Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Forward (+)

18086829 .. 18087998

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGATTTCCGATTACATCTCCGGGACAACCGATTCGCTGAAACGGAACGCTCCGGGTCTAACGGCCGTCAAAAACGTGTGCTCCACAGCTTACGGTTACGGGTCGGGTGCCGTTACCCAAATCGACAACACCGTCAGGGGTAGCTTGAACCATTATTTGTGGGACGCGGAAGGCCGGGCCAAGATCGTCCGGTTCAGCTCCAGCATCGTTAAACACACAGCGTCGGAAAGCCTCAAAACCGTCCCAGGTTACAAAATTGTTAAGAGATCAATCAGTGACTTAAATGAGTCCGATAAACAAGAAGCGAATGTGAAGGCAACGCAGGCTGATCTGCACAGATTGATGAAAGAGTTGAGTGAATACAAGAAAGTACATGAGCTAGATGTGAAGGCATTGCAGGCCGATGTACTCAGATTGGATAAAGAACTCAGCAAATACAGGAAATCACACGAGCAAGTTCAGCTAGATAAGCCAAGTGCGGATTTGAAGTCACCAAACACAGCCAACATTCATTCAGTTGCAAATCAGAAACCAGAAGACGTGATCAGAGTCTTTATGATGAAGGAGTTCATGGGCAGGCAATTCTTGGATGATCTAATCACTTTCCGCGGGGCACCAACAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.46

Weight (kDa)

