Rroxscaffold_1G00045100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005528
Physical Location & Seq
Forward (+)
64152785 .. 64153920
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045100.1

Sequence Viewer

Length: 495 bp
ATGGGGATATGGGATACCATTTCTGGGACAACCGATTCACTGAAACGGAACGCGCCGGATCTAACGCCCCTGAAGAGCTGGTGCCCCACGACCGATTCGCTCAAGCGCATCGCACCTGATGGAACAGCTGTCAAGAACGCGTGTTCCACCGCTTCCGGTTATGGCTCCGCCGTCAGGGATAATGTGATCCCCTACTTTCCAAACGAGGAAGTGCGGTCCAAGATCTACCAAATTGCCTCGATCCTCCTTAAAAACGCAACCTATGAGGGCCTCAAATTCGTTCCAGGTGGAATTACATTTCATGACTTTGCTGTCGGATGCTACCGTGACTATATCAATTCCAATAAACAAGAAGTGGATGTGAAAGAATCGCAGCCTAAAGAGAAAGATTTAGGTGAATCCCGGGAAAGGAATAAGCCATGTGCAGATGTGAAGTCCCCCAGCATAAGCAACGTTCAGTCAGTTGTGACTCGTAAACTGAGAGCAAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.11

Weight (kDa)

9.01

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 2 cut(s) 53, 140
AciI CCGC 3 cut(s) 150, 168, 214
AclI AACGTT 1 cut(s) 453
AclWI GGATC 3 cut(s) 66, 181, 235
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 24, 174, 408
AflIII ACRYGT 1 cut(s) 138
AjnI CCWGG 1 cut(s) 283
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 78, 128
AluI AGCT 2 cut(s) 78, 128
AlwI GGATC 3 cut(s) 66, 181, 235
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 2 cut(s) 55, 108
AspS9I GGNCC 2 cut(s) 216, 268
AsuC2I CCSGG 2 cut(s) 403, 404
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 7
BcnI CCSGG 2 cut(s) 403, 404
BfuI GTATCC 1 cut(s) 7
BglII AGATCT 1 cut(s) 222
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 3 cut(s) 285, 403, 404
Bme18I GGWCC 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 216, 268
BmiI GGNNCC 2 cut(s) 83, 166
BmrFI CCNGG 3 cut(s) 285, 403, 404
BmsI GCATC 2 cut(s) 117, 308
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 403, 404
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 174, 408
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 2 cut(s) 323, 364
BseLI CCNNNNNNNGG 3 cut(s) 24, 174, 408
BseMII CTCAG 1 cut(s) 470
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 2 cut(s) 53, 140
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 3 cut(s) 56, 156, 403
BslFI GGGAC 2 cut(s) 40, 421
BslI CCNNNNNNNGG 3 cut(s) 24, 174, 408
BsmFI GGGAC 2 cut(s) 40, 421
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 58, 186, 222, 240
BspACI CCGC 3 cut(s) 150, 168, 214
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 2 cut(s) 53, 140
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 83, 166
BspPI GGATC 3 cut(s) 66, 181, 235
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 4 cut(s) 58, 186, 222, 240
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 323, 364
BstFNI CGCG 2 cut(s) 53, 140
BstHHI GCGC 2 cut(s) 55, 108
BstKTI GATC 4 cut(s) 61, 189, 225, 243
BstMBI GATC 4 cut(s) 58, 186, 222, 240
BstMCI CGRYCG 1 cut(s) 93
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 283, 401, 402
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 2 cut(s) 53, 140
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 2 cut(s) 58, 222
BstYI RGATCY 2 cut(s) 58, 222
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 323, 364
BtsIMutI CAGTG 1 cut(s) 38
CciI TCATGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 55, 108
Cfr13I GGNCC 2 cut(s) 216, 268
Cfr9I CCCGGG 1 cut(s) 402
CviAII CATG 2 cut(s) 302, 420
CviJI RGCY 6 cut(s) 78, 128, 165, 270, 376, 418
CviKI_1 RGCY 6 cut(s) 78, 128, 165, 270, 376, 418
DdeI CTNAG 1 cut(s) 479
DpnI GATC 4 cut(s) 60, 188, 224, 242
DpnII GATC 4 cut(s) 58, 186, 222, 240
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 305, 423
FaiI YATR 7 cut(s) 10, 162, 264, 303, 333, 421, 446
FaqI GGGAC 2 cut(s) 40, 421
FatI CATG 2 cut(s) 301, 419
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 330, 371
Fsp4HI GCNGC 1 cut(s) 374
GlaI GCGC 2 cut(s) 54, 107
GluI GCNGC 1 cut(s) 374
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 270
HapII CCGG 3 cut(s) 56, 156, 403
HhaI GCGC 2 cut(s) 55, 108
Hin1II CATG 2 cut(s) 305, 423
Hin6I GCGC 2 cut(s) 53, 106
HinP1I GCGC 2 cut(s) 53, 106
HinfI GANTC 5 cut(s) 35, 95, 368, 398, 469
HpaII CCGG 3 cut(s) 56, 156, 403
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 133, 302
Hpy8I GTNNAC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 1 cut(s) 425
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 2 cut(s) 305, 423
HspAI GCGC 2 cut(s) 53, 106
Kzo9I GATC 4 cut(s) 58, 186, 222, 240
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 117, 308
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 326, 466
MalI GATC 4 cut(s) 60, 188, 224, 242
MboI GATC 4 cut(s) 58, 186, 222, 240
MboII GAAGA 1 cut(s) 85
MflI RGATCY 2 cut(s) 58, 222
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 4 cut(s) 231, 275, 291, 337
MluI ACGCGT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 5 cut(s) 199, 247, 254, 259, 281
MseI TTAA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 3 cut(s) 56, 156, 403
MspR9I CCNGG 3 cut(s) 285, 403, 404
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 53, 140
NciI CCSGG 2 cut(s) 403, 404
NdeII GATC 4 cut(s) 58, 186, 222, 240
NlaIII CATG 2 cut(s) 305, 423
NlaIV GGNNCC 2 cut(s) 83, 166
NmuCI GTSAC 2 cut(s) 326, 466
PagI TCATGA 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 4 cut(s) 35, 95, 368, 398
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 83, 166
PspPI GGNCC 2 cut(s) 216, 268
PsuI RGATCY 2 cut(s) 58, 222
PvuII CAGCTG 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 4 cut(s) 58, 186, 222, 240
Sau96I GGNCC 2 cut(s) 216, 268
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 3 cut(s) 285, 403, 404
SduI GDGCHC 1 cut(s) 86
SetI ASST 7 cut(s) 80, 118, 130, 263, 289, 397, 456
SfaNI GCATC 2 cut(s) 117, 308
SinI GGWCC 1 cut(s) 216
SmaI CCCGGG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 231, 275, 291, 337
SsiI CCGC 3 cut(s) 150, 168, 214
StyD4I CCNGG 3 cut(s) 283, 401, 402
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 239
TaqII GACCGA 1 cut(s) 107
TasI AATT 4 cut(s) 231, 275, 291, 337
TfiI GAWTC 4 cut(s) 35, 95, 368, 398
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 2 cut(s) 326, 466
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 2 cut(s) 326, 466
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 61
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 1 cut(s) 275
XmaI CCCGGG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.