RchiOBHm_Chr5g0035311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005528
Physical Location & Seq
Reverse (-)
29201842 .. 29203294
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31421

Sequence Viewer

Length: 441 bp
ATGGGGATATGGGATCTCGTTTTTGGGGCATCCGATTCACTGAAACGGAAAGCGCCGGATCAAACGCCCGTTACCAAGGTCGCCAAGAACGTCTTCTCCACCGCTTACGGTTTTGGCTCCGCCGCCGTTACCAAGGTCGACGGCGCCGTCAGGGATAAAATGATCCCCTACTTTCGAAACGAGCAAGTGTGGTCCAAGATCTCCCTCTATGGCCCGATCCTCCTTAGAAACGGAGCCTCTGAGTTCTCTAAATTAATTCCAGGTGGAAATACATTTTATAACTTTGCTGCCGGATGCTTCTGTGACTATAACAATTCTAATAAACAAAAAGTGGATGTGAAAGAATTGCTGGCTAAAGTATCGAGATTAGAGAAAGAATTCGGTGAATTCCAGAAAAGGAAGACCAAGAAGGCTTGGTGGCAGGAAATTCTGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

9.67

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AasI GACNNNNNNGTC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 138
AciI CCGC 3 cut(s) 102, 120, 123
AclWI GGATC 4 cut(s) 21, 66, 157, 211
AcsI RAATTY 3 cut(s) 377, 386, 426
AcyI GRCGYC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AlwI GGATC 4 cut(s) 21, 66, 157, 211
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 3 cut(s) 377, 386, 426
AseI ATTAAT 1 cut(s) 254
Asp700I GAANNNNTTC 2 cut(s) 92, 377
AspLEI GCGC 2 cut(s) 55, 146
AspS9I GGNCC 2 cut(s) 192, 212
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 85, 407
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 3 cut(s) 110, 131, 157
BciT130I CCWGG 1 cut(s) 261
BfoI RGCGCY 2 cut(s) 56, 147
BglII AGATCT 1 cut(s) 198
BisI GCNGC 2 cut(s) 123, 288
BlsI GCNGC 2 cut(s) 124, 289
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 192, 212
BmiI GGNNCC 3 cut(s) 118, 145, 235
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 38, 284
BpiI GAAGAC 2 cut(s) 85, 407
Bpu14I TTCGAA 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 75, 132
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 75, 132
BseGI GGATG 3 cut(s) 29, 299, 340
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 56, 291
BsnI GGCC 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 175
Bsp143I GATC 5 cut(s) 13, 58, 162, 198, 216
BspACI CCGC 3 cut(s) 102, 120, 123
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 118, 145, 235
BspPI GGATC 4 cut(s) 21, 66, 157, 211
BspT104I TTCGAA 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 75, 132
BssMI GATC 5 cut(s) 13, 58, 162, 198, 216
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 2 cut(s) 75, 132
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 224, 240
BstF5I GGATG 3 cut(s) 29, 299, 340
BstH2I RGCGCY 2 cut(s) 56, 147
BstHHI GCGC 2 cut(s) 55, 146
BstKTI GATC 5 cut(s) 16, 61, 165, 201, 219
BstMBI GATC 5 cut(s) 13, 58, 162, 198, 216
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 2 cut(s) 85, 407
BstX2I RGATCY 2 cut(s) 13, 198
BstYI RGATCY 2 cut(s) 13, 198
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 3 cut(s) 29, 299, 340
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 2 cut(s) 55, 146
Cfr13I GGNCC 2 cut(s) 192, 212
CviJI RGCY 5 cut(s) 117, 213, 236, 353, 413
CviKI_1 RGCY 5 cut(s) 117, 213, 236, 353, 413
DdeI CTNAG 2 cut(s) 224, 240
DinI GGCGCC 1 cut(s) 145
DpnI GATC 5 cut(s) 15, 60, 164, 200, 218
DpnII GATC 5 cut(s) 13, 58, 162, 198, 216
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 75, 132
Eco47I GGWCC 1 cut(s) 192
EcoRI GAATTC 2 cut(s) 377, 386
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 75, 132
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 2 cut(s) 75, 132
FaiI YATR 4 cut(s) 10, 210, 279, 309
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 123, 288
FokI GGATG 3 cut(s) 16, 306, 347
Fsp4HI GCNGC 2 cut(s) 123, 288
GlaI GCGC 2 cut(s) 54, 145
GluI GCNGC 2 cut(s) 123, 288
HaeII RGCGCY 2 cut(s) 56, 147
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 56, 291
HhaI GCGC 2 cut(s) 55, 146
Hin1I GRCGYC 1 cut(s) 144
Hin6I GCGC 2 cut(s) 53, 144
HinP1I GCGC 2 cut(s) 53, 144
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 35
HpaII CCGG 2 cut(s) 56, 291
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 34, 241, 432
Hpy188III TCNNGA 2 cut(s) 363, 391
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 224, 240
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 144
HspAI GCGC 2 cut(s) 53, 144
KasI GGCGCC 1 cut(s) 143
Kzo9I GATC 5 cut(s) 13, 58, 162, 198, 216
LmnI GCTCC 2 cut(s) 122, 233
LpnPI CCDG 8 cut(s) 69, 136, 246, 273, 304, 335, 404, 407
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 2 cut(s) 38, 284
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 3 cut(s) 70, 127, 302
MalI GATC 5 cut(s) 15, 60, 164, 200, 218
MboI GATC 5 cut(s) 13, 58, 162, 198, 216
MboII GAAGA 2 cut(s) 85, 412
MflI RGATCY 2 cut(s) 13, 198
MluCI AATT 7 cut(s) 251, 255, 313, 344, 377, 386, 426
Mly113I GGCGCC 1 cut(s) 144
MnlI CCTC 3 cut(s) 215, 230, 247
MroXI GAANNNNTTC 2 cut(s) 92, 377
MseI TTAA 1 cut(s) 254
MspI CCGG 2 cut(s) 56, 291
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
NarI GGCGCC 1 cut(s) 144
NdeII GATC 5 cut(s) 13, 58, 162, 198, 216
NlaIV GGNNCC 3 cut(s) 118, 145, 235
NmuCI GTSAC 1 cut(s) 302
NspV TTCGAA 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 144
PdmI GAANNNNTTC 2 cut(s) 92, 377
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 124, 289
PluTI GGCGCC 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 254
PsiI TTATAA 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 118, 145, 235
PspPI GGNCC 2 cut(s) 192, 212
PsuI RGATCY 2 cut(s) 13, 198
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 123, 288
Sau3AI GATC 5 cut(s) 13, 58, 162, 198, 216
Sau96I GGNCC 2 cut(s) 192, 212
ScrFI CCNGG 1 cut(s) 261
SetI ASST 4 cut(s) 81, 93, 138, 265
SfaNI GCATC 2 cut(s) 38, 284
SfoI GGCGCC 1 cut(s) 145
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 1 cut(s) 192
Sse9I AATT 7 cut(s) 251, 255, 313, 344, 377, 386, 426
SsiI CCGC 3 cut(s) 102, 120, 123
SspDI GGCGCC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 75, 132
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 138, 175, 362
TasI AATT 7 cut(s) 251, 255, 313, 344, 377, 386, 426
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 302
TspGWI ACGGA 2 cut(s) 61, 246
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 192
VspI ATTAAT 1 cut(s) 254
XapI RAATTY 3 cut(s) 377, 386, 426
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 2 cut(s) 92, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.