Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

11254886 .. 11256301

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G189400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGGATATGGGATTTCATTTTCGGGACGACCGATTTACTAAAACGCAACGCTCCGGATCTAACGGCTGCGAAGAACTTGTTCTCCACAGTTTACGGTTATGGATCAGCCACCGTTACCCATATCGATAACGCCGTCGGGGGTAACTTGAAGCACTACCTTCAGGACGAGGAAGCCCGTTCCAGGATCCTCCAATTGGGCACGAACATCATTAAACACACAACCATCGAGGGCCTCAAAACCATCCCAGGTTACAAAATTTTTGCTAATTCAATCCGAGAGTTGAAGGAGTCCGATAAACAAGAAGTGGATGTGAAGGCATTGCAGGCTGATCTACGCAGATTGAAGAAAGATTTCAGTGAATACAGGAACGAGCATGAGCCAGAGGTGGATGTGAAGGCATTGCAGGCTGATGTAGTCAGATTGGAGAAAGAACTCAGTGAATACAGGAAACCCCGTGAGCAAGTCCAGACAGATAAGCCAAGTGCAGTTGGGAATCAGAAACCGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.43

Weight (kDa)

7.88

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	55
AclWI	GGATC	4 cut(s)	66, 112, 181, 194
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	183, 196
AgsI	TTSAA	4 cut(s)	151, 273, 286, 346
AjnI	CCWGG	2 cut(s)	182, 247
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AlwI	GGATC	4 cut(s)	66, 112, 181, 194
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	80, 353
AspS9I	GGNCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	233, 251
BceAI	ACGGC	2 cut(s)	81, 119
BciT130I	CCWGG	2 cut(s)	184, 249
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	184, 249
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	184, 249
Bsa29I	ATCGAT	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 196
Bse3DI	GCAATG	2 cut(s)	320, 401
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	184, 249
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	3 cut(s)	243, 316, 397
BseLI	CCNNNNNNNGG	2 cut(s)	183, 196
BseMI	GCAATG	2 cut(s)	320, 401
BseMII	CTCAG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	183, 196
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	58, 104, 186, 331
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	450
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	4 cut(s)	66, 112, 181, 194
BsrDI	GCAATG	2 cut(s)	320, 401
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	4 cut(s)	58, 104, 186, 331
Bst2UI	CCWGG	2 cut(s)	184, 249
Bst4CI	ACNGT	3 cut(s)	91, 98, 115
BstC8I	GCNNGC	2 cut(s)	327, 408
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	243, 316, 397
BstKTI	GATC	4 cut(s)	61, 107, 189, 334
BstMBI	GATC	4 cut(s)	58, 104, 186, 331
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 407
BstNI	CCWGG	2 cut(s)	184, 249
BstSCI	CCNGG	2 cut(s)	182, 247
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	58, 186
BstYI	RGATCY	2 cut(s)	58, 186
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	243, 316, 397
BtsIMutI	CAGTG	2 cut(s)	364, 445
Cac8I	GCNNGC	2 cut(s)	327, 408
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	126
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	8 cut(s)	68, 110, 176, 234, 329, 382, 410, 481
CviKI_1	RGCY	8 cut(s)	68, 110, 176, 234, 329, 382, 410, 481
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	60, 106, 188, 333
DpnII	GATC	4 cut(s)	58, 104, 186, 331
Eco57I	CTGAAG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	182, 247
FaeI	CATG	1 cut(s)	380
FaiI	YATR	4 cut(s)	10, 102, 123, 378
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	3 cut(s)	230, 323, 404
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	380
HinfI	GANTC	2 cut(s)	290, 496
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	278, 295, 422, 501
Hpy188III	TCNNGA	4 cut(s)	25, 56, 164, 469
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	4 cut(s)	170, 280, 310, 391
HpyCH4III	ACNGT	3 cut(s)	91, 98, 115
HpyCH4V	TGCA	3 cut(s)	325, 406, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 407
HpyF3I	CTNAG	1 cut(s)	437
Hsp92II	CATG	1 cut(s)	380
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	58, 104, 186, 331
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	55
MaeIII	GTNAC	3 cut(s)	115, 143, 251
MalI	GATC	4 cut(s)	60, 106, 188, 333
MboI	GATC	4 cut(s)	58, 104, 186, 331
MboII	GAAGA	2 cut(s)	85, 358
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	58, 186
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	3 cut(s)	194, 258, 268
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	5 cut(s)	163, 200, 223, 245, 379
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	2 cut(s)	80, 353
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	184, 249
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	184, 249
MwoI	GCNNNNNNNGC	2 cut(s)	326, 407
NdeII	GATC	4 cut(s)	58, 104, 186, 331
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 132
PdmI	GAANNNNTTC	2 cut(s)	80, 353
PfeI	GAWTC	1 cut(s)	496
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	182, 247
PspGI	CCWGG	2 cut(s)	182, 247
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	58, 186
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	58, 104, 186, 331
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	184, 249
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	3 cut(s)	162, 253, 390
Sse9I	AATT	3 cut(s)	194, 258, 268
StyD4I	CCNGG	2 cut(s)	182, 247
TaaI	ACNGT	3 cut(s)	91, 98, 115
TaqI	TCGA	2 cut(s)	126, 228
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	194, 258, 268
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	364, 445
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	364, 445
XapI	RAATTY	1 cut(s)	258
XmnI	GAANNNNTTC	2 cut(s)	80, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.