Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007948.1

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

7215 .. 10372

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007948.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggggatatgggatgccatttcttggacaaccgattcactgaaacggaacgcacctgatggaacagctgtgaagaacgcgtgctccaccgcttacggttatggctccgccgtcagggataatgtgaccccctactttccaaacgaggaagtgcggtccaagatctaccaaattgccccgatcctccttaaagagggcctcaaattcgttccaggtggaattgcagttcatggcattgcttccgggtgctaccgcgactatttcaattccaataaacaagaagtggatgtgaaagaattgcaggctaaagtattgagactagagaaagagttaggtgaattacgggaaaggaataagccatgtgcagatgtgaagtctcccagcataagcaacgttcagtcagttgcgactcgtaaacctgaagatgtgatcagagtcttcgtaatgaaggagttcatgtggaggcaactcactgatgatctaatggttccggttgcacccaggaagagggctgaacttttgaatctgaagaaagaattgagtgaataccgggaaatgaataagccatgtgcagatgtgaagtgtcccagcataaccagcgttcaatcagttgtgacttgtaaacctgaagatgtgatcattgtctttattatgaaggagttcatgggcaggcaattctgtggtgatctattggttccggttgcgcccaggaagagggcagtgacaagtacgggagcggataagacagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.15

Weight (kDa)

