Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Reverse (-)

20316667 .. 20317554

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCATGGAGATGGAGAAGAAGCCTTGTTGCTGTTCAGAAAAATGTTAGACTCCAAGGTGAAGCCCAATTCTGTTACTTTCACTGGTGTTTTGTGCGGTTGTAGCCATTCTCGGCTGGTTGATGAAGGCATCGTGGTTTTTGATTCAATGAGGATGGATCACTCAATAGAACCTGATGCAGATCATTACTCATGCATGGTTGATGTGCTTAGCCGTGCTGGCCGTCTAGTTGAGGCATATCAGTTCATACAAAGAATGCCAATGGAACCTGCTCCCGGTGCTTGGGGAGCATTGCTTGGTGCGTGTAGAGTGCACAAAAATGTGGACTTAGCAAAAATTGCAGCAAACAAGCTGTTCGAAATTGAACCAGATAACCCCGGCAACTATGTACTGTTGTCCAACATTTTAGTCACTGCCAATCGATGGGAAGAAGCTTCGGAAACCAGGAAGTTGATGAGAGACAGAGGAATCACAAAAACACCGGGTTGTTCTTGGGTTCAGGTTAGAAATAGAGTCTACTCTTTTGTTTCCGGTGATAGGAGTAACGAGCGTAGTGAGGAGATATACAAGTTTATGGTTGACATGGGTGAGAAGATGAGATTGGCAGGGTATGTTCCCAACACTGATTTTGTTCTGCAAGATGTGGATCAAGAGGAGAAAGTGTGGATCCTTTGCAACCACAGTGAGAAACTTGCTGTAGCTTTTGGGATACTCAATATGAATGGCGAATCGACGATTCGGGTATTTAAGAATTTGAGGATATGTGGGGACTGCCATAATGCCATCAAGTTCATGGCCAAGATTGTTGGTGTGCAGATTATTGTTAGAGATTCCTTGAGGTTTCACCATTTCAAAAATGGAGATTGTTCTTGTAGAGATTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

296

Amino Acids

33.49

Weight (kDa)

