Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004226

Physical Location & Seq

Genomic Coordinates Reverse (-)

6725792 .. 6729139

Gene Structure 3348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAATCACTTGGTAGAAGGATTGATCCTTCCAATCTTTACACTCAAGAGACGTGGGTTGCTCAGGGAAGCTACACACCTCAACACTTCACTCAGAGCTCGGAACATTGCTCCTGACAATCTTCTGCTTCTCTCTGTTGCCAAGGCCTGTGCGGTTTTGGGTAGTCTCAGAAAAGCAACAGAGCTTCATGATGAGGCAATTCGGTTCGGGTTTCATTTGGACATTGCTTTGGGCAATGCAATGGTTGAAATGTTTGGGAAGTGTATGTTGATGGGGCGAGGGGGGGGTTTCGATGAAATGCCGGTGAAGGATGATTTGGCGGCGTTTAGAGAGATGGGTTTGATTGGAGTGAGACCCAATGCGGTGATAGTGTCGATGATCCTGCATGCTTGCTCTGAGTTGAGGGATTTGAATTCTGGATCAATTCATTATCAAGATGTTCATGATGAAATTGAGTTTGGTTTCGTACAAAGAGTTGCGTCGCTTGGTATCAACGACGGCCAACTCGGCGACAATTTGCTACAACCACAGCAAGTAATGAGCCTCTTAAGGTCCAACAACATCACAAAAACAAGAATTTACGACACCAATCCGCAGATACTAACTGCATTCGCAAATTCGGGTATTGAGCTCATTGTGACAGTGGAAAACGAAATGCCAAGCCAATTAACCAACCCCCAAGCAGCCCTTCAATGGGTTACTACACACATCAAGCCTTATTTTCCCTCCAAGAAAATTACAGGCATTATGATAGGGAACGAGCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

257

Amino Acids

28.27

Weight (kDa)

