Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Forward (+)

30417704 .. 30424340

Gene Structure 6637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1219600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGGATTTCCGATTACATCTCCGGGACAACCGATTCGCTGAAACGGAACGCTCCGGGTCTAACGGCCGTCAAAAACTTGTGCTCCACAGCTTACGGTTACGGGTCGGGTGCCGTTACCCAAATCGACAACGCCGTCAGGGGTAACTTGAACCAGTATTTGGGGGACGCGGAAGGCCGGGCCAAGATCGTCCGGTTCAGCTCCAGCATCGCTAAACACACAGCGTTGGAGAGCCTCAAAACCGTCCCAGGTTACAAAATTGTTAAGAGATCAATCAGTGACTTAAATGAGACCGATGAACAAGAAGTGAATGGGAAGGCAATGCAGGCTGATCTACGCAGATTGAAGAAAGAACTCAGTGAATACAGGAAAGTACATGAGCTAGAAGTGGATGTGAAGGCATTGCAGACCGATATACTCAGATTGGAGAAAGAACTCAGCGAATACAGGAAATCACACAAGCAAGTTCAGCTAGATAAGCCAAGTGCGGATTTGAAGTTACCAAACACAGCCAACATTCATTCAGTTGCAAATTGGAAACCAGAAGACGTGATCGGAGTCTTTATGATGAAGGAGGTCATGGGCAGGAAATTCTTGGATGATCTAATGGCTTTTCGCGGGGGACCTACAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.6

Weight (kDa)

9.25

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	2 cut(s)	170, 618
AciI	CCGC	3 cut(s)	170, 488, 618
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	590
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	151, 346, 496
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	92, 201, 382, 472
AluI	AGCT	4 cut(s)	92, 201, 382, 472
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	284
AoxI	GGCC	3 cut(s)	66, 175, 180
ApoI	RAATTY	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspS9I	GGNCC	2 cut(s)	180, 623
AsuC2I	CCSGG	3 cut(s)	25, 57, 179
AvaII	GGWCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	86
BceAI	ACGGC	4 cut(s)	53, 81, 98, 119
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	3 cut(s)	25, 57, 179
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	383, 473
Bme1390I	CCNGG	4 cut(s)	25, 57, 179, 249
Bme18I	GGWCC	1 cut(s)	623
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	2 cut(s)	180, 623
BmiI	GGNNCC	2 cut(s)	112, 624
BmrFI	CCNGG	4 cut(s)	25, 57, 179, 249
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	187
BpuMI	CCSGG	3 cut(s)	25, 57, 179
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	2 cut(s)	327, 401
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	397, 604
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	2 cut(s)	327, 401
BseMII	CTCAG	3 cut(s)	370, 433, 451
BseNI	ACTGG	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	170, 618
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	68, 177, 182
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	24, 56, 178, 193
BslFI	GGGAC	3 cut(s)	40, 179, 230
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	40, 179, 230
BsnI	GGCC	3 cut(s)	68, 177, 182
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	5 cut(s)	186, 269, 331, 552, 601
BspACI	CCGC	3 cut(s)	170, 488, 618
BspANI	GGCC	3 cut(s)	68, 177, 182
BspCNI	CTCAG	3 cut(s)	369, 432, 450
BspFNI	CGCG	2 cut(s)	170, 618
BspLI	GGNNCC	2 cut(s)	112, 624
BspT107I	GGYRCC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	327, 401
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	186, 269, 331, 552, 601
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	98, 244
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	356, 419, 437
BstF5I	GGATG	2 cut(s)	397, 604
BstFNI	CGCG	2 cut(s)	170, 618
BstKTI	GATC	5 cut(s)	189, 272, 334, 555, 604
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	5 cut(s)	186, 269, 331, 552, 601
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 469, 478
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	4 cut(s)	23, 55, 177, 247
BstUI	CGCG	2 cut(s)	170, 618
BstV2I	GAAGAC	1 cut(s)	552
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	68, 177, 182
BtgZI	GCGATG	1 cut(s)	193
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	397, 604
BtsIMutI	CAGTG	2 cut(s)	283, 364
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	180, 623
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	377, 580
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	3 cut(s)	356, 419, 437
DpnI	GATC	5 cut(s)	188, 271, 333, 554, 603
DpnII	GATC	5 cut(s)	186, 269, 331, 552, 601
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	623
Eco52I	CGGCCG	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	380, 583
FaiI	YATR	4 cut(s)	378, 416, 566, 581
FaqI	GGGAC	3 cut(s)	40, 179, 230
FatI	CATG	2 cut(s)	376, 579
FauI	CCCGC	1 cut(s)	611
FokI	GGATG	2 cut(s)	404, 611
FspBI	CTAG	2 cut(s)	383, 473
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	68, 177, 182
HapII	CCGG	4 cut(s)	24, 56, 178, 193
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	380, 583
HinfI	GANTC	2 cut(s)	35, 558
HpaII	CCGG	4 cut(s)	24, 56, 178, 193
Hpy188I	TCNGA	3 cut(s)	13, 422, 557
HpyAV	CCTTC	4 cut(s)	167, 310, 391, 565
HpyCH4III	ACNGT	2 cut(s)	98, 244
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	3 cut(s)	325, 406, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 469, 478
HpyF3I	CTNAG	3 cut(s)	356, 419, 437
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	380, 583
Kzo9I	GATC	5 cut(s)	186, 269, 331, 552, 601
LmnI	GCTCC	3 cut(s)	58, 89, 206
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	383, 473
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	6 cut(s)	98, 115, 143, 251, 278, 498
MalI	GATC	5 cut(s)	188, 271, 333, 554, 603
MboI	GATC	5 cut(s)	186, 269, 331, 552, 601
MboII	GAAGA	2 cut(s)	358, 557
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	3 cut(s)	258, 532, 590
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	245, 568
MseI	TTAA	2 cut(s)	264, 284
MspI	CCGG	4 cut(s)	24, 56, 178, 193
MspR9I	CCNGG	4 cut(s)	25, 57, 179, 249
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	170, 618
MwoI	GCNNNNNNNGC	3 cut(s)	326, 469, 478
NciI	CCSGG	3 cut(s)	25, 57, 179
NdeII	GATC	5 cut(s)	186, 269, 331, 552, 601
NlaIII	CATG	2 cut(s)	380, 583
NlaIV	GGNNCC	2 cut(s)	112, 624
NmuCI	GTSAC	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	23
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	112, 624
PspPI	GGNCC	2 cut(s)	180, 623
PspPPI	RGGWCCY	1 cut(s)	623
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	264, 284
Sau3AI	GATC	5 cut(s)	186, 269, 331, 552, 601
Sau96I	GGNCC	2 cut(s)	180, 623
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	4 cut(s)	25, 57, 179, 249
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	8 cut(s)	94, 203, 253, 384, 474, 552, 579, 628
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	623
Sse9I	AATT	3 cut(s)	258, 532, 590
SsiI	CCGC	3 cut(s)	170, 488, 618
SspMI	CTAG	2 cut(s)	383, 473
StyD4I	CCNGG	4 cut(s)	23, 55, 177, 247
TaaI	ACNGT	2 cut(s)	98, 244
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	126
TaqII	GACCGA	2 cut(s)	308, 425
TasI	AATT	3 cut(s)	258, 532, 590
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	264, 284
Tru9I	TTAA	2 cut(s)	264, 284
TscAI	CASTG	2 cut(s)	283, 364
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	312, 509, 584
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	283, 364
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	590
XspI	CTAG	2 cut(s)	383, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.