Rmu_sc0008116.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008116.1
OG0005528
Physical Location & Seq
Forward (+)
36216 .. 36943
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008116.1_g000006.1.cds

Sequence Viewer

Length: 561 bp
atggggatatgggataccatttcttggacaaccgattcactgaaacggaacgcacctgatggaacagctgtgaagaacgcgtgctccaccgcttacagttatggctccgccgtcagggataatgtgatcccctactttccaaacgaggaagtgcggtccaagatctaccaaattgccccgatcctccttaaaaacgcaacctatgagggcctcaaattcgttccaggtggaattgcagttcatgacattgctttcgggtgctaccgcgactatttcaattccaataaacaagaagtggatgtgaaagaattgcaggctaaagtattgagactagagaaagagttaggtgaattgcgggaaaggaataagccatgtgcagatgtgaagtctcccagcataagcaacgttcagtcagttgcgactcgtaaacctgaagatgtgatcagagtcttcgtaatgaaggagttcatgtggaggcaactcactgatgatctaatggttccggttgcacccaggaagagggtagtgacaagtacaggagtggataagatggaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.05

Weight (kDa)

8.36

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 24
AccII CGCG 2 cut(s) 80, 267
AciI CCGC 5 cut(s) 90, 108, 154, 265, 355
AclI AACGTT 1 cut(s) 405
AclWI GGATC 2 cut(s) 121, 175
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 3 cut(s) 24, 114, 519
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 223, 512
AloI GAACNNNNNNTCC 4 cut(s) 68, 100, 222, 254
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 322, 393
AlwI GGATC 2 cut(s) 121, 175
AoxI GGCC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 464
AspS9I GGNCC 2 cut(s) 156, 208
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 86
BccI CCATC 2 cut(s) 53, 544
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 225, 514
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 322, 393
BfaI CTAG 1 cut(s) 332
BfuI GTATCC 1 cut(s) 7
BglII AGATCT 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 225, 514
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 156, 208
BmiI GGNNCC 2 cut(s) 106, 501
BmrFI CCNGG 2 cut(s) 225, 514
BpiI GAAGAC 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 114, 519
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 225, 514
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 24, 114, 519
BseMI GCAATG 1 cut(s) 246
BseYI CCCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 2 cut(s) 80, 267
BshFI GGCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 3 cut(s) 24, 114, 519
BsmAI GTCTC 2 cut(s) 322, 393
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 5 cut(s) 126, 162, 180, 441, 490
BspACI CCGC 5 cut(s) 90, 108, 154, 265, 355
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 2 cut(s) 80, 267
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 106, 501
BspPI GGATC 2 cut(s) 121, 175
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 5 cut(s) 126, 162, 180, 441, 490
Bst2UI CCWGG 2 cut(s) 225, 514
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 82, 315
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 2 cut(s) 80, 267
BstKTI GATC 5 cut(s) 129, 165, 183, 444, 493
BstMAI GTCTC 2 cut(s) 322, 393
BstMBI GATC 5 cut(s) 126, 162, 180, 441, 490
BstNI CCWGG 2 cut(s) 225, 514
BstSCI CCNGG 2 cut(s) 223, 512
BstUI CGCG 2 cut(s) 80, 267
BstV2I GAAGAC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 38, 483
Cac8I GCNNGC 2 cut(s) 82, 315
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 156, 208
Csp6I GTAC 1 cut(s) 534
CviAII CATG 3 cut(s) 242, 372, 469
CviJI RGCY 5 cut(s) 68, 105, 210, 317, 370
CviKI_1 RGCY 5 cut(s) 68, 105, 210, 317, 370
CviQI GTAC 1 cut(s) 534
DpnI GATC 5 cut(s) 128, 164, 182, 443, 492
DpnII GATC 5 cut(s) 126, 162, 180, 441, 490
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 223, 512
FaeI CATG 3 cut(s) 245, 375, 472
FaiI YATR 7 cut(s) 10, 102, 204, 243, 373, 398, 470
FatI CATG 3 cut(s) 241, 371, 468
FauI CCCGC 1 cut(s) 348
FbaI TGATCA 1 cut(s) 441
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 332
GsaI CCCAGC 1 cut(s) 396
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 503
Hin1II CATG 3 cut(s) 245, 375, 472
HinfI GANTC 3 cut(s) 35, 421, 447
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 446
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 236, 313, 377, 509
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 245, 375, 472
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 5 cut(s) 126, 162, 180, 441, 490
LmnI GCTCC 2 cut(s) 89, 110
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 526
MalI GATC 5 cut(s) 128, 164, 182, 443, 492
MboI GATC 5 cut(s) 126, 162, 180, 441, 490
MboII GAAGA 4 cut(s) 85, 442, 446, 529
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 6 cut(s) 171, 215, 231, 277, 308, 350
MluI ACGCGT 1 cut(s) 78
MlyI GAGTC 2 cut(s) 415, 456
MnlI CCTC 7 cut(s) 139, 194, 199, 221, 468, 513, 547
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 225, 514
MvaI CCWGG 2 cut(s) 225, 514
MvnI CGCG 2 cut(s) 80, 267
NdeII GATC 5 cut(s) 126, 162, 180, 441, 490
NlaIII CATG 3 cut(s) 245, 375, 472
NlaIV GGNNCC 2 cut(s) 106, 501
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 24
PleI GAGTC 2 cut(s) 415, 455
PpsI GAGTC 2 cut(s) 415, 455
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 223, 512
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 2 cut(s) 223, 512
PspN4I GGNNCC 2 cut(s) 106, 501
PspPI GGNCC 2 cut(s) 156, 208
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 5 cut(s) 126, 162, 180, 441, 490
Sau96I GGNCC 2 cut(s) 156, 208
SchI GAGTC 2 cut(s) 415, 456
ScrFI CCNGG 2 cut(s) 225, 514
SduI GDGCHC 1 cut(s) 86
SetI ASST 7 cut(s) 58, 70, 203, 229, 349, 408, 433
SinI GGWCC 1 cut(s) 156
Sse9I AATT 6 cut(s) 171, 215, 231, 277, 308, 350
SsiI CCGC 5 cut(s) 90, 108, 154, 265, 355
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 223, 512
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 408
TasI AATT 6 cut(s) 171, 215, 231, 277, 308, 350
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 45, 490
TseFI GTSAC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 230, 457, 473
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 2 cut(s) 45, 490
Van91I CCANNNNNTGG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.