Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

13946385 .. 13948774

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGATATGGGACGCCATTTCCGGGACAACCGATTCCCTGAAACGGAACGCGCCGGATCTAACGGCCGTAAAAGGCTGGTGCCCCACAACCGATTCGCTCAAGCGCATCGCACTTGATGGAACTGCCGCCAAGAACGTGTGCTCCGCCGCTTACGGTTATGGCTCCTCCGCCGTGACCAAAGTCGACGGCGCCGTCAGGGGTAACTTGATCCCTTACGTCTGTAACGAGGTAGCCTGGTCCAAGATCGCCCAACTCGGCACGATCGTCGCTAAAAACGCAACCTATGAGGCCTTCAAACTCGTCCCAGGTGGAAGTGCATTTTATAATATTGGTGCCATGTCCATTTATGACTTTAACAATTCCAATAAACAAGAACTGGATGGGAAGGCATTGCAGGCTAAACTATTGAGACTGGAGAAAGAGTTAAGTGAATACAAGGAACTGAATAAGCCATGTGCAGATCTGAAGTCTCCCAGTGTCGCCAACGTTCATTCAAATGCGAGGCAGAAACCAGAAGATATGGAGTCTGAGTCTGCATATGGATCCAACATTCATTCAGTTGGAACTCGTAAGCCTGAAGATGTGATCAGAGTCTTTATAATGAAGGAATTCATTTTCAGGCAGTTTTGTGATGATATAATGGTTCCGGTTGCACCCAGGAAAAGGGACAATATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.86

Weight (kDa)

