Rroxscaffold_1G00045120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005528
Physical Location & Seq
Forward (+)
64158265 .. 64163549
5285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045120.1

Sequence Viewer

Length: 645 bp
ATGGGGATATGGGATACCATTTCTGGGACAACCGATTCACTGAAACGGAACGCGCCGGATCTAACGCCCCTGAAGAGCTGGTGCCCCACAACCGATTCGCTGAAGCGAATCGCACCTGATGTAAGAGCTGCCAAGAACGTCTGCTCCAGCGCTTACGGTTATGGCTCCGCCGCCGTTACCAAAGTCGACGTCGCCGTCCGGGGTAACTTGATCCCTTACTTTCGAAACGAGGAAGCATGGTCCAAGATCGCCCAAATCGGCACCATCGTCGCTAAAAACGCAACCTATGAGGGCCTCAAACTCGTTCCAGGTGGAAGTACATTTTATAACATTGCTGCCGGTTCCATCCGTGATTGTAACAATTCCAATAAGCAAGAAGTGGATGTGAAAGCATTGCAGGCTGAACTTTTGAGTCTGAAGAAAGAATTGAGTGAATACCGGGAAATGAATAAGCCATGTGCAGATGTGAAGTCTCCCAGCATAACCAACGTTCAATCAGTTGCGACTTGTAAACCTGAAGATGTGATCAATGTCTTTATGATGAAGGAGTTCATGGGCAGGCAATTCTGTGGTGATCTATTGGTTCCGGTTGCGCCCAGGAAGAGGGCAGTGACAAGTACGAGAGCGGATAAGACAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.39

Weight (kDa)

