	186, 290, 846
MflI	RGATCY	1 cut(s)	933
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	6 cut(s)	232, 570, 591, 670, 982, 1018
MmeI	TCCRAC	2 cut(s)	453, 717
MnlI	CCTC	7 cut(s)	100, 133, 640, 676, 744, 913, 1098
Mph1103I	ATGCAT	1 cut(s)	823
MseI	TTAA	7 cut(s)	111, 330, 468, 573, 632, 677, 1022
MslI	CAYNNNNRTG	2 cut(s)	65, 826
MspCI	CTTAAG	1 cut(s)	631
MspI	CCGG	1 cut(s)	871
MspR9I	CCNGG	2 cut(s)	382, 872
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	215, 544
NciI	CCSGG	1 cut(s)	872
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	585, 798, 802, 913, 933
NlaIII	CATG	6 cut(s)	64, 254, 272, 489, 718, 825
NlaIV	GGNNCC	1 cut(s)	935
NsiI	ATGCAT	1 cut(s)	823
NspV	TTCGAA	1 cut(s)	410
PfeI	GAWTC	4 cut(s)	563, 867, 995, 1097
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	293, 400
Ple19I	CGATCG	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	935
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	933
PvuI	CGATCG	1 cut(s)	801
RsaI	GTAC	2 cut(s)	390, 719
RsaNI	GTAC	2 cut(s)	389, 718
RseI	CAYNNNNRTG	2 cut(s)	65, 826
SaqAI	TTAA	7 cut(s)	111, 330, 468, 573, 632, 677, 1022
SatI	GCNGC	2 cut(s)	292, 399
Sau3AI	GATC	5 cut(s)	585, 798, 802, 913, 933
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	382, 872
SduI	GDGCHC	1 cut(s)	654
SfaNI	GCATC	4 cut(s)	46, 111, 756, 808
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	65, 826
SmlI	CTYRAG	2 cut(s)	631, 1102
SmoI	CTYRAG	2 cut(s)	631, 1102
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	6 cut(s)	232, 570, 591, 670, 982, 1018
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	4 cut(s)	126, 315, 395, 597
StyD4I	CCNGG	2 cut(s)	380, 870
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	6 cut(s)	190, 286, 496, 656, 784, 950
TaqI	TCGA	5 cut(s)	54, 410, 801, 816, 998
TasI	AATT	6 cut(s)	232, 570, 591, 670, 982, 1018
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	563, 867, 995, 1097
Tru1I	TTAA	7 cut(s)	111, 330, 468, 573, 632, 677, 1022
Tru9I	TTAA	7 cut(s)	111, 330, 468, 573, 632, 677, 1022
TscAI	CASTG	3 cut(s)	72, 895, 955
TseI	GCWGC	2 cut(s)	291, 398
TspDTI	ATGAA	4 cut(s)	239, 474, 572, 703
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	72, 895, 955
Vha464I	CTTAAG	1 cut(s)	631
VneI	GTGCAC	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	2 cut(s)	232, 1018
XcmI	CCANNNNNNNNNTGG	2 cut(s)	703, 1121
XspI	CTAG	4 cut(s)	126, 315, 395, 597
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.