Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Forward (+)

34568848 .. 34569180

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1214500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATTTCAAAGCTACCCACCAACGTCCCGCCTCACCTGAGCCTTAGGTTCTTGAAAATCTACTGTAATTCCGGCGATTTACAACGTGCACGCCGCCTGTTCAATCAAATTCCCGAACCAGACCTGCGTGCGGGGACCGTGCTCATATCAGGCTACACGCGACATGGGTTCCTCAAGGAATCCATAGATCTTCTGCTTCTGTCAGTTGCTAAGGCGTGTGCTGCTCGTGGTGATGTTAGAAATGCTAAAGAGCTTCACGATGATGCAATTCGATTCGGGTTTCATTCGGATGTCTCTTTGGGCAATGCAATGGTCGATACGTTTGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

111

Amino Acids

12.21

Weight (kDa)

9.39

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	29, 94, 131
AcsI	RAATTY	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	9, 55, 103
AluBI	AGCT	2 cut(s)	13, 253
AluI	AGCT	2 cut(s)	13, 253
Alw21I	GWGCWC	2 cut(s)	91, 144
Alw26I	GTCTC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	26, 242
AvaII	GGWCC	1 cut(s)	135
AxyI	CCTNAGG	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	91
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	91, 144
BbvI	GCAGC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	94, 222
BlsI	GCNGC	2 cut(s)	95, 223
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	136, 170
BmsI	GCATC	1 cut(s)	253
Bpu10I	CCTNAGC	2 cut(s)	38, 210
BpuEI	CTTGAG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse21I	CCTNAGG	1 cut(s)	44
Bse3DI	GCAATG	2 cut(s)	310, 315
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	310, 315
BseMII	CTCAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	91, 144
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	2 cut(s)	11, 148
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	11, 148
Bsp1286I	GDGCHC	2 cut(s)	91, 144
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	3 cut(s)	29, 94, 131
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	136, 170
BspMI	ACCTGC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	310, 315
BssMI	GATC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	65, 139
BstC8I	GCNNGC	2 cut(s)	91, 129
BstDEI	CTNAG	3 cut(s)	38, 44, 210
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSLI	GKGCMC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	91, 129
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	13, 42, 153, 253
CviKI_1	RGCY	4 cut(s)	13, 42, 153, 253
DdeI	CTNAG	3 cut(s)	38, 44, 210
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	146, 165, 185
FaqI	GGGAC	2 cut(s)	11, 148
FatI	CATG	1 cut(s)	163
FauI	CCCGC	2 cut(s)	36, 124
Fnu4HI	GCNGC	2 cut(s)	94, 222
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	94, 222
GluI	GCNGC	2 cut(s)	94, 222
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	2 cut(s)	179, 273
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	26, 242
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	52, 113, 257
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4III	ACNGT	2 cut(s)	65, 139
HpyCH4IV	ACGT	3 cut(s)	24, 85, 320
HpyCH4V	TGCA	3 cut(s)	89, 266, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	3 cut(s)	38, 44, 210
HpySE526I	ACGT	3 cut(s)	24, 85, 320
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	50, 85, 110, 132, 135, 137
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	3 cut(s)	24, 85, 320
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	91, 144
MluCI	AATT	3 cut(s)	67, 108, 267
MnlI	CCTC	2 cut(s)	42, 182
MslI	CAYNNNNRTG	2 cut(s)	261, 288
MspI	CCGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	136, 170
PfeI	GAWTC	2 cut(s)	179, 273
PkrI	GCNGC	2 cut(s)	95, 223
PspN4I	GGNNCC	2 cut(s)	136, 170
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	261, 288
SatI	GCNGC	2 cut(s)	94, 222
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	91, 144
SetI	ASST	8 cut(s)	15, 27, 39, 50, 88, 126, 255, 323
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	261, 288
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	67, 108, 267
SsiI	CCGC	3 cut(s)	29, 94, 131
TaaI	ACNGT	2 cut(s)	65, 139
TaiI	ACGT	3 cut(s)	27, 88, 323
TaqI	TCGA	2 cut(s)	271, 315
TasI	AATT	3 cut(s)	67, 108, 267
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	179, 273
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.