Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29785645 .. 29788823

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG244000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGGATATGGGATACCATTTCTGGGACAACCGATTCACTGAAACGGAACGGGGCGGATCTAACGACGGCCCTGAAGAGCTGGTGCCCCACAACCGAATCGCTCATGCGCATCGTACCTGATGGAACAACTGTCAAGAACGCGTGCTCCACCGCTTACGGTTATGGCTCCGGCGTCAGGGATAATGTGATCCCCTACTTTCCAAACGAGGAAGTGCGGTCCAAGATCTACCAAATTGCCCCGATCCTCCTTAAAAACGCAACCTATGAGGGCCTCAAATTCGTTCCAGGTGGAATTACATTTCATGACTTTGCTGTCGGATGCTACCGCGACTATTTCAATTCCAATAAACAAGAAGTGGATGTGAAAGAATTGCAGGCTAAAGTATTGAGACTAGAGAAAGAATTAGGTGAATTCCGGGAAAGGAATAAGCCATGTGCAGATGTGAAGTCTCCCAGCATAAGCAACGTTCAGTCAGTTGCGACTCGTAAACCTGAAGATGTGATCAGAGTCTTCGTAATGAAGGAGTTCATGTGGAGGCAACTCACTGATGATCTAATGGTTCCGGTTGCACCCAGGAGGAGGGTAGTGACAAGTACAGGAGTGGATAAGTTGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.32

Weight (kDa)

