Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

30571264 .. 30575797

Gene Structure 4534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGGATATGCGATACCATTTCTGGGACAACCGATTCACTAGAACGGAACGTGCCAGATCAACAGTCCATGAAGAGCTGGTGCCCCACAACCGATTCGCTCAAGCGAATCGCACCTTATGTAACAGCTGCCAAGAACGTCTGCTCCACCGCTTACTGTCATGGCTCCGCCGCTGTTACCAAAGTCGATGGCGCCGTCAGGGATAACTTGATCCCCTACTTCCGAAACGAGGAAGCATGGTCTAAGATAGCCCAAATCGGCACCATCGTCGCTAAAAACGCAACCTATGAGGGCCTCAAACTCGTTCCAGGTGGAAGTACATTTTATAACATTGCTGCCAGTTCCATCCGTGATTTTAACAAATCCAATAAGCAAGAAGTGGATGTGAAAGCATTGCAGGCTGAACTTTTGAGTCTGAAGAAAGAATTGAGTGAATACTGGGAAATGAATAAGCCATGTGCAGATGTGAAGTCTCCCACGATAACCAGCGTTCAATCAGTTGTGACTTGTAAACCTGAAGATGTGATCAATGTCTTTATTATGAAGGAGTTCATGGGCAGGCAATTCTGTGGTGATCTATTGGTTCCGGTTGCGCCCAGGAAGAGGGCAGTGACAAGTACGAGAGCGGATAAGACAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.54

Weight (kDa)