8.7

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	327, 602
AasI	GACNNNNNNGTC	1 cut(s)	194
AccB1I	GGYRCC	3 cut(s)	81, 191, 335
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	53
AciI	CCGC	4 cut(s)	129, 147, 150, 171
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	4 cut(s)	66, 205, 540, 553
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	2 cut(s)	488, 600
AcyI	GRCGYC	2 cut(s)	15, 192
AfiI	CCNNNNNNNGG	3 cut(s)	24, 45, 666
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	298, 498
AjnI	CCWGG	3 cut(s)	236, 307, 659
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	406, 477
AlwI	GGATC	4 cut(s)	66, 205, 540, 553
AoxI	GGCC	2 cut(s)	66, 291
ApoI	RAATTY	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	3 cut(s)	55, 108, 194
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	545
BanI	GGYRCC	3 cut(s)	81, 191, 335
Bbv12I	GWGCWC	1 cut(s)	146
BccI	CCATC	2 cut(s)	113, 377
BceAI	ACGGC	5 cut(s)	53, 81, 158, 179, 205
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	3 cut(s)	238, 309, 661
BclI	TGATCA	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	406, 477
BfoI	RGCGCY	1 cut(s)	195
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	2 cut(s)	129, 150
BlsI	GCNGC	2 cut(s)	130, 151
Bme1390I	CCNGG	4 cut(s)	25, 238, 309, 661
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	6 cut(s)	83, 166, 193, 337, 547, 648
BmrFI	CCNGG	4 cut(s)	25, 238, 309, 661
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	25
BsaHI	GRCGYC	2 cut(s)	15, 192
BsaJI	CCNNGG	2 cut(s)	307, 659
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 410, 440, 518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 45, 666
Bse1I	ACTGG	3 cut(s)	384, 420, 477
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	238, 309, 661
BseDI	CCNNGG	2 cut(s)	307, 659
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	24, 45, 666
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	384, 420, 477
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	2 cut(s)	69, 267
BshFI	GGCC	2 cut(s)	68, 293
BshNI	GGYRCC	3 cut(s)	81, 191, 335
BsiEI	CGRYCG	2 cut(s)	69, 267
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	24, 56, 650
BslFI	GGGAC	3 cut(s)	26, 40, 290
BslI	CCNNNNNNNGG	3 cut(s)	24, 45, 666
BsmAI	GTCTC	2 cut(s)	406, 477
BsmFI	GGGAC	3 cut(s)	26, 40, 290
BsnI	GGCC	2 cut(s)	68, 293
Bsp1286I	GDGCHC	2 cut(s)	86, 146
Bsp143I	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
BspACI	CCGC	4 cut(s)	129, 147, 150, 171
BspANI	GGCC	2 cut(s)	68, 293
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	6 cut(s)	83, 166, 193, 337, 547, 648
BspPI	GGATC	4 cut(s)	66, 205, 540, 553
BspT107I	GGYRCC	3 cut(s)	81, 191, 335
BsrDI	GCAATG	1 cut(s)	392
BsrI	ACTGG	3 cut(s)	384, 420, 477
BssECI	CCNNGG	2 cut(s)	307, 659
BssMI	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
BssNI	GRCGYC	2 cut(s)	15, 192
Bst2UI	CCWGG	3 cut(s)	238, 309, 661
Bst4CI	ACNGT	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	15, 192
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	3 cut(s)	55, 108, 194
BstKTI	GATC	7 cut(s)	61, 213, 249, 267, 466, 548, 591
BstMAI	GTCTC	2 cut(s)	406, 477
BstMBI	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
BstMCI	CGRYCG	2 cut(s)	69, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 398
BstNI	CCWGG	3 cut(s)	238, 309, 661
BstPAI	GACNNNNGTC	1 cut(s)	182
BstSCI	CCNGG	4 cut(s)	23, 236, 307, 659
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	58, 463, 545
BstYI	RGATCY	3 cut(s)	58, 463, 545
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	68, 293
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	3 cut(s)	55, 108, 194
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	1 cut(s)	23
CviAII	CATG	2 cut(s)	340, 456
CviJI	RGCY	8 cut(s)	68, 78, 165, 236, 293, 401, 454, 577
CviKI_1	RGCY	8 cut(s)	68, 78, 165, 236, 293, 401, 454, 577
DdeI	CTNAG	1 cut(s)	531
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	7 cut(s)	60, 212, 248, 266, 465, 547, 590
DpnII	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
EciI	GGCGGA	2 cut(s)	136, 160
EclXI	CGGCCG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	240
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	488, 600
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	3 cut(s)	236, 307, 659
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaeI	CATG	2 cut(s)	343, 459
FaqI	GGGAC	3 cut(s)	26, 40, 290
FatI	CATG	2 cut(s)	339, 455
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	129, 150
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	129, 150
GlaI	GCGC	3 cut(s)	54, 107, 193
GluI	GCNGC	2 cut(s)	129, 150
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	68, 293
HapII	CCGG	3 cut(s)	24, 56, 650
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	3 cut(s)	55, 108, 194
Hin1I	GRCGYC	2 cut(s)	15, 192
Hin1II	CATG	2 cut(s)	343, 459
Hin6I	GCGC	3 cut(s)	53, 106, 192
HinP1I	GCGC	3 cut(s)	53, 106, 192
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	5 cut(s)	35, 95, 527, 533, 594
HpaII	CCGG	3 cut(s)	24, 56, 650
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	468, 532, 593
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	2 cut(s)	191, 272
HpyAV	CCTTC	3 cut(s)	304, 382, 601
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	3 cut(s)	138, 219, 489
HpyCH4V	TGCA	5 cut(s)	320, 397, 461, 539, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 398
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	3 cut(s)	138, 219, 489
Hsp92I	GRCGYC	2 cut(s)	15, 192
Hsp92II	CATG	2 cut(s)	343, 459
HspAI	GCGC	3 cut(s)	53, 106, 192
KasI	GGCGCC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
LmnI	GCTCC	2 cut(s)	149, 170
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	3 cut(s)	138, 219, 489
MaeIII	GTNAC	3 cut(s)	175, 203, 224
MalI	GATC	7 cut(s)	60, 212, 248, 266, 465, 547, 590
MboI	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
MboII	GAAGA	2 cut(s)	530, 593
MflI	RGATCY	3 cut(s)	58, 463, 545
MhlI	GDGCHC	2 cut(s)	86, 146
MluCI	AATT	2 cut(s)	361, 611
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	3 cut(s)	536, 542, 603
MmeI	TCCRAC	2 cut(s)	544, 573
MnlI	CCTC	4 cut(s)	178, 223, 283, 498
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	2 cut(s)	357, 428
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	3 cut(s)	24, 56, 650
MspR9I	CCNGG	4 cut(s)	25, 238, 309, 661
MvaI	CCWGG	3 cut(s)	238, 309, 661
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	278, 398
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
NlaIII	CATG	2 cut(s)	343, 459
NlaIV	GGNNCC	6 cut(s)	83, 166, 193, 337, 547, 648
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 225, 264
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	35, 95
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	130, 151
Ple19I	CGATCG	1 cut(s)	267
PleI	GAGTC	3 cut(s)	535, 541, 602
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	3 cut(s)	535, 541, 602
PshAI	GACNNNNGTC	1 cut(s)	182
PsiI	TTATAA	2 cut(s)	327, 602
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	3 cut(s)	236, 307, 659
PspGI	CCWGG	3 cut(s)	236, 307, 659
PspN4I	GGNNCC	6 cut(s)	83, 166, 193, 337, 547, 648
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	3 cut(s)	58, 463, 545
PvuI	CGATCG	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	357, 428
SatI	GCNGC	2 cut(s)	129, 150
Sau3AI	GATC	7 cut(s)	58, 210, 246, 264, 463, 545, 588
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	3 cut(s)	536, 542, 603
ScrFI	CCNGG	4 cut(s)	25, 238, 309, 661
SduI	GDGCHC	2 cut(s)	86, 146
SetI	ASST	6 cut(s)	141, 222, 234, 287, 313, 492
SfaNI	GCATC	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	361, 611
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	4 cut(s)	129, 147, 150, 171
SspDI	GGCGCC	1 cut(s)	191
SspI	AATATT	1 cut(s)	331
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	4 cut(s)	23, 236, 307, 659
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	3 cut(s)	141, 222, 492
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	361, 611
TauI	GCSGC	2 cut(s)	131, 152
TfiI	GAWTC	2 cut(s)	35, 95
Tru1I	TTAA	2 cut(s)	357, 428
Tru9I	TTAA	2 cut(s)	357, 428
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	482, 545, 604, 620
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.