8.74

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	737
AccII	CGCG	2 cut(s)	80, 255
AciI	CCGC	5 cut(s)	90, 108, 154, 253, 737
AclI	AACGTT	1 cut(s)	393
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	3 cut(s)	441, 548, 648
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	5 cut(s)	24, 114, 193, 507, 714
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	265, 523, 605
AjnI	CCWGG	3 cut(s)	211, 500, 707
AloI	GAACNNNNNNTCC	4 cut(s)	68, 100, 210, 242
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	310, 381
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	2 cut(s)	452, 659
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	2 cut(s)	156, 196
AsuC2I	CCSGG	2 cut(s)	244, 551
AsuHPI	GGTGA	2 cut(s)	347, 695
AvaII	GGWCC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	3 cut(s)	213, 502, 709
BclI	TGATCA	2 cut(s)	429, 636
BcnI	CCSGG	2 cut(s)	244, 551
BcoDI	GTCTC	2 cut(s)	310, 381
BfaI	CTAG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	162
Bme1390I	CCNGG	5 cut(s)	213, 244, 502, 551, 709
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	156, 196
BmiI	GGNNCC	3 cut(s)	106, 489, 696
BmrFI	CCNGG	5 cut(s)	213, 244, 502, 551, 709
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	244, 551
BsaJI	CCNNGG	2 cut(s)	500, 707
BsaWI	WCCGGW	2 cut(s)	490, 697
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 443, 473
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 114, 193, 507, 714
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	213, 502, 709
BseDI	CCNNGG	2 cut(s)	500, 707
BseGI	GGATG	2 cut(s)	19, 292
BseLI	CCNNNNNNNGG	5 cut(s)	24, 114, 193, 507, 714
BseMI	GCAATG	1 cut(s)	234
BseYI	CCCAGC	2 cut(s)	380, 587
BsgI	GTGCAG	2 cut(s)	384, 591
Bsh1236I	CGCG	2 cut(s)	80, 255
BshFI	GGCC	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	243, 491, 550, 698
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	5 cut(s)	24, 114, 193, 507, 714
BsmAI	GTCTC	2 cut(s)	310, 381
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
BspACI	CCGC	5 cut(s)	90, 108, 154, 253, 737
BspANI	GGCC	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	80, 255
BspLI	GGNNCC	3 cut(s)	106, 489, 696
BspPI	GGATC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	500, 707
BssMI	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
Bst2UI	CCWGG	3 cut(s)	213, 502, 709
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	500, 707
BstC8I	GCNNGC	3 cut(s)	82, 303, 671
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	19, 292
BstFNI	CGCG	2 cut(s)	80, 255
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	6 cut(s)	165, 183, 432, 481, 639, 688
BstMAI	GTCTC	2 cut(s)	310, 381
BstMBI	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstNI	CCWGG	3 cut(s)	213, 502, 709
BstSCI	CCNGG	5 cut(s)	211, 242, 500, 549, 707
BstUI	CGCG	2 cut(s)	80, 255
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	19, 292
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	38, 471, 726
Cac8I	GCNNGC	3 cut(s)	82, 303, 671
CfoI	GCGC	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	156, 196
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	5 cut(s)	230, 360, 457, 567, 664
CviJI	RGCY	7 cut(s)	68, 105, 198, 305, 358, 512, 565
CviKI_1	RGCY	7 cut(s)	68, 105, 198, 305, 358, 512, 565
CviQI	GTAC	1 cut(s)	729
DpnI	GATC	6 cut(s)	164, 182, 431, 480, 638, 687
DpnII	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
Eam1104I	CTCTTC	2 cut(s)	500, 707
EarI	CTCTTC	2 cut(s)	500, 707
EciI	GGCGGA	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	3 cut(s)	441, 548, 648
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	3 cut(s)	211, 500, 707
FaeI	CATG	5 cut(s)	233, 363, 460, 570, 667
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	5 cut(s)	229, 359, 456, 566, 663
FbaI	TGATCA	2 cut(s)	429, 636
FokI	GGATG	2 cut(s)	26, 299
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	705
GsaI	CCCAGC	2 cut(s)	384, 591
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	4 cut(s)	243, 491, 550, 698
HhaI	GCGC	1 cut(s)	706
Hin1II	CATG	5 cut(s)	233, 363, 460, 570, 667
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HinfI	GANTC	4 cut(s)	35, 409, 435, 523
HpaII	CCGG	4 cut(s)	243, 491, 550, 698
HphI	GGTGA	2 cut(s)	347, 695
Hpy166II	GTNNAC	2 cut(s)	416, 623
Hpy188I	TCNGA	2 cut(s)	434, 528
Hpy8I	GTNNAC	2 cut(s)	416, 623
HpyAV	CCTTC	2 cut(s)	442, 649
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	5 cut(s)	224, 301, 365, 497, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	233, 363, 460, 570, 667
HspAI	GCGC	1 cut(s)	704
Ksp22I	TGATCA	2 cut(s)	429, 636
Kzo9I	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
LmnI	GCTCC	3 cut(s)	89, 110, 734
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	3 cut(s)	124, 613, 721
MalI	GATC	6 cut(s)	164, 182, 431, 480, 638, 687
MbiI	CCGCTC	1 cut(s)	737
MboI	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
MboII	GAAGA	7 cut(s)	85, 430, 434, 517, 541, 641, 724
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	8 cut(s)	171, 203, 219, 265, 296, 338, 536, 674
MluI	ACGCGT	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	403, 444
MnlI	CCTC	8 cut(s)	139, 187, 194, 209, 456, 501, 708, 742
MroXI	GAANNNNTTC	2 cut(s)	452, 659
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	4 cut(s)	243, 491, 550, 698
MspR9I	CCNGG	5 cut(s)	213, 244, 502, 551, 709
MvaI	CCWGG	3 cut(s)	213, 502, 709
MvnI	CGCG	2 cut(s)	80, 255
MwoI	GCNNNNNNNGC	1 cut(s)	597
NciI	CCSGG	2 cut(s)	244, 551
NdeII	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
NlaIII	CATG	5 cut(s)	233, 363, 460, 570, 667
NlaIV	GGNNCC	3 cut(s)	106, 489, 696
NmuCI	GTSAC	3 cut(s)	124, 613, 721
PdmI	GAANNNNTTC	2 cut(s)	452, 659
PfeI	GAWTC	2 cut(s)	35, 523
PflMI	CCANNNNNTGG	1 cut(s)	24
PleI	GAGTC	2 cut(s)	403, 443
PpsI	GAGTC	2 cut(s)	403, 443
Psp1406I	AACGTT	1 cut(s)	393
Psp6I	CCWGG	3 cut(s)	211, 500, 707
PspFI	CCCAGC	2 cut(s)	380, 587
PspGI	CCWGG	3 cut(s)	211, 500, 707
PspN4I	GGNNCC	3 cut(s)	106, 489, 696
PspPI	GGNCC	2 cut(s)	156, 196
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	6 cut(s)	162, 180, 429, 478, 636, 685
Sau96I	GGNCC	2 cut(s)	156, 196
SchI	GAGTC	2 cut(s)	403, 444
ScrFI	CCNGG	5 cut(s)	213, 244, 502, 551, 709
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	7 cut(s)	58, 70, 217, 337, 396, 421, 628
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	8 cut(s)	171, 203, 219, 265, 296, 338, 536, 674
SsiI	CCGC	5 cut(s)	90, 108, 154, 253, 737
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	5 cut(s)	211, 242, 500, 549, 707
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	396
TasI	AATT	8 cut(s)	171, 203, 219, 265, 296, 338, 536, 674
TfiI	GAWTC	2 cut(s)	35, 523
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	45, 478, 726
TseFI	GTSAC	3 cut(s)	124, 613, 721
Tsp45I	GTSAC	3 cut(s)	124, 613, 721
TspDTI	ATGAA	6 cut(s)	218, 445, 461, 572, 652, 668
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	45, 478, 726
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	156
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	203
XmnI	GAANNNNTTC	2 cut(s)	452, 659
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.