Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29791153 .. 29792813

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG244100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGGATATGGGATACCATTTCTGGGACACTGAAACGGAACGCGCCGGCTCTAACGCCCCTGAAGAGCTGGGGGCTGAAACGGAACGCGCCGGATCTAACGCCCCTGAAGAGGTGGTTCCCCTCAACCGATTCGCTCAAGCGCAACGCGCCGGATCTAACGGCCCTGAAGAGCTGGTTCCCCTCAATCGATTCGCTCAAGCGCAACGCACCTGATGGAACAGCTGTCAAGAACGCGTGCTCCGCCGTCAGGGATAATGTGATCCCCTACTTTCGAAGCGAGGAAGCGCGGTCCAAGATCGCCCAAGTTGGCACGATCGTCGCTAAAAACGCAACCTATGAGGGCCTCAAATTCGTTCCAGGTGGAAATACATTGTATAACTTTGCTGCCAGCTGCGTCCATGACTATAACAATTCCAACAAACAGGAAGTCGATGTGAAAGAATTGCAGGCTAAAGTATTGAGACTAGAGAAAGAATTGGGTGAACTCGGGGAAAGGAATAAGGAGTCTCCCAGCATGACCAATAAGGCTTGGTCGCAGGCAATTAATTCTGAAGATGTGATCGATCAGTGTCTTTATGATGATGAAGGAGTTCTTGAGCAGGCAATGCCTGATCCGGTTGCACCCGGCCAGGAAGAAGGGCGGAGTGACAAGTACGAGAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.6

Weight (kDa)