9.35

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	110, 616
AccII	CGCG	2 cut(s)	170, 612
AciI	CCGC	4 cut(s)	170, 482, 610, 612
AcoI	YGGCCR	1 cut(s)	66
AfaI	GTAC	2 cut(s)	375, 411
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	151, 490
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	5 cut(s)	92, 147, 201, 382, 466
AluI	AGCT	5 cut(s)	92, 147, 201, 382, 466
Alw21I	GWGCWC	1 cut(s)	86
AoxI	GGCC	4 cut(s)	66, 175, 180, 402
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
Asp700I	GAANNNNTTC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	3 cut(s)	25, 57, 179
AsuHPI	GGTGA	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	2 cut(s)	110, 616
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	86
BceAI	ACGGC	3 cut(s)	53, 81, 98
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	3 cut(s)	25, 57, 179
BfaI	CTAG	2 cut(s)	383, 467
Bme1390I	CCNGG	4 cut(s)	25, 57, 179, 249
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	112, 618
BmrFI	CCNGG	4 cut(s)	25, 57, 179, 249
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	187
BpuMI	CCSGG	3 cut(s)	25, 57, 179
BsaJI	CCNNGG	2 cut(s)	247, 610
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	247, 610
BseGI	GGATG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	427, 445
BseSI	GKGCMC	1 cut(s)	619
BseX3I	CGGCCG	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	170, 612
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	68, 177, 182, 404
BshNI	GGYRCC	2 cut(s)	110, 616
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	24, 56, 178, 193
BslFI	GGGAC	3 cut(s)	40, 179, 230
BsmFI	GGGAC	3 cut(s)	40, 179, 230
BsnI	GGCC	4 cut(s)	68, 177, 182, 404
Bsp1286I	GDGCHC	2 cut(s)	86, 619
Bsp143I	GATC	5 cut(s)	186, 269, 331, 546, 595
BspACI	CCGC	4 cut(s)	170, 482, 610, 612
BspANI	GGCC	4 cut(s)	68, 177, 182, 404
BspCNI	CTCAG	2 cut(s)	426, 444
BspFNI	CGCG	2 cut(s)	170, 612
BspLI	GGNNCC	2 cut(s)	112, 618
BspT107I	GGYRCC	2 cut(s)	110, 616
BsrDI	GCAATG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	247, 610
BssMI	GATC	5 cut(s)	186, 269, 331, 546, 595
BssSI	CACGAG	1 cut(s)	452
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	98, 136, 244
BstC8I	GCNNGC	3 cut(s)	327, 402, 581
BstDEI	CTNAG	2 cut(s)	413, 431
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	2 cut(s)	170, 612
BstKTI	GATC	5 cut(s)	189, 272, 334, 549, 598
BstMBI	GATC	5 cut(s)	186, 269, 331, 546, 595
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 401, 463, 472
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	4 cut(s)	23, 55, 177, 247
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	2 cut(s)	170, 612
BstV2I	GAAGAC	1 cut(s)	546
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	68, 177, 182, 404
BtgI	CCRYGG	1 cut(s)	610
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	327, 402, 581
Cfr13I	GGNCC	1 cut(s)	180
Cfr42I	CCGCGG	1 cut(s)	613
CseI	GACGC	2 cut(s)	176, 213
Csp6I	GTAC	2 cut(s)	374, 410
CviAII	CATG	2 cut(s)	377, 574
CviQI	GTAC	2 cut(s)	374, 410
DdeI	CTNAG	2 cut(s)	413, 431
DpnI	GATC	5 cut(s)	188, 271, 333, 548, 597
DpnII	GATC	5 cut(s)	186, 269, 331, 546, 595
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	380, 577
FaiI	YATR	3 cut(s)	378, 560, 575
FaqI	GGGAC	3 cut(s)	40, 179, 230
FatI	CATG	2 cut(s)	376, 573
FauI	CCCGC	1 cut(s)	605
FbaI	TGATCA	1 cut(s)	546
FokI	GGATG	1 cut(s)	605
FspBI	CTAG	2 cut(s)	383, 467
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	68, 177, 182, 404
HapII	CCGG	4 cut(s)	24, 56, 178, 193
HgaI	GACGC	2 cut(s)	176, 213
Hin1II	CATG	2 cut(s)	380, 577
HinfI	GANTC	3 cut(s)	35, 290, 552
HpaII	CCGG	4 cut(s)	24, 56, 178, 193
HphI	GGTGA	1 cut(s)	486
Hpy188I	TCNGA	6 cut(s)	13, 229, 295, 416, 531, 551
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	4 cut(s)	167, 310, 385, 559
HpyCH4III	ACNGT	3 cut(s)	98, 136, 244
HpyCH4IV	ACGT	2 cut(s)	78, 543
HpyCH4V	TGCA	3 cut(s)	337, 400, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 401, 463, 472
HpyF3I	CTNAG	2 cut(s)	413, 431
HpySE526I	ACGT	2 cut(s)	78, 543
Hsp92II	CATG	2 cut(s)	380, 577
Ksp22I	TGATCA	1 cut(s)	546
KspI	CCGCGG	1 cut(s)	613
Kzo9I	GATC	5 cut(s)	186, 269, 331, 546, 595
LmnI	GCTCC	3 cut(s)	58, 89, 206
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	383, 467
MaeII	ACGT	2 cut(s)	78, 543
MaeIII	GTNAC	5 cut(s)	98, 115, 251, 278, 492
MalI	GATC	5 cut(s)	188, 271, 333, 548, 597
MboI	GATC	5 cut(s)	186, 269, 331, 546, 595
MboII	GAAGA	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	86, 619
MluCI	AATT	2 cut(s)	258, 584
MlyI	GAGTC	2 cut(s)	299, 561
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	3 cut(s)	213, 264, 284
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	4 cut(s)	24, 56, 178, 193
MspR9I	CCNGG	4 cut(s)	25, 57, 179, 249
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	170, 612
MwoI	GCNNNNNNNGC	4 cut(s)	326, 401, 463, 472
NciI	CCSGG	3 cut(s)	25, 57, 179
NdeII	GATC	5 cut(s)	186, 269, 331, 546, 595
NlaIII	CATG	2 cut(s)	380, 577
NlaIV	GGNNCC	2 cut(s)	112, 618
NmuCI	GTSAC	2 cut(s)	278, 492
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	23
PleI	GAGTC	2 cut(s)	298, 560
PpsI	GAGTC	2 cut(s)	298, 560
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	112, 618
PspPI	GGNCC	1 cut(s)	180
RsaI	GTAC	2 cut(s)	375, 411
RsaNI	GTAC	2 cut(s)	374, 410
SacII	CCGCGG	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	213, 264, 284
Sau3AI	GATC	5 cut(s)	186, 269, 331, 546, 595
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	2 cut(s)	299, 561
ScrFI	CCNGG	4 cut(s)	25, 57, 179, 249
SduI	GDGCHC	2 cut(s)	86, 619
SetI	ASST	8 cut(s)	81, 94, 149, 203, 253, 384, 468, 546
SfaNI	GCATC	1 cut(s)	216
Sfr303I	CCGCGG	1 cut(s)	613
SgrBI	CCGCGG	1 cut(s)	613
Sse9I	AATT	2 cut(s)	258, 584
SsiI	CCGC	4 cut(s)	170, 482, 610, 612
SspMI	CTAG	2 cut(s)	383, 467
StyD4I	CCNGG	4 cut(s)	23, 55, 177, 247
TaaI	ACNGT	3 cut(s)	98, 136, 244
TaiI	ACGT	2 cut(s)	81, 546
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	258, 584
TatI	WGTACW	2 cut(s)	373, 409
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	213, 264, 284
Tru9I	TTAA	3 cut(s)	213, 264, 284
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	278, 492
Tsp45I	GTSAC	2 cut(s)	278, 492
TspDTI	ATGAA	4 cut(s)	362, 503, 562, 578
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	383, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.