RchiOBHm_Chr5g0035261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005528
Physical Location & Seq
Reverse (-)
29163135 .. 29166585
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31417

Sequence Viewer

Length: 234 bp
ATGGGGATATGGGATACCATTTCTGGGACAACCGATTCACTGAAACGGAACGGGGCGGATCTAACGACGGCCCTGAAGAGCTGGTGCCCCACAGCCGAATCGCTCAAGCGCATCGTACCTGATGGAACAACTGTCAAGAACGCGTGCTCCACCGCTTACGGTTATGGCTCCGGCGTCAGGGATAATGTGATCCCCTACATTCCAAACGAGGAAGTGCGGTCCAAGATCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.36

Weight (kDa)

7.74

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AccII CGCG 1 cut(s) 143
AciI CCGC 3 cut(s) 56, 153, 217
AclWI GGATC 2 cut(s) 66, 184
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 24, 177
AflIII ACRYGT 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 149
AlwI GGATC 2 cut(s) 66, 184
AoxI GGCC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 70, 219
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 84
BciVI GTATCC 1 cut(s) 7
BfuI GTATCC 1 cut(s) 7
BglII AGATCT 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 70, 219
BmiI GGNNCC 2 cut(s) 86, 169
BmsI GCATC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 177
BseLI CCNNNNNNNGG 2 cut(s) 24, 177
BseSI GKGCMC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 24, 177
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 89, 149
Bsp143I GATC 3 cut(s) 58, 189, 225
BspACI CCGC 3 cut(s) 56, 153, 217
BspANI GGCC 1 cut(s) 71
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 86, 169
BspPI GGATC 2 cut(s) 66, 184
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 84
BssMI GATC 3 cut(s) 58, 189, 225
BssNI GRCGYC 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 133, 161
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 145
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 61, 192, 228
BstMBI GATC 3 cut(s) 58, 189, 225
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 58, 225
BstYI RGATCY 2 cut(s) 58, 225
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 70, 219
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 116
CviJI RGCY 4 cut(s) 71, 81, 95, 168
CviKI_1 RGCY 4 cut(s) 71, 81, 95, 168
CviQI GTAC 1 cut(s) 116
DpnI GATC 3 cut(s) 60, 191, 227
DpnII GATC 3 cut(s) 58, 189, 225
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 95
FaiI YATR 2 cut(s) 10, 165
FaqI GGGAC 1 cut(s) 40
GlaI GCGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 174
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 2 cut(s) 35, 98
HpaII CCGG 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 133, 161
Hsp92I GRCGYC 1 cut(s) 174
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 58, 189, 225
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 152, 173
LpnPI CCDG 6 cut(s) 9, 67, 86, 132, 163, 184
LweI GCATC 1 cut(s) 120
MalI GATC 3 cut(s) 60, 191, 227
MboI GATC 3 cut(s) 58, 189, 225
MboII GAAGA 1 cut(s) 88
MflI RGATCY 2 cut(s) 58, 225
MhlI GDGCHC 2 cut(s) 89, 149
MluI ACGCGT 1 cut(s) 141
MnlI CCTC 1 cut(s) 202
MspI CCGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 143
NdeII GATC 3 cut(s) 58, 189, 225
NlaIV GGNNCC 2 cut(s) 86, 169
PciSI GCTCTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 35, 98
PspN4I GGNNCC 2 cut(s) 86, 169
PspPI GGNCC 2 cut(s) 70, 219
PsuI RGATCY 2 cut(s) 58, 225
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 71
Sau3AI GATC 3 cut(s) 58, 189, 225
Sau96I GGNCC 2 cut(s) 70, 219
SduI GDGCHC 2 cut(s) 89, 149
SetI ASST 2 cut(s) 83, 121
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SsiI CCGC 3 cut(s) 56, 153, 217
TaaI ACNGT 2 cut(s) 133, 161
TfiI GAWTC 2 cut(s) 35, 98
TscAI CASTG 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.