6.0

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	44, 89, 149, 236, 289
AciI	CCGC	3 cut(s)	243, 289, 643
AclWI	GGATC	4 cut(s)	102, 162, 256, 608
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	4 cut(s)	83, 128, 188, 573
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	24, 111, 249
AflIII	ACRYGT	1 cut(s)	234
AjnI	CCWGG	2 cut(s)	358, 630
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	69, 174, 224, 393
AluI	AGCT	4 cut(s)	69, 174, 224, 393
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	2 cut(s)	457, 513
AlwI	GGATC	4 cut(s)	102, 162, 256, 608
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	162, 343, 628
ApeKI	GCWGC	2 cut(s)	386, 393
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	6 cut(s)	46, 91, 144, 151, 204, 289
AspS9I	GGNCC	3 cut(s)	163, 291, 343
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	494
AsuII	TTCGAA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	373, 380
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	2 cut(s)	177, 230
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	2 cut(s)	360, 632
BciVI	GTATCC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	2 cut(s)	457, 513
BfaI	CTAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	387, 394
BlsI	GCNGC	2 cut(s)	388, 395
Bme1390I	CCNGG	3 cut(s)	360, 627, 632
Bme18I	GGWCC	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	163, 291, 343
BmiI	GGNNCC	2 cut(s)	119, 179
BmrFI	CCNGG	3 cut(s)	360, 627, 632
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	3 cut(s)	122, 182, 617
BpuMI	CCSGG	1 cut(s)	627
Bsa29I	ATCGAT	2 cut(s)	189, 564
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 111, 249
Bse118I	RCCGGY	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	360, 632
BseCI	ATCGAT	2 cut(s)	189, 564
BseLI	CCNNNNNNNGG	3 cut(s)	24, 111, 249
BseMI	GCAATG	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	373, 380
BseYI	CCCAGC	2 cut(s)	69, 512
Bsh1236I	CGCG	5 cut(s)	44, 89, 149, 236, 289
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	164, 345, 630
BshVI	ATCGAT	2 cut(s)	189, 564
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	5 cut(s)	47, 92, 152, 617, 627
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 111, 249
BsmAI	GTCTC	2 cut(s)	457, 513
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	164, 345, 630
BsoBI	CYCGRG	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
BspACI	CCGC	3 cut(s)	243, 289, 643
BspANI	GGCC	3 cut(s)	164, 345, 630
BspDI	ATCGAT	2 cut(s)	189, 564
BspFNI	CGCG	5 cut(s)	44, 89, 149, 236, 289
BspLI	GGNNCC	2 cut(s)	119, 179
BspPI	GGATC	4 cut(s)	102, 162, 256, 608
BspQI	GCTCTTC	2 cut(s)	59, 164
BspT104I	TTCGAA	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssMI	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
Bst2UI	CCWGG	2 cut(s)	360, 632
Bst6I	CTCTTC	3 cut(s)	59, 104, 164
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	6 cut(s)	48, 238, 391, 450, 540, 603
BstFNI	CGCG	5 cut(s)	44, 89, 149, 236, 289
BstHHI	GCGC	6 cut(s)	46, 91, 144, 151, 204, 289
BstKTI	GATC	8 cut(s)	97, 157, 264, 300, 318, 564, 568, 616
BstMAI	GTCTC	2 cut(s)	457, 513
BstMBI	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 242, 329, 607
BstNI	CCWGG	2 cut(s)	360, 632
BstSCI	CCNGG	3 cut(s)	358, 625, 630
BstUI	CGCG	5 cut(s)	44, 89, 149, 236, 289
BstV1I	GCAGC	2 cut(s)	373, 380
BstX2I	RGATCY	2 cut(s)	94, 154
BstYI	RGATCY	2 cut(s)	94, 154
Bsu15I	ATCGAT	2 cut(s)	189, 564
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	164, 345, 630
BsuTUI	ATCGAT	2 cut(s)	189, 564
BtsIMutI	CAGTG	2 cut(s)	29, 575
Cac8I	GCNNGC	6 cut(s)	48, 238, 391, 450, 540, 603
CfoI	GCGC	6 cut(s)	46, 91, 144, 151, 204, 289
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	163, 291, 343
ClaI	ATCGAT	2 cut(s)	189, 564
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	2 cut(s)	401, 517
CviQI	GTAC	1 cut(s)	655
DpnI	GATC	8 cut(s)	96, 156, 263, 299, 317, 563, 567, 615
DpnII	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	3 cut(s)	59, 104, 164
EarI	CTCTTC	3 cut(s)	59, 104, 164
EciI	GGCGGA	2 cut(s)	232, 658
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	4 cut(s)	83, 128, 188, 573
Eco88I	CYCGRG	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	358, 630
FaeI	CATG	2 cut(s)	404, 520
FaiI	YATR	7 cut(s)	10, 339, 378, 402, 408, 518, 579
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	400, 516
Fnu4HI	GCNGC	2 cut(s)	387, 394
Fsp4HI	GCNGC	2 cut(s)	387, 394
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	6 cut(s)	45, 90, 143, 150, 203, 288
GluI	GCNGC	2 cut(s)	387, 394
GsaI	CCCAGC	2 cut(s)	73, 516
HaeIII	GGCC	3 cut(s)	164, 345, 630
HapII	CCGG	5 cut(s)	47, 92, 152, 617, 627
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	6 cut(s)	46, 91, 144, 151, 204, 289
Hin1II	CATG	2 cut(s)	404, 520
Hin6I	GCGC	6 cut(s)	44, 89, 142, 149, 202, 287
HinP1I	GCGC	6 cut(s)	44, 89, 142, 149, 202, 287
HinfI	GANTC	3 cut(s)	131, 191, 506
HpaII	CCGG	5 cut(s)	47, 92, 152, 617, 627
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	2 cut(s)	229, 596
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	581, 632
HpyCH4V	TGCA	2 cut(s)	448, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 242, 329, 607
Hsp92II	CATG	2 cut(s)	404, 520
HspAI	GCGC	6 cut(s)	44, 89, 142, 149, 202, 287
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Kzo9I	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
LguI	GCTCTTC	2 cut(s)	59, 164
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	2 cut(s)	373, 380
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	8 cut(s)	96, 156, 263, 299, 317, 563, 567, 615
MboI	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
MboII	GAAGA	5 cut(s)	76, 121, 181, 566, 647
MflI	RGATCY	2 cut(s)	94, 154
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	6 cut(s)	350, 412, 443, 476, 543, 547
MluI	ACGCGT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	6 cut(s)	105, 133, 193, 274, 334, 356
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	2 cut(s)	224, 393
MspI	CCGG	5 cut(s)	47, 92, 152, 617, 627
MspR9I	CCNGG	3 cut(s)	360, 627, 632
MvaI	CCWGG	2 cut(s)	360, 632
MvnI	CGCG	5 cut(s)	44, 89, 149, 236, 289
MwoI	GCNNNNNNNGC	4 cut(s)	148, 242, 329, 607
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	627
NdeII	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	404, 520
NlaIV	GGNNCC	2 cut(s)	119, 179
NmuCI	GTSAC	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	274
PciSI	GCTCTTC	2 cut(s)	59, 164
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	131, 191
PkrI	GCNGC	2 cut(s)	388, 395
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	358, 630
PspFI	CCCAGC	2 cut(s)	69, 512
PspGI	CCWGG	2 cut(s)	358, 630
PspN4I	GGNNCC	2 cut(s)	119, 179
PspPI	GGNCC	3 cut(s)	163, 291, 343
PsuI	RGATCY	2 cut(s)	94, 154
PvuI	CGATCG	1 cut(s)	318
PvuII	CAGCTG	2 cut(s)	224, 393
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SapI	GCTCTTC	2 cut(s)	59, 164
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	387, 394
Sau3AI	GATC	8 cut(s)	94, 154, 261, 297, 315, 561, 565, 613
Sau96I	GGNCC	3 cut(s)	163, 291, 343
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	360, 627, 632
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	8 cut(s)	71, 116, 176, 214, 226, 338, 364, 395
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	137, 197, 596
SmoI	CTYRAG	3 cut(s)	137, 197, 596
Sse9I	AATT	6 cut(s)	350, 412, 443, 476, 543, 547
SsiI	CCGC	3 cut(s)	243, 289, 643
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	358, 625, 630
TaqI	TCGA	4 cut(s)	189, 274, 432, 564
TasI	AATT	6 cut(s)	350, 412, 443, 476, 543, 547
TfiI	GAWTC	2 cut(s)	131, 191
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	36, 575
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	386, 393
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	1 cut(s)	600
TspGWI	ACGGA	2 cut(s)	52, 97
TspRI	CASTG	2 cut(s)	36, 575
VpaK11BI	GGWCC	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.