6.51

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 35	1.6e-06	PPR repeat family
E_motif	PF20431	105 - 167	1.2e-22	E motif
DYW_deaminase	PF14432	203 - 295	5.2e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	4 cut(s)	165, 654, 661, 674
AcoI	YGGCCR	2 cut(s)	220, 795
AcsI	RAATTY	1 cut(s)	751
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	4 cut(s)	275, 282, 423, 537
AgsI	TTSAA	3 cut(s)	147, 365, 853
AjnI	CCWGG	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	3 cut(s)	352, 434, 701
AluI	AGCT	3 cut(s)	352, 434, 701
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	453
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	4 cut(s)	165, 654, 661, 674
AoxI	GGCC	2 cut(s)	220, 795
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	751
AsuC2I	CCSGG	3 cut(s)	276, 378, 483
AsuHPI	GGTGA	4 cut(s)	70, 545, 599, 836
AsuII	TTCGAA	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	797
BamHI	GGATCC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	4 cut(s)	5, 148, 417, 791
BceAI	ACGGC	2 cut(s)	198, 207
BciT130I	CCWGG	1 cut(s)	445
BciVI	GTATCC	1 cut(s)	702
BcnI	CCSGG	3 cut(s)	276, 378, 483
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	702
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	342
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	4 cut(s)	276, 378, 445, 483
BmiI	GGNNCC	2 cut(s)	267, 668
BmrFI	CCNGG	4 cut(s)	276, 378, 445, 483
BmsI	GCATC	2 cut(s)	138, 166
Bpu1102I	GCTNAGC	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	856
BpuMI	CCSGG	3 cut(s)	276, 378, 483
Bsa29I	ATCGAT	1 cut(s)	421
BsaBI	GATNNNNATC	2 cut(s)	180, 645
BsaJI	CCNNGG	2 cut(s)	54, 376
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 282, 423, 537
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	2 cut(s)	180, 645
BseBI	CCWGG	1 cut(s)	445
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	54, 376
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	2 cut(s)	180, 645
BseLI	CCNNNNNNNGG	4 cut(s)	275, 282, 423, 537
BseMI	GCAATG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	572, 668
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	2 cut(s)	222, 797
BshVI	ATCGAT	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	4 cut(s)	276, 378, 482, 531
BslFI	GGGAC	1 cut(s)	782
BslI	CCNNNNNNNGG	4 cut(s)	275, 282, 423, 537
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	782
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	222, 797
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	157, 181, 646, 666
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	222, 797
BspDI	ATCGAT	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	267, 668
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	4 cut(s)	165, 654, 661, 674
BspT104I	TTCGAA	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	54, 376
BssMI	GATC	4 cut(s)	157, 181, 646, 666
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	2 cut(s)	393, 683
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	209, 328
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	4 cut(s)	160, 184, 649, 669
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	4 cut(s)	157, 181, 646, 666
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 219, 278, 287, 338
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	4 cut(s)	274, 376, 443, 481
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
Bsu15I	ATCGAT	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	702
BsuRI	GGCC	2 cut(s)	222, 797
BsuTUI	ATCGAT	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	4 cut(s)	81, 411, 621, 688
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	5 cut(s)	5, 192, 196, 583, 793
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	209, 328
DpnI	GATC	4 cut(s)	159, 183, 648, 668
DpnII	GATC	4 cut(s)	157, 181, 646, 666
EaeI	YGGCCR	2 cut(s)	220, 795
Eco130I	CCWWGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	2 cut(s)	6, 197
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	5 cut(s)	8, 195, 199, 586, 796
FaqI	GGGAC	1 cut(s)	782
FatI	CATG	5 cut(s)	4, 191, 195, 582, 792
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	222, 797
HapII	CCGG	4 cut(s)	276, 378, 482, 531
Hin1II	CATG	5 cut(s)	8, 195, 199, 586, 796
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	7 cut(s)	50, 143, 468, 513, 728, 736, 830
HpaII	CCGG	4 cut(s)	276, 378, 482, 531
HphI	GGTGA	4 cut(s)	70, 545, 599, 836
Hpy166II	GTNNAC	4 cut(s)	313, 325, 517, 580
Hpy188I	TCNGA	2 cut(s)	38, 439
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	4 cut(s)	313, 325, 517, 580
Hpy99I	CGWCG	1 cut(s)	736
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	393, 683
HpyCH4V	TGCA	8 cut(s)	4, 179, 195, 313, 341, 637, 675, 814
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 219, 278, 287, 338
HpyF3I	CTNAG	2 cut(s)	209, 328
Hsp92II	CATG	5 cut(s)	8, 195, 199, 586, 796
Kzo9I	GATC	4 cut(s)	157, 181, 646, 666
LmnI	GCTCC	2 cut(s)	277, 287
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	138, 166
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	73, 409, 542
MalI	GATC	4 cut(s)	159, 183, 648, 668
MboI	GATC	4 cut(s)	157, 181, 646, 666
MboII	GAAGA	3 cut(s)	29, 440, 604
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	4 cut(s)	67, 336, 360, 751
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	2 cut(s)	44, 522
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	7 cut(s)	144, 226, 458, 550, 646, 750, 831
Mox20I	TGGCCA	1 cut(s)	797
Mph1103I	ATGCAT	2 cut(s)	6, 197
MscI	TGGCCA	1 cut(s)	797
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	2 cut(s)	9, 318
Msp20I	TGGCCA	1 cut(s)	797
MspI	CCGG	4 cut(s)	276, 378, 482, 531
MspR9I	CCNGG	4 cut(s)	276, 378, 445, 483
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	5 cut(s)	102, 219, 278, 287, 338
NciI	CCSGG	3 cut(s)	276, 378, 483
NdeII	GATC	4 cut(s)	157, 181, 646, 666
NlaIII	CATG	5 cut(s)	8, 195, 199, 586, 796
NlaIV	GGNNCC	2 cut(s)	267, 668
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	2 cut(s)	6, 197
NspV	TTCGAA	1 cut(s)	357
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	5 cut(s)	143, 468, 728, 736, 830
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	2 cut(s)	44, 521
PpsI	GAGTC	2 cut(s)	44, 521
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	267, 668
PsuI	RGATCY	1 cut(s)	666
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	9, 318
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	4 cut(s)	157, 181, 646, 666
SchI	GAGTC	2 cut(s)	44, 522
ScrFI	CCNGG	4 cut(s)	276, 378, 445, 483
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	60, 175, 271, 354, 436, 504, 703, 842
SfaNI	GCATC	2 cut(s)	138, 166
SfcI	CTRYAG	1 cut(s)	696
SfuI	TTCGAA	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	9, 318
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
Sse9I	AATT	4 cut(s)	67, 336, 360, 751
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	4 cut(s)	274, 376, 443, 481
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	393, 683
TaqI	TCGA	3 cut(s)	357, 421, 731
TasI	AATT	4 cut(s)	67, 336, 360, 751
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	5 cut(s)	143, 468, 728, 736, 830
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	4 cut(s)	88, 418, 628, 688
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	138, 235, 734, 781
TspRI	CASTG	4 cut(s)	88, 418, 628, 688
Van91I	CCANNNNNTGG	1 cut(s)	423
VneI	GTGCAC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	2 cut(s)	790, 854
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	2 cut(s)	6, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.