Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

24062350 .. 24063062

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGGATTTGGGATTACATCTCCGGGACAACCGATTCGCTGAAACGGAAAAGCTTCGGACCTCGGTGGCCGACACCCGATTCGGTCAAACGCATCACACCCGATGTAACATCTGCCAAGAACTTGTGCTCCACCGCTTACGGGTACGGGGCGGGTGCCGTTACCCAAATAGACAAGGCCGTCCGGGGTAACTTGAATTATTATTTGGGGGACACGGAAGGCCGGGCAAAGATCGTCCGGTTCAGCTCCAGCATCGTTAAACACACAGCGCATGAGAGCCTCAAAACCGTCCCAGGTTACAAAATTCTTTCCAAATCACTTCGCGACGTTAAAGAGTCCGATAATCAAACTTCTCAAAAGGAATCTGATAAAGAAAAAATTGCATTTGAAGGCGGTACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.66

Weight (kDa)

9.43

Isoelectric Point (pI)

17.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	324
AciI	CCGC	3 cut(s)	135, 152, 393
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	303
AfaI	GTAC	2 cut(s)	146, 397
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	196, 389
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	54, 246
AluI	AGCT	2 cut(s)	54, 246
Alw21I	GWGCWC	1 cut(s)	131
AoxI	GGCC	3 cut(s)	68, 177, 220
ApoI	RAATTY	1 cut(s)	303
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 64, 96
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	3 cut(s)	25, 185, 224
AvaII	GGWCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	131
BceAI	ACGGC	2 cut(s)	143, 164
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	3 cut(s)	25, 185, 224
Bme1390I	CCNGG	4 cut(s)	25, 185, 224, 294
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	4 cut(s)	25, 185, 224, 294
BmsI	GCATC	2 cut(s)	102, 261
BpmI	CTGGAG	1 cut(s)	232
BpuMI	CCSGG	3 cut(s)	25, 185, 224
BsaJI	CCNNGG	3 cut(s)	62, 184, 292
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	62, 184, 292
BseLI	CCNNNNNNNGG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	70, 179, 222
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	4 cut(s)	24, 184, 223, 238
BslFI	GGGAC	3 cut(s)	40, 224, 275
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	3 cut(s)	40, 224, 275
BsnI	GGCC	3 cut(s)	70, 179, 222
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	231
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	3 cut(s)	135, 152, 393
BspANI	GGCC	3 cut(s)	70, 179, 222
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	62, 184, 292
BssMI	GATC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	4 cut(s)	23, 183, 222, 292
BstUI	CGCG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	70, 179, 222
BtuMI	TCGCGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	145, 396
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	6 cut(s)	54, 70, 179, 222, 246, 279
CviKI_1	RGCY	6 cut(s)	54, 70, 179, 222, 246, 279
CviQI	GTAC	2 cut(s)	145, 396
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	275
FaiI	YATR	1 cut(s)	273
FaqI	GGGAC	3 cut(s)	40, 224, 275
FatI	CATG	1 cut(s)	271
FauI	CCCGC	1 cut(s)	145
GlaI	GCGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	70, 179, 222
HapII	CCGG	4 cut(s)	24, 184, 223, 238
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	4 cut(s)	35, 80, 335, 362
HpaII	CCGG	4 cut(s)	24, 184, 223, 238
Hpy188I	TCNGA	3 cut(s)	59, 340, 367
Hpy188III	TCNNGA	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	212, 383
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	134, 251
LpnPI	CCDG	8 cut(s)	37, 197, 236, 251, 262, 279, 306, 384
LweI	GCATC	2 cut(s)	102, 261
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	4 cut(s)	106, 160, 188, 296
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	3 cut(s)	196, 303, 378
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	2 cut(s)	72, 290
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	258, 330
MspI	CCGG	4 cut(s)	24, 184, 223, 238
MspR9I	CCNGG	4 cut(s)	25, 185, 224, 294
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	324
NciI	CCSGG	3 cut(s)	25, 185, 224
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	157
NruI	TCGCGA	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	35, 80, 362
PfoI	TCCNGGA	1 cut(s)	23
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	59
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	2 cut(s)	146, 397
RsaNI	GTAC	2 cut(s)	145, 396
SaqAI	TTAA	2 cut(s)	258, 330
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	4 cut(s)	25, 185, 224, 294
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	56, 64, 248, 298, 330, 403
SfaNI	GCATC	2 cut(s)	102, 261
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	3 cut(s)	196, 303, 378
SsiI	CCGC	3 cut(s)	135, 152, 393
StyD4I	CCNGG	4 cut(s)	23, 183, 222, 292
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	330
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	196, 303, 378
TfiI	GAWTC	3 cut(s)	35, 80, 362
Tru1I	TTAA	2 cut(s)	258, 330
Tru9I	TTAA	2 cut(s)	258, 330
TspGWI	ACGGA	2 cut(s)	61, 230
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.