8.84

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 192
AccB1I GGYRCC 2 cut(s) 81, 260
AccBSI CCGCTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 53
AciI CCGC 3 cut(s) 168, 171, 626
AclI AACGTT 1 cut(s) 489
AclWI GGATC 2 cut(s) 66, 205
AcuI CTGAAG 4 cut(s) 92, 122, 437, 537
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 319, 619
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 24, 603
AgsI TTSAA 1 cut(s) 494
AjnI CCWGG 2 cut(s) 307, 596
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 78, 128
AluI AGCT 2 cut(s) 78, 128
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 2 cut(s) 66, 205
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 128, 335
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
Asp700I GAANNNNTTC 1 cut(s) 548
AspLEI GCGC 3 cut(s) 55, 152, 595
AspS9I GGNCC 2 cut(s) 240, 292
AsuC2I CCSGG 2 cut(s) 200, 440
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 86
BanI GGYRCC 2 cut(s) 81, 260
BbvI GCAGC 2 cut(s) 115, 322
BccI CCATC 2 cut(s) 272, 353
BceAI ACGGC 2 cut(s) 158, 179
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 2 cut(s) 309, 598
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 1 cut(s) 525
BcnI CCSGG 2 cut(s) 200, 440
BcoDI GTCTC 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 3 cut(s) 129, 171, 336
BlsI GCNGC 3 cut(s) 130, 172, 337
Bme1390I CCNGG 4 cut(s) 200, 309, 440, 598
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 240, 292
BmiI GGNNCC 5 cut(s) 83, 166, 262, 343, 585
BmrFI CCNGG 4 cut(s) 200, 309, 440, 598
BpmI CTGGAG 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 223
BpuMI CCSGG 2 cut(s) 200, 440
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 199, 596
BsaWI WCCGGW 1 cut(s) 586
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 603
Bse118I RCCGGY 1 cut(s) 338
Bse3DI GCAATG 2 cut(s) 330, 392
BseBI CCWGG 2 cut(s) 309, 598
BseDI CCNNGG 2 cut(s) 199, 596
BseGI GGATG 2 cut(s) 345, 388
BseLI CCNNNNNNNGG 2 cut(s) 24, 603
BseMI GCAATG 2 cut(s) 330, 392
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 115, 322
BseYI CCCAGC 1 cut(s) 476
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 294
BshNI GGYRCC 2 cut(s) 81, 260
BsiSI CCGG 5 cut(s) 56, 199, 339, 439, 587
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 24, 603
BsmAI GTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 5 cut(s) 58, 210, 246, 525, 574
BspACI CCGC 3 cut(s) 168, 171, 626
BspANI GGCC 1 cut(s) 294
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 5 cut(s) 83, 166, 262, 343, 585
BspPI GGATC 2 cut(s) 66, 205
BspQI GCTCTTC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 223
BspT107I GGYRCC 2 cut(s) 81, 260
BsrBI CCGCTC 1 cut(s) 626
BsrDI GCAATG 2 cut(s) 330, 392
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 199, 596
BssMI GATC 5 cut(s) 58, 210, 246, 525, 574
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 309, 598
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 68, 596
BstACI GRCGYC 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 399, 560
BstF5I GGATG 2 cut(s) 345, 388
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 55, 152, 595
BstKTI GATC 5 cut(s) 61, 213, 249, 528, 577
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 5 cut(s) 58, 210, 246, 525, 574
BstMWI GCNNNNNNNGC 2 cut(s) 278, 398
BstNI CCWGG 2 cut(s) 309, 598
BstSCI CCNGG 4 cut(s) 198, 307, 438, 596
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 115, 322
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 2 cut(s) 345, 388
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 38, 615
Cac8I GCNNGC 2 cut(s) 399, 560
CfoI GCGC 3 cut(s) 55, 152, 595
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 240, 292
Csp6I GTAC 2 cut(s) 318, 618
CviAII CATG 3 cut(s) 237, 456, 553
CviJI RGCY 6 cut(s) 78, 128, 165, 294, 401, 454
CviKI_1 RGCY 6 cut(s) 78, 128, 165, 294, 401, 454
CviQI GTAC 2 cut(s) 318, 618
DpnI GATC 5 cut(s) 60, 212, 248, 527, 576
DpnII GATC 5 cut(s) 58, 210, 246, 525, 574
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 68, 596
EarI CTCTTC 2 cut(s) 68, 596
EciI GGCGGA 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 240
Eco47III AGCGCT 1 cut(s) 151
Eco57I CTGAAG 4 cut(s) 92, 122, 437, 537
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 307, 596
FaeI CATG 3 cut(s) 240, 459, 556
FaiI YATR 9 cut(s) 10, 162, 238, 288, 327, 457, 482, 539, 554
FaqI GGGAC 1 cut(s) 40
FatI CATG 3 cut(s) 236, 455, 552
FbaI TGATCA 1 cut(s) 525
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 129, 171, 336
FokI GGATG 2 cut(s) 332, 395
Fsp4HI GCNGC 3 cut(s) 129, 171, 336
GlaI GCGC 3 cut(s) 54, 151, 594
GluI GCNGC 3 cut(s) 129, 171, 336
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 294
HapII CCGG 5 cut(s) 56, 199, 339, 439, 587
HhaI GCGC 3 cut(s) 55, 152, 595
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 240, 459, 556
Hin6I GCGC 3 cut(s) 53, 150, 593
HinP1I GCGC 3 cut(s) 53, 150, 593
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 4 cut(s) 35, 95, 108, 412
HpaII CCGG 5 cut(s) 56, 199, 339, 439, 587
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 187, 512
Hpy188I TCNGA 1 cut(s) 417
Hpy8I GTNNAC 2 cut(s) 187, 512
Hpy99I CGWCG 3 cut(s) 191, 194, 272
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 3 cut(s) 138, 189, 489
HpyCH4V TGCA 2 cut(s) 397, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 398
HpySE526I ACGT 3 cut(s) 138, 189, 489
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 240, 459, 556
HspAI GCGC 3 cut(s) 53, 150, 593
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 5 cut(s) 58, 210, 246, 525, 574
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 2 cut(s) 149, 170
Lsp1109I GCAGC 2 cut(s) 115, 322
MaeII ACGT 3 cut(s) 138, 189, 489
MaeIII GTNAC 4 cut(s) 175, 203, 356, 610
MalI GATC 5 cut(s) 60, 212, 248, 527, 576
MbiI CCGCTC 1 cut(s) 626
MboI GATC 5 cut(s) 58, 210, 246, 525, 574
MboII GAAGA 4 cut(s) 85, 430, 530, 613
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 3 cut(s) 361, 425, 563
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 5 cut(s) 223, 283, 305, 597, 631
MroXI GAANNNNTTC 1 cut(s) 548
MspI CCGG 5 cut(s) 56, 199, 339, 439, 587
MspR9I CCNGG 4 cut(s) 200, 309, 440, 598
MvaI CCWGG 2 cut(s) 309, 598
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 278, 398
NciI CCSGG 2 cut(s) 200, 440
NdeII GATC 5 cut(s) 58, 210, 246, 525, 574
NlaIII CATG 3 cut(s) 240, 459, 556
NlaIV GGNNCC 5 cut(s) 83, 166, 262, 343, 585
NmuCI GTSAC 1 cut(s) 610
NspV TTCGAA 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 264
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 3 cut(s) 35, 95, 108
PkrI GCNGC 3 cut(s) 130, 172, 337
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PsiI TTATAA 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 307, 596
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 2 cut(s) 307, 596
PspN4I GGNNCC 5 cut(s) 83, 166, 262, 343, 585
PspPI GGNCC 2 cut(s) 240, 292
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 319, 619
RsaNI GTAC 2 cut(s) 318, 618
SalI GTCGAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 68
SatI GCNGC 3 cut(s) 129, 171, 336
Sau3AI GATC 5 cut(s) 58, 210, 246, 525, 574
Sau96I GGNCC 2 cut(s) 240, 292
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 4 cut(s) 200, 309, 440, 598
SduI GDGCHC 1 cut(s) 86
SetI ASST 9 cut(s) 80, 118, 130, 141, 192, 287, 313, 492, 517
SfuI TTCGAA 1 cut(s) 223
SinI GGWCC 1 cut(s) 240
Sse9I AATT 3 cut(s) 361, 425, 563
SsiI CCGC 3 cut(s) 168, 171, 626
StyD4I CCNGG 4 cut(s) 198, 307, 438, 596
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 3 cut(s) 141, 192, 492
TaqI TCGA 2 cut(s) 186, 223
TasI AATT 3 cut(s) 361, 425, 563
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 3 cut(s) 35, 95, 108
TscAI CASTG 2 cut(s) 45, 615
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 2 cut(s) 128, 335
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 461, 541, 557
TspGWI ACGGA 2 cut(s) 61, 338
TspRI CASTG 2 cut(s) 45, 615
VpaK11BI GGWCC 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 548
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.