pycom05g19900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0004226
Physical Location & Seq
Reverse (-)
22791511 .. 22792335
825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19900.1

Sequence Viewer

Length: 825 bp
ATGCTTTCAAAACTACCCACCAACGTCCCGCCTCACCTGAGCCTGAGCCTTAGGCTCTTGAAAATCTACTGTAATTCCGGCGATTTGCAATGTGCACGCCGCCTGTTCGATCAAATTCCCGAACCAGACCTGCGTGCGTGGACCATGCTCATATCAGGCTACACGCGATATGGGTTCCTCAAGGAATCCATAAATCTTTACGCTTCGCTCAGAGCTCGGCCAGTTGTGCCCGATAATCTTCTGCTTTTGTCAGTTGCTAAGGTTTGTGCTGCTCTTGGTGATATTAGAAATGCTAAAGAGCTTCACGATGATGCAATTGGATTTGGGTTTCATTTGGATGTCTCTTTGGGCAATGCAATGGTTGCTATGTTTGGAAAATGTAAATATGTTGATGGGGCGAGACTGGTTTTCGATGCCATGGCGGTGAAAGATGTGGTGTCTTGGACCTCTTTGTGTTCTTGTTATGTTAACTGTGGGATGCCTAGACAAGGTTTGGAGGTATTTCGCGAGATGGGGTTGAATAGAGTGAGACCCAATGTAGTAACAGTTTCTTCAATCCTACCTGCTTGCTCGGAGTTGAAAGATTTGAATTTGGGAAGAGTGATTCATGGGTTTGTGGTCAGACATGGAATGGAAGAGAATGTTTTCGTTAGCAGCGCCCTTGTAAATATCTATGCTAGTTGTCTGAGCATTACACAAGCTCAGTTGGTATATGATATGATGTCTAAACGAGATGTCGTGTCCTTGAATGCACCTCTAACTGCGTATTTTTCAAACAGAGATAGCAAAAAGGGTGTAACTTTTACTGGCTATATCTATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

275

Amino Acids

30.33

Weight (kDa)