6.06

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	162 - 255	6.1e-15	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004226)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15940
malus_domestica	MD02G1167400.v1.1 MD05G1214500.v1.1 MD05G1214600.v1.1 MD05G1216500.v1.1 MD05G1217200.v1.1 MD10G1199000.v1.1
prunus_persica	Prupe.4G142900_v2.0.a1
pyrus_communis	pycom05g19880 pycom05g19900 pycom10g17150
rosa_chinensis	RchiOBHm_Chr2g0110371 RchiOBHm_Chr5g0026861
rosa_laevigata	RLG00000006394 RLG00000024474 RLG00000027454 RLG00000032965 RLG00000034129
rosa_multiflora	Rmu_co8025774.1_g000001 Rmu_sc0012328.1_g000003 Rmu_ssc0000172.1_g000017
rosa_roxburghii	Rroxscaffold_1G00052620 Rroxscaffold_1G00052640
rosa_rugosa	Rorug05G0430800
rosa_samantha	Rh1BG148800 Rh1DG180700 Rh2CG220800 Rh5AG488400 Rh5BG186400 Rh5CG205600 Rh7CG473500 Rh7DG442800
rosa_wichuraiana	Rw5G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	152, 320, 362, 593
AclWI	GGATC	3 cut(s)	19, 373, 427
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	3 cut(s)	412, 576, 616
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	693, 694
AflII	CTTAAG	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	248, 412, 692
AjiI	CACGTC	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	6 cut(s)	299, 331, 441, 473, 672, 704
AluBI	AGCT	5 cut(s)	71, 98, 184, 631, 763
AluI	AGCT	5 cut(s)	71, 98, 184, 631, 763
Alw21I	GWGCWC	2 cut(s)	100, 633
Alw26I	GTCTC	3 cut(s)	43, 170, 346
AlwI	GGATC	3 cut(s)	19, 373, 427
AoxI	GGCC	2 cut(s)	144, 499
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	3 cut(s)	412, 576, 616
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	316, 376
AvaII	GGWCC	1 cut(s)	552
BanII	GRGCYC	2 cut(s)	100, 633
Bbv12I	GWGCWC	2 cut(s)	100, 633
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	2 cut(s)	265, 328
BceAI	ACGGC	1 cut(s)	514
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BcoDI	GTCTC	3 cut(s)	43, 170, 346
BfaI	CTAG	1 cut(s)	764
BfrI	CTTAAG	1 cut(s)	547
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	321, 684
BlsI	GCNGC	2 cut(s)	322, 685
Bme18I	GGWCC	1 cut(s)	552
BmgBI	CACGTC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	693, 694
Bse118I	RCCGGY	1 cut(s)	301
Bse3DI	GCAATG	4 cut(s)	105, 222, 241, 246
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	693, 694
BseMI	GCAATG	4 cut(s)	105, 222, 241, 246
BseMII	CTCAG	4 cut(s)	76, 106, 181, 387
BseXI	GCAGC	1 cut(s)	695
BshFI	GGCC	2 cut(s)	146, 501
BsiHKAI	GWGCWC	2 cut(s)	100, 633
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	693, 694
BsmAI	GTCTC	3 cut(s)	43, 170, 346
BsmBI	CGTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	146, 501
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	100, 633
Bsp143I	GATC	3 cut(s)	24, 378, 419
BspACI	CCGC	4 cut(s)	152, 320, 362, 593
BspANI	GGCC	2 cut(s)	146, 501
BspCNI	CTCAG	4 cut(s)	75, 105, 180, 388
BspHI	TCATGA	2 cut(s)	187, 442
BspPI	GGATC	3 cut(s)	19, 373, 427
BspTI	CTTAAG	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	4 cut(s)	105, 222, 241, 246
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	3 cut(s)	24, 378, 419
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	643
BstAFI	CTTAAG	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	387, 391
BstDEI	CTNAG	4 cut(s)	62, 92, 167, 396
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	3 cut(s)	27, 381, 422
BstMAI	GTCTC	3 cut(s)	43, 170, 346
BstMBI	GATC	3 cut(s)	24, 378, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	695
BsuRI	GGCC	2 cut(s)	146, 501
BtrI	CACGTC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	387, 391
CciI	TCATGA	2 cut(s)	187, 442
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	188, 386, 443
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	4 cut(s)	62, 92, 167, 396
DpnI	GATC	3 cut(s)	26, 380, 421
DpnII	GATC	3 cut(s)	24, 378, 419
EaeI	YGGCCR	1 cut(s)	499
Ecl136II	GAGCTC	2 cut(s)	98, 631
Eco130I	CCWWGG	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	100, 633
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	552
Eco53kI	GAGCTC	2 cut(s)	98, 631
EcoICRI	GAGCTC	2 cut(s)	98, 631
EcoRI	GAATTC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	100, 633
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	3 cut(s)	191, 389, 446
FaiI	YATR	5 cut(s)	189, 266, 387, 444, 749
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FatI	CATG	3 cut(s)	187, 385, 442
Fnu4HI	GCNGC	2 cut(s)	321, 684
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	2 cut(s)	100, 633
Fsp4HI	GCNGC	2 cut(s)	321, 684
FspBI	CTAG	1 cut(s)	764
GluI	GCNGC	2 cut(s)	321, 684
HaeIII	GGCC	2 cut(s)	146, 501
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	191, 389, 446
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	316, 376
Hpy188I	TCNGA	4 cut(s)	95, 102, 170, 397
Hpy188III	TCNNGA	6 cut(s)	46, 113, 188, 417, 434, 443
Hpy99I	CGWCG	2 cut(s)	484, 500
HpyAV	CCTTC	4 cut(s)	11, 38, 301, 698
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	239, 385, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	4 cut(s)	62, 92, 167, 396
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	191, 389, 446
Kzo9I	GATC	3 cut(s)	24, 378, 419
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	49, 126, 160, 315, 395, 402, 726
Lsp1109I	GCAGC	1 cut(s)	695
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	637, 697
MalI	GATC	3 cut(s)	26, 380, 421
MboI	GATC	3 cut(s)	24, 378, 419
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	100, 633
MluCI	AATT	9 cut(s)	198, 412, 423, 450, 514, 576, 616, 665, 735
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	6 cut(s)	89, 187, 272, 396, 554, 736
MseI	TTAA	2 cut(s)	548, 668
MspCI	CTTAAG	1 cut(s)	547
MspI	CCGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	608
MwoI	GCNNNNNNNGC	1 cut(s)	507
NdeII	GATC	3 cut(s)	24, 378, 419
NlaIII	CATG	3 cut(s)	191, 389, 446
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PagI	TCATGA	2 cut(s)	187, 442
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	322, 685
Psp124BI	GAGCTC	2 cut(s)	100, 633
PspPI	GGNCC	1 cut(s)	552
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
SacI	GAGCTC	2 cut(s)	100, 633
SaqAI	TTAA	2 cut(s)	548, 668
SatI	GCNGC	2 cut(s)	321, 684
Sau3AI	GATC	3 cut(s)	24, 378, 419
Sau96I	GGNCC	1 cut(s)	552
SduI	GDGCHC	2 cut(s)	100, 633
SetI	ASST	8 cut(s)	55, 73, 81, 100, 186, 554, 633, 765
SinI	GGWCC	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	44, 547
SmoI	CTYRAG	2 cut(s)	44, 547
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	9 cut(s)	198, 412, 423, 450, 514, 576, 616, 665, 735
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	152, 320, 362, 593
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	2 cut(s)	100, 633
StuI	AGGCCT	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	291, 374
TasI	AATT	9 cut(s)	198, 412, 423, 450, 514, 576, 616, 665, 735
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	548, 668
Tru9I	TTAA	2 cut(s)	548, 668
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	7 cut(s)	17, 176, 203, 309, 416, 431, 462
TspRI	CASTG	1 cut(s)	648
Vha464I	CTTAAG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	552
XapI	RAATTY	3 cut(s)	412, 576, 616
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.