8.28

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc16I	TGCGCA	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	84
AccII	CGCG	2 cut(s)	143, 330
AciI	CCGC	4 cut(s)	56, 153, 217, 328
AclI	AACGTT	1 cut(s)	468
AclWI	GGATC	3 cut(s)	66, 184, 238
AcsI	RAATTY	2 cut(s)	278, 413
AcuI	CTGAAG	2 cut(s)	95, 516
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	2 cut(s)	117, 598
AfiI	CCNNNNNNNGG	3 cut(s)	24, 177, 582
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	286, 575
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	2 cut(s)	385, 456
AlwI	GGATC	3 cut(s)	66, 184, 238
AoxI	GGCC	2 cut(s)	69, 271
ApoI	RAATTY	2 cut(s)	278, 413
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	70, 219, 271
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	149
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	288, 577
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	385, 456
BfaI	CTAG	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	225
Bme1390I	CCNGG	3 cut(s)	288, 419, 577
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	70, 219, 271
BmiI	GGNNCC	3 cut(s)	86, 169, 564
BmrFI	CCNGG	3 cut(s)	288, 419, 577
BmsI	GCATC	2 cut(s)	120, 311
BpiI	GAAGAC	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 177, 582
BseBI	CCWGG	2 cut(s)	288, 577
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	2 cut(s)	326, 367
BseLI	CCNNNNNNNGG	3 cut(s)	24, 177, 582
BseRI	GAGGAG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	2 cut(s)	143, 330
BshFI	GGCC	2 cut(s)	71, 273
BshNI	GGYRCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	171, 418, 566
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 177, 582
BsmAI	GTCTC	2 cut(s)	385, 456
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	71, 273
Bsp1286I	GDGCHC	2 cut(s)	89, 149
Bsp143I	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
BspACI	CCGC	4 cut(s)	56, 153, 217, 328
BspANI	GGCC	2 cut(s)	71, 273
BspFNI	CGCG	2 cut(s)	143, 330
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	86, 169, 564
BspPI	GGATC	3 cut(s)	66, 184, 238
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
BssNI	GRCGYC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	288, 577
Bst4CI	ACNGT	2 cut(s)	133, 161
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	145, 378
BstF5I	GGATG	2 cut(s)	326, 367
BstFNI	CGCG	2 cut(s)	143, 330
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	6 cut(s)	61, 192, 228, 246, 507, 556
BstMAI	GTCTC	2 cut(s)	385, 456
BstMBI	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
BstNI	CCWGG	2 cut(s)	288, 577
BstSCI	CCNGG	3 cut(s)	286, 417, 575
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	2 cut(s)	143, 330
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	2 cut(s)	58, 225
BstYI	RGATCY	2 cut(s)	58, 225
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	71, 273
BtsCI	GGATG	2 cut(s)	326, 367
BtsIMutI	CAGTG	2 cut(s)	38, 546
Cac8I	GCNNGC	2 cut(s)	145, 378
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	3 cut(s)	70, 219, 271
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	116, 597
CviAII	CATG	4 cut(s)	106, 305, 435, 532
CviJI	RGCY	6 cut(s)	71, 81, 168, 273, 380, 433
CviKI_1	RGCY	6 cut(s)	71, 81, 168, 273, 380, 433
CviQI	GTAC	2 cut(s)	116, 597
DpnI	GATC	6 cut(s)	60, 191, 227, 245, 506, 555
DpnII	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	95, 516
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	286, 575
FaeI	CATG	4 cut(s)	109, 308, 438, 535
FaiI	YATR	8 cut(s)	10, 107, 165, 267, 306, 436, 461, 533
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	105, 304, 434, 531
FbaI	TGATCA	1 cut(s)	504
FokI	GGATG	2 cut(s)	333, 374
FspAI	RTGCGCAY	1 cut(s)	110
FspBI	CTAG	1 cut(s)	395
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	71, 273
HapII	CCGG	3 cut(s)	171, 418, 566
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	109, 308, 438, 535
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	4 cut(s)	35, 98, 484, 510
HpaII	CCGG	3 cut(s)	171, 418, 566
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	320, 509
Hpy188III	TCNNGA	2 cut(s)	136, 305
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	133, 161
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	376, 440, 572
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	109, 308, 438, 535
HspAI	GCGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	152, 173
LweI	GCATC	2 cut(s)	120, 311
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	6 cut(s)	60, 191, 227, 245, 506, 555
MboI	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
MboII	GAAGA	3 cut(s)	88, 505, 509
MflI	RGATCY	2 cut(s)	58, 225
MhlI	GDGCHC	2 cut(s)	89, 149
MluCI	AATT	7 cut(s)	234, 278, 294, 340, 371, 404, 413
MluI	ACGCGT	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	478, 519
MmeI	TCCRAC	2 cut(s)	298, 594
MnlI	CCTC	8 cut(s)	202, 257, 262, 284, 531, 573, 576, 610
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	252
MspI	CCGG	3 cut(s)	171, 418, 566
MspR9I	CCNGG	3 cut(s)	288, 419, 577
MvaI	CCWGG	2 cut(s)	288, 577
MvnI	CGCG	2 cut(s)	143, 330
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
NlaIII	CATG	4 cut(s)	109, 308, 438, 535
NlaIV	GGNNCC	3 cut(s)	86, 169, 564
NmuCI	GTSAC	1 cut(s)	589
NsbI	TGCGCA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	35, 98
PfoI	TCCNGGA	1 cut(s)	417
PleI	GAGTC	2 cut(s)	478, 518
PpsI	GAGTC	2 cut(s)	478, 518
Psp1406I	AACGTT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	286, 575
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	286, 575
PspN4I	GGNNCC	3 cut(s)	86, 169, 564
PspPI	GGNCC	3 cut(s)	70, 219, 271
PsuI	RGATCY	2 cut(s)	58, 225
RsaI	GTAC	2 cut(s)	117, 598
RsaNI	GTAC	2 cut(s)	116, 597
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	6 cut(s)	58, 189, 225, 243, 504, 553
Sau96I	GGNCC	3 cut(s)	70, 219, 271
SchI	GAGTC	2 cut(s)	478, 519
ScrFI	CCNGG	3 cut(s)	288, 419, 577
SduI	GDGCHC	2 cut(s)	89, 149
SetI	ASST	7 cut(s)	83, 121, 266, 292, 412, 471, 496
SfaNI	GCATC	2 cut(s)	120, 311
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	7 cut(s)	234, 278, 294, 340, 371, 404, 413
SsiI	CCGC	4 cut(s)	56, 153, 217, 328
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	3 cut(s)	286, 417, 575
TaaI	ACNGT	2 cut(s)	133, 161
TaiI	ACGT	1 cut(s)	471
TasI	AATT	7 cut(s)	234, 278, 294, 340, 371, 404, 413
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	35, 98
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	45, 553
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	293, 520, 536
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	45, 553
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	2 cut(s)	278, 413
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.