8.1

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccB1I	GGYRCC	3 cut(s)	81, 191, 260
AccBSI	CCGCTC	1 cut(s)	626
AciI	CCGC	4 cut(s)	150, 168, 171, 626
AclWI	GGATC	1 cut(s)	205
AcuI	CTGAAG	2 cut(s)	437, 537
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	319, 619
AfiI	CCNNNNNNNGG	3 cut(s)	24, 229, 603
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	307, 596
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	2 cut(s)	78, 128
AluI	AGCT	2 cut(s)	78, 128
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	128, 335
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	194, 595
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	86
BanI	GGYRCC	3 cut(s)	81, 191, 260
BbvI	GCAGC	2 cut(s)	115, 322
BccI	CCATC	3 cut(s)	182, 272, 353
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	2 cut(s)	309, 598
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	3 cut(s)	129, 171, 336
BlsI	GCNGC	3 cut(s)	130, 172, 337
Bme1390I	CCNGG	2 cut(s)	309, 598
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	5 cut(s)	83, 166, 193, 262, 585
BmrFI	CCNGG	2 cut(s)	309, 598
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	596
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 229, 603
Bse1I	ACTGG	2 cut(s)	339, 443
Bse3DI	GCAATG	2 cut(s)	330, 392
BseBI	CCWGG	2 cut(s)	309, 598
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	345, 388
BseLI	CCNNNNNNNGG	3 cut(s)	24, 229, 603
BseMI	GCAATG	2 cut(s)	330, 392
BseNI	ACTGG	2 cut(s)	339, 443
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	115, 322
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	3 cut(s)	81, 191, 260
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 229, 603
BsmAI	GTCTC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	58, 210, 525, 574
BspACI	CCGC	4 cut(s)	150, 168, 171, 626
BspANI	GGCC	1 cut(s)	294
BspLI	GGNNCC	5 cut(s)	83, 166, 193, 262, 585
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	3 cut(s)	81, 191, 260
BsrBI	CCGCTC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	330, 392
BsrI	ACTGG	2 cut(s)	339, 443
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	4 cut(s)	58, 210, 525, 574
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	309, 598
Bst4CI	ACNGT	2 cut(s)	66, 158
Bst6I	CTCTTC	2 cut(s)	68, 596
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	399, 560
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	345, 388
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	194, 595
BstKTI	GATC	4 cut(s)	61, 213, 528, 577
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	4 cut(s)	58, 210, 525, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 398
BstNI	CCWGG	2 cut(s)	309, 598
BstSCI	CCNGG	2 cut(s)	307, 596
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	115, 322
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	345, 388
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	399, 560
CfoI	GCGC	2 cut(s)	194, 595
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	318, 618
CviAII	CATG	5 cut(s)	70, 161, 237, 456, 553
CviJI	RGCY	7 cut(s)	78, 128, 165, 251, 294, 401, 454
CviKI_1	RGCY	7 cut(s)	78, 128, 165, 251, 294, 401, 454
CviQI	GTAC	2 cut(s)	318, 618
DdeI	CTNAG	1 cut(s)	243
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	4 cut(s)	60, 212, 527, 576
DpnII	GATC	4 cut(s)	58, 210, 525, 574
Eam1104I	CTCTTC	2 cut(s)	68, 596
EarI	CTCTTC	2 cut(s)	68, 596
EciI	GGCGGA	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	437, 537
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	307, 596
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaeI	CATG	5 cut(s)	73, 164, 240, 459, 556
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	5 cut(s)	69, 160, 236, 455, 552
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	129, 171, 336
FokI	GGATG	2 cut(s)	332, 395
Fsp4HI	GCNGC	3 cut(s)	129, 171, 336
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	2 cut(s)	193, 594
GluI	GCNGC	3 cut(s)	129, 171, 336
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	2 cut(s)	194, 595
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	73, 164, 240, 459, 556
Hin6I	GCGC	2 cut(s)	192, 593
HinP1I	GCGC	2 cut(s)	192, 593
HinfI	GANTC	4 cut(s)	35, 95, 108, 412
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	2 cut(s)	224, 417
Hpy8I	GTNNAC	1 cut(s)	512
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	2 cut(s)	66, 158
HpyCH4IV	ACGT	2 cut(s)	51, 138
HpyCH4V	TGCA	2 cut(s)	397, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 398
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	51, 138
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	73, 164, 240, 459, 556
HspAI	GCGC	2 cut(s)	192, 593
KasI	GGCGCC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	58, 210, 525, 574
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	149, 170
Lsp1109I	GCAGC	2 cut(s)	115, 322
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	51, 138
MaeIII	GTNAC	4 cut(s)	121, 175, 502, 610
MalI	GATC	4 cut(s)	60, 212, 527, 576
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	4 cut(s)	58, 210, 525, 574
MboII	GAAGA	4 cut(s)	85, 430, 530, 613
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	2 cut(s)	425, 563
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	421
MnlI	CCTC	5 cut(s)	223, 283, 305, 597, 631
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	2 cut(s)	128, 173
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	309, 598
MvaI	CCWGG	2 cut(s)	309, 598
MwoI	GCNNNNNNNGC	2 cut(s)	278, 398
NarI	GGCGCC	1 cut(s)	192
NdeII	GATC	4 cut(s)	58, 210, 525, 574
NlaIII	CATG	5 cut(s)	73, 164, 240, 459, 556
NlaIV	GGNNCC	5 cut(s)	83, 166, 193, 262, 585
NmuCI	GTSAC	2 cut(s)	502, 610
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 264
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	3 cut(s)	35, 95, 108
PkrI	GCNGC	3 cut(s)	130, 172, 337
PleI	GAGTC	1 cut(s)	420
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	307, 596
PspGI	CCWGG	2 cut(s)	307, 596
PspN4I	GGNNCC	5 cut(s)	83, 166, 193, 262, 585
PspPI	GGNCC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	2 cut(s)	319, 619
RsaNI	GTAC	2 cut(s)	318, 618
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	129, 171, 336
Sau3AI	GATC	4 cut(s)	58, 210, 525, 574
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	309, 598
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	8 cut(s)	54, 80, 118, 130, 141, 287, 313, 517
SfoI	GGCGCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	425, 563
SsiI	CCGC	4 cut(s)	150, 168, 171, 626
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	307, 596
TaaI	ACNGT	2 cut(s)	66, 158
TaiI	ACGT	2 cut(s)	54, 141
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	425, 563
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	35, 95, 108
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	2 cut(s)	502, 610
TseI	GCWGC	2 cut(s)	128, 335
Tsp45I	GTSAC	2 cut(s)	502, 610
TspDTI	ATGAA	4 cut(s)	86, 461, 541, 557
TspGWI	ACGGA	2 cut(s)	61, 338
TspRI	CASTG	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.