Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29813593 .. 29815146

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG244200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGGATATGGGATATCGTTTTTGGGGCATCCGATTCACTGAAACGGAAAGTGCCGGATCAAACGCCCGTTACCAAGGTCGCCAAGAACGTCTTCTCCACCGCTTACGGTTTTGGCTCCGCCGCCGTTACCAAGGTCGACGGCGCCGTCAGGGATAAAATGATCCCCTACTTTCGAAACGAGCAAGTGTGGTCCAAGATCTCCCTCTATGGCCCGATCCTCCTTAGAAACGGAGCCTCTGAGTTCTCTAAATTAATTCCAGGTGGAAATACATTTTATAACTTTGCTGCCGGATGCTTCTGTGACTATAACAATTCTAATAAACAAAAAGTGGATGTGAAAGAATTGCTGGCTAAAGTATCGAGATTAGAGAAAGAATTCGGTGAATTCCAGAAAAGGAAGACCAAGAAGGCTTGGTGGCAGGAAATTCTGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.53

Weight (kDa)

9.67

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	3 cut(s)	102, 120, 123
AclWI	GGATC	3 cut(s)	66, 157, 211
AcsI	RAATTY	3 cut(s)	377, 386, 426
AcyI	GRCGYC	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AlwI	GGATC	3 cut(s)	66, 157, 211
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	3 cut(s)	377, 386, 426
AseI	ATTAAT	1 cut(s)	254
Asp700I	GAANNNNTTC	2 cut(s)	92, 377
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	192, 212
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	85, 407
BbvI	GCAGC	1 cut(s)	274
BceAI	ACGGC	3 cut(s)	110, 131, 157
BciT130I	CCWGG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	2 cut(s)	123, 288
BlsI	GCNGC	2 cut(s)	124, 289
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 212
BmiI	GGNNCC	3 cut(s)	118, 145, 235
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	38, 284
BpiI	GAAGAC	2 cut(s)	85, 407
Bpu14I	TTCGAA	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	75, 132
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	75, 132
BseGI	GGATG	3 cut(s)	29, 299, 340
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	56, 291
BsnI	GGCC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	58, 162, 198, 216
BspACI	CCGC	3 cut(s)	102, 120, 123
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	118, 145, 235
BspPI	GGATC	3 cut(s)	66, 157, 211
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	75, 132
BssMI	GATC	4 cut(s)	58, 162, 198, 216
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	75, 132
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	224, 240
BstF5I	GGATG	3 cut(s)	29, 299, 340
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	4 cut(s)	61, 165, 201, 219
BstMBI	GATC	4 cut(s)	58, 162, 198, 216
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	2 cut(s)	85, 407
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	29, 299, 340
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	192, 212
CviJI	RGCY	5 cut(s)	117, 213, 236, 353, 413
CviKI_1	RGCY	5 cut(s)	117, 213, 236, 353, 413
DdeI	CTNAG	2 cut(s)	224, 240
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	4 cut(s)	60, 164, 200, 218
DpnII	GATC	4 cut(s)	58, 162, 198, 216
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	75, 132
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	192
EcoRI	GAATTC	2 cut(s)	377, 386
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	75, 132
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	75, 132
FaiI	YATR	4 cut(s)	10, 210, 279, 309
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	123, 288
FokI	GGATG	3 cut(s)	16, 306, 347
Fsp4HI	GCNGC	2 cut(s)	123, 288
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	123, 288
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	56, 291
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	2 cut(s)	56, 291
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	34, 241, 432
Hpy188III	TCNNGA	2 cut(s)	363, 391
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	224, 240
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	58, 162, 198, 216
LmnI	GCTCC	2 cut(s)	122, 233
LpnPI	CCDG	8 cut(s)	69, 136, 246, 273, 304, 335, 404, 407
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	38, 284
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	70, 127, 302
MalI	GATC	4 cut(s)	60, 164, 200, 218
MboI	GATC	4 cut(s)	58, 162, 198, 216
MboII	GAAGA	2 cut(s)	85, 412
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	7 cut(s)	251, 255, 313, 344, 377, 386, 426
Mly113I	GGCGCC	1 cut(s)	144
MnlI	CCTC	3 cut(s)	215, 230, 247
MroXI	GAANNNNTTC	2 cut(s)	92, 377
MseI	TTAA	1 cut(s)	254
MspI	CCGG	2 cut(s)	56, 291
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	4 cut(s)	58, 162, 198, 216
NlaIV	GGNNCC	3 cut(s)	118, 145, 235
NmuCI	GTSAC	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 144
PdmI	GAANNNNTTC	2 cut(s)	92, 377
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	124, 289
PluTI	GGCGCC	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	118, 145, 235
PspPI	GGNCC	2 cut(s)	192, 212
PsuI	RGATCY	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	123, 288
Sau3AI	GATC	4 cut(s)	58, 162, 198, 216
Sau96I	GGNCC	2 cut(s)	192, 212
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	4 cut(s)	81, 93, 138, 265
SfaNI	GCATC	2 cut(s)	38, 284
SfoI	GGCGCC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	7 cut(s)	251, 255, 313, 344, 377, 386, 426
SsiI	CCGC	3 cut(s)	102, 120, 123
SspDI	GGCGCC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	75, 132
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	138, 175, 362
TasI	AATT	7 cut(s)	251, 255, 313, 344, 377, 386, 426
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	302
TspGWI	ACGGA	2 cut(s)	61, 246
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	3 cut(s)	377, 386, 426
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	2 cut(s)	92, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.