8.82

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 143 - 191 2.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 138, 571
AccII CGCG 2 cut(s) 166, 507
AciI CCGC 3 cut(s) 29, 100, 422
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 114, 589
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 8 cut(s) 9, 61, 520, 555, 580, 589, 748, 774
AluBI AGCT 3 cut(s) 215, 301, 701
AluI AGCT 3 cut(s) 215, 301, 701
Alw21I GWGCWC 2 cut(s) 97, 217
Alw26I GTCTC 3 cut(s) 346, 394, 523
Alw44I GTGCAC 1 cut(s) 93
AoxI GGCC 1 cut(s) 218
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 269, 654
ApoI RAATTY 2 cut(s) 114, 589
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 2 cut(s) 141, 444
AsuHPI GGTGA 3 cut(s) 26, 290, 436
AvaII GGWCC 2 cut(s) 141, 444
AxyI CCTNAGG 1 cut(s) 50
BaeGI GKGCMC 2 cut(s) 97, 231
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 97, 217
BbvI GCAGC 2 cut(s) 256, 666
BccI CCATC 2 cut(s) 386, 505
BcoDI GTCTC 3 cut(s) 346, 394, 523
BfaI CTAG 2 cut(s) 483, 678
BfoI RGCGCY 1 cut(s) 660
BfuAI ACCTGC 2 cut(s) 138, 571
BisI GCNGC 3 cut(s) 100, 270, 655
BlsI GCNGC 3 cut(s) 101, 271, 656
Bme18I GGWCC 2 cut(s) 141, 444
BmgT120I GGNCC 2 cut(s) 141, 444
BmiI GGNNCC 1 cut(s) 176
BmsI GCATC 3 cut(s) 301, 403, 468
Bpu10I CCTNAGC 3 cut(s) 38, 44, 258
BpuEI CTTGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 3 cut(s) 221, 408, 811
Bse21I CCTNAGG 1 cut(s) 50
Bse3DI GCAATG 3 cut(s) 95, 358, 363
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 2 cut(s) 343, 483
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 3 cut(s) 95, 358, 363
BseMII CTCAG 5 cut(s) 29, 35, 223, 677, 716
BseNI ACTGG 3 cut(s) 221, 408, 811
BseSI GKGCMC 2 cut(s) 97, 231
BseXI GCAGC 2 cut(s) 256, 666
Bsh1236I CGCG 2 cut(s) 166, 507
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 97, 217
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 3 cut(s) 346, 394, 523
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 97, 217, 231
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 417
Bsp68I TCGCGA 1 cut(s) 507
BspACI CCGC 3 cut(s) 29, 100, 422
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 5 cut(s) 30, 36, 222, 678, 715
BspFNI CGCG 2 cut(s) 166, 507
BspLI GGNNCC 1 cut(s) 176
BspMI ACCTGC 2 cut(s) 138, 571
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 3 cut(s) 95, 358, 363
BsrI ACTGG 3 cut(s) 221, 408, 811
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 71, 473, 547
Bst6I CTCTTC 2 cut(s) 592, 630
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 97, 135, 568
BstDEI CTNAG 7 cut(s) 38, 44, 50, 209, 258, 686, 702
BstDSI CCRYGG 1 cut(s) 417
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 343, 483
BstFNI CGCG 2 cut(s) 166, 507
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 3 cut(s) 346, 394, 523
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 226, 362
BstSLI GKGCMC 2 cut(s) 97, 231
BstUI CGCG 2 cut(s) 166, 507
BstV1I GCAGC 2 cut(s) 256, 666
Bsu36I CCTNAGG 1 cut(s) 50
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 343, 483
BtuMI TCGCGA 1 cut(s) 507
BveI ACCTGC 2 cut(s) 138, 571
Cac8I GCNNGC 3 cut(s) 97, 135, 568
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 141, 444
CviAII CATG 4 cut(s) 145, 418, 608, 626
CviJI RGCY 9 cut(s) 42, 48, 55, 159, 215, 220, 301, 701, 810
CviKI_1 RGCY 9 cut(s) 42, 48, 55, 159, 215, 220, 301, 701, 810
DdeI CTNAG 7 cut(s) 38, 44, 50, 209, 258, 686, 702
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 592, 630
EarI CTCTTC 2 cut(s) 592, 630
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 141, 444
Eco53kI GAGCTC 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 4 cut(s) 148, 421, 611, 629
FaqI GGGAC 1 cut(s) 11
FatI CATG 4 cut(s) 144, 417, 607, 625
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 100, 270, 655
FokI GGATG 2 cut(s) 350, 490
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 3 cut(s) 100, 270, 655
FspBI CTAG 2 cut(s) 483, 678
GlaI GCGC 1 cut(s) 658
GluI GCNGC 3 cut(s) 100, 270, 655
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 659
Hin1II CATG 4 cut(s) 148, 421, 611, 629
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 2 cut(s) 185, 604
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 1 cut(s) 78
HphI GGTGA 3 cut(s) 26, 290, 436
Hpy166II GTNNAC 3 cut(s) 95, 141, 469
Hpy188I TCNGA 4 cut(s) 212, 574, 623, 687
Hpy188III TCNNGA 4 cut(s) 58, 119, 305, 506
Hpy8I GTNNAC 3 cut(s) 95, 141, 469
HpyCH4III ACNGT 3 cut(s) 71, 473, 547
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 88, 95, 314, 356, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 362
HpyF3I CTNAG 7 cut(s) 38, 44, 50, 209, 258, 686, 702
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 148, 421, 611, 629
HspAI GCGC 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 256, 666
LweI GCATC 3 cut(s) 301, 403, 468
MaeI CTAG 2 cut(s) 483, 678
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 541, 796
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 4 cut(s) 230, 543, 609, 647
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 3 cut(s) 97, 217, 231
MluCI AATT 4 cut(s) 73, 114, 315, 589
MnlI CCTC 5 cut(s) 42, 188, 457, 490, 765
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 3 cut(s) 309, 336, 422
MspI CCGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 754
MvnI CGCG 2 cut(s) 166, 507
MwoI GCNNNNNNNGC 2 cut(s) 226, 362
NcoI CCATGG 1 cut(s) 417
NdeII GATC 1 cut(s) 109
NlaIII CATG 4 cut(s) 148, 421, 611, 629
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 196
NruI TCGCGA 1 cut(s) 507
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 185, 604
PkrI GCNGC 3 cut(s) 101, 271, 656
Psp124BI GAGCTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 141, 444
RruI TCGCGA 1 cut(s) 507
RseI CAYNNNNRTG 3 cut(s) 309, 336, 422
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 3 cut(s) 100, 270, 655
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 141, 444
SduI GDGCHC 3 cut(s) 97, 217, 231
SfaNI GCATC 3 cut(s) 301, 403, 468
SinI GGWCC 2 cut(s) 141, 444
SmiMI CAYNNNNRTG 3 cut(s) 309, 336, 422
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 4 cut(s) 73, 114, 315, 589
SsiI CCGC 3 cut(s) 29, 100, 422
SspMI CTAG 2 cut(s) 483, 678
SstI GAGCTC 1 cut(s) 217
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 71, 473, 547
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 108, 411
TasI AATT 4 cut(s) 73, 114, 315, 589
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 2 cut(s) 185, 604
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseI GCWGC 2 cut(s) 269, 654
TspDTI ATGAA 2 cut(s) 320, 596
VneI GTGCAC 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 141, 444
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 2 cut(s) 114, 589
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 2 cut(s) 483, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.