Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29862068 .. 29864584

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGGATATGGGATACCGTTTCTGGGACATCCGATTTACTGAAACGGAACGCGCCGGATCTAGCGGCCCTGAAGAGCTGGTGGCCCCCAACCGATTCGCTCAAGCGCAACGCACCTGATGGAACACCTGTCAAGAACGCGTGCTCCACCGCTTACGGTTTTGGCTCCTCCGCCGCTACCAAAGTCCACGGCGCCATCAGGGATAATGTGATCCCCTACTTTCGAAACGAGCAACTCTGGTCCAAGATCTCCCTATATGGCCTGATCCTCCTTAGAAACGCAATCTACGCAGTCTGTAAATTAATTCCAGTGGATGATACGAATAAGGAGATAGAGGAGGTTCAGAGGCAGAGGAAGGCCCCGATCTGGTGTGTCAACTCGACAACTTCCAGGGCATGGTCGATACCTTCACCAGCGCCATTAGGTCGATTATACGCAATGGAGCGAGGGCTGAAGATTCCTCAGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.44

Weight (kDa)

9.6

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccII	CGCG	2 cut(s)	53, 140
AciI	CCGC	4 cut(s)	65, 150, 171, 174
AclWI	GGATC	3 cut(s)	66, 205, 259
AcuI	CTGAAG	2 cut(s)	92, 473
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	24, 366, 396
AflIII	ACRYGT	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	389
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	66, 205, 259
AoxI	GGCC	4 cut(s)	66, 83, 259, 357
AseI	ATTAAT	1 cut(s)	302
AspLEI	GCGC	4 cut(s)	55, 108, 194, 418
AspS9I	GGNCC	4 cut(s)	67, 84, 240, 358
AsuHPI	GGTGA	1 cut(s)	402
AsuII	TTCGAA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	146
BccI	CCATC	2 cut(s)	113, 203
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	391
BciVI	GTATCC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	62
BfoI	RGCGCY	2 cut(s)	195, 419
BfuI	GTATCC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	2 cut(s)	66, 174
BlsI	GCNGC	2 cut(s)	67, 175
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	4 cut(s)	67, 84, 240, 358
BmiI	GGNNCC	4 cut(s)	86, 166, 193, 360
BmrFI	CCNGG	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	187, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 366, 396
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	187, 390
BseGI	GGATG	2 cut(s)	29, 319
BseLI	CCNNNNNNNGG	3 cut(s)	24, 366, 396
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	157, 350
Bsh1236I	CGCG	2 cut(s)	53, 140
BshFI	GGCC	4 cut(s)	68, 85, 261, 359
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 366, 396
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	4 cut(s)	68, 85, 261, 359
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	5 cut(s)	58, 210, 246, 264, 363
BspACI	CCGC	4 cut(s)	65, 150, 171, 174
BspANI	GGCC	4 cut(s)	68, 85, 261, 359
BspFNI	CGCG	2 cut(s)	53, 140
BspLI	GGNNCC	4 cut(s)	86, 166, 193, 360
BspPI	GGATC	3 cut(s)	66, 205, 259
BspQI	GCTCTTC	1 cut(s)	68
BspT104I	TTCGAA	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	187, 390
BssMI	GATC	5 cut(s)	58, 210, 246, 264, 363
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	19, 158
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	272, 462
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	29, 319
BstFNI	CGCG	2 cut(s)	53, 140
BstH2I	RGCGCY	2 cut(s)	195, 419
BstHHI	GCGC	4 cut(s)	55, 108, 194, 418
BstKTI	GATC	5 cut(s)	61, 213, 249, 267, 366
BstMBI	GATC	5 cut(s)	58, 210, 246, 264, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	53, 140
BstX2I	RGATCY	2 cut(s)	58, 246
BstYI	RGATCY	2 cut(s)	58, 246
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	4 cut(s)	68, 85, 261, 359
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	29, 319
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	4 cut(s)	55, 108, 194, 418
Cfr13I	GGNCC	4 cut(s)	67, 84, 240, 358
CviAII	CATG	1 cut(s)	396
CviJI	RGCY	7 cut(s)	68, 78, 85, 165, 261, 359, 451
CviKI_1	RGCY	7 cut(s)	68, 78, 85, 165, 261, 359, 451
DdeI	CTNAG	2 cut(s)	272, 462
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	5 cut(s)	60, 212, 248, 266, 365
DpnII	GATC	5 cut(s)	58, 210, 246, 264, 363
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	92, 473
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	389
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaeI	CATG	1 cut(s)	399
FaiI	YATR	5 cut(s)	10, 256, 258, 397, 433
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	66, 174
FokI	GGATG	2 cut(s)	16, 326
Fsp4HI	GCNGC	2 cut(s)	66, 174
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	4 cut(s)	54, 107, 193, 417
GluI	GCNGC	2 cut(s)	66, 174
HaeII	RGCGCY	2 cut(s)	195, 419
HaeIII	GGCC	4 cut(s)	68, 85, 261, 359
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	4 cut(s)	55, 108, 194, 418
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	4 cut(s)	53, 106, 192, 416
HinP1I	GCGC	4 cut(s)	53, 106, 192, 416
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	95, 457
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	2 cut(s)	187, 376
Hpy188I	TCNGA	3 cut(s)	34, 345, 465
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	187, 376
HpyAV	CCTTC	2 cut(s)	349, 417
HpyCH4III	ACNGT	2 cut(s)	19, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	272, 462
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	4 cut(s)	53, 106, 192, 416
KasI	GGCGCC	1 cut(s)	191
Kzo9I	GATC	5 cut(s)	58, 210, 246, 264, 363
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	149, 170, 442
MaeI	CTAG	1 cut(s)	62
MalI	GATC	5 cut(s)	60, 212, 248, 266, 365
MboI	GATC	5 cut(s)	58, 210, 246, 264, 363
MboII	GAAGA	2 cut(s)	85, 466
MflI	RGATCY	2 cut(s)	58, 246
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	299, 303
MluI	ACGCGT	1 cut(s)	138
Mly113I	GGCGCC	1 cut(s)	192
MnlI	CCTC	8 cut(s)	178, 278, 328, 331, 339, 345, 440, 471
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	2 cut(s)	53, 140
MwoI	GCNNNNNNNGC	1 cut(s)	287
NarI	GGCGCC	1 cut(s)	192
NdeII	GATC	5 cut(s)	58, 210, 246, 264, 363
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	4 cut(s)	86, 166, 193, 360
NspV	TTCGAA	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	95, 457
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	2 cut(s)	67, 175
PluTI	GGCGCC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	86, 166, 193, 360
PspPI	GGNCC	4 cut(s)	67, 84, 240, 358
PsuI	RGATCY	2 cut(s)	58, 246
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	66, 174
Sau3AI	GATC	5 cut(s)	58, 210, 246, 264, 363
Sau96I	GGNCC	4 cut(s)	67, 84, 240, 358
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	6 cut(s)	80, 118, 130, 342, 409, 427
SfoI	GGCGCC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	299, 303
SsiI	CCGC	4 cut(s)	65, 150, 171, 174
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	2 cut(s)	19, 158
TaqI	TCGA	4 cut(s)	223, 380, 401, 427
TasI	AATT	2 cut(s)	299, 303
TauI	GCSGC	2 cut(s)	68, 176
TfiI	GAWTC	2 cut(s)	95, 457
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	240
VspI	ATTAAT	1 cut(s)	302
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.