Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29727775 .. 29841619

Gene Structure 113845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG275200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGATATGGGATACCATTTCTGGGACACTGAAACGGAACGCGCCGGCTCTAACGCCCCTGAAGAGCTGGGGGCTGAAACGGAACGCGCCGGATCTAACACCCCTGAAGAGCTGGTTCCCCTCAACCGATTCACTGAAACGGAACGCGCCGGATCTAACGCCCCTGAAGAGCTGGTGCCCCACAACCGATTCGCTCAAGCGAATCGCACCTGATGTAAGAGCTGCCAAGAACGTCTGCTCCACCGCTTACGGTTATGGCTCCGCCGCCGTTACCAAAGTCGACGGCGCCGTCAGGGATAACTTGATCCCCTACTTCCGAAACGAGGAAGCATGGTCCAAGATCGCCCAATTCGGCACGATCGTCGCTAAAAACGCAACCTATGAGGGCCTCAAACTCGTTCCAGGTGGAAGTACATTTTATAACATTGCTGCCAGTTCCATCCGTGATTTTAACAATTCCAATAAGGAAGAAGTGGATGTGAAAGCATTGCAGGCTGAACTTTTGAGTCTGAAGAAAGAATTGAGTGAATACCGGGAAATGAATAAGCCATGTGCAGATGTGAAGTCTCCCAGCATAACCAGCGTTCAATCAGTTGTGACTTGTAAACCTGAAGATGTGATCAATGTCTTTATTATGAAGGAGTTCATGGGCAGGCAATTCTGTGGTGATCTATTGGTTCCAGTTGCGCCCAGGAAGAGGGCAGTGACAAGTACGAGAGCGGATAAGACAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.1

Weight (kDa)

9.21

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB1I	GGYRCC	2 cut(s)	177, 287
AccBSI	CCGCTC	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	3 cut(s)	44, 89, 149
AciI	CCGC	4 cut(s)	246, 264, 267, 722
AclWI	GGATC	3 cut(s)	102, 162, 301
AcuI	CTGAAG	5 cut(s)	83, 128, 188, 533, 633
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	415, 715
AfiI	CCNNNNNNNGG	3 cut(s)	24, 325, 699
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	403, 692
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	69, 114, 174, 224
AluI	AGCT	4 cut(s)	69, 114, 174, 224
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	102, 162, 301
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	224, 431
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	5 cut(s)	46, 91, 151, 290, 691
AspS9I	GGNCC	2 cut(s)	336, 388
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	2 cut(s)	177, 287
BbvI	GCAGC	2 cut(s)	211, 418
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	3 cut(s)	254, 275, 301
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	2 cut(s)	405, 694
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	3 cut(s)	225, 267, 432
BlsI	GCNGC	3 cut(s)	226, 268, 433
Bme1390I	CCNGG	3 cut(s)	405, 536, 694
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	336, 388
BmiI	GGNNCC	5 cut(s)	119, 179, 262, 289, 681
BmrFI	CCNGG	3 cut(s)	405, 536, 694
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 325, 699
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	435, 683
Bse3DI	GCAATG	2 cut(s)	426, 488
BseBI	CCWGG	2 cut(s)	405, 694
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	2 cut(s)	441, 484
BseLI	CCNNNNNNNGG	3 cut(s)	24, 325, 699
BseMI	GCAATG	2 cut(s)	426, 488
BseNI	ACTGG	2 cut(s)	435, 683
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	211, 418
BseYI	CCCAGC	2 cut(s)	69, 572
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	3 cut(s)	44, 89, 149
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	2 cut(s)	177, 287
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	4 cut(s)	47, 92, 152, 535
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 325, 699
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
BspACI	CCGC	4 cut(s)	246, 264, 267, 722
BspANI	GGCC	1 cut(s)	390
BspFNI	CGCG	3 cut(s)	44, 89, 149
BspLI	GGNNCC	5 cut(s)	119, 179, 262, 289, 681
BspPI	GGATC	3 cut(s)	102, 162, 301
BspQI	GCTCTTC	3 cut(s)	59, 104, 164
BspT107I	GGYRCC	2 cut(s)	177, 287
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	2 cut(s)	426, 488
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	435, 683
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	405, 694
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	4 cut(s)	59, 104, 164, 692
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	48, 495, 656
BstF5I	GGATG	2 cut(s)	441, 484
BstFNI	CGCG	3 cut(s)	44, 89, 149
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	5 cut(s)	46, 91, 151, 290, 691
BstKTI	GATC	7 cut(s)	97, 157, 309, 345, 363, 624, 673
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 494, 582
BstNI	CCWGG	2 cut(s)	405, 694
BstSCI	CCNGG	3 cut(s)	403, 534, 692
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	3 cut(s)	44, 89, 149
BstV1I	GCAGC	2 cut(s)	211, 418
BstX2I	RGATCY	2 cut(s)	94, 154
BstYI	RGATCY	2 cut(s)	94, 154
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	441, 484
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	3 cut(s)	29, 134, 711
Cac8I	GCNNGC	3 cut(s)	48, 495, 656
CfoI	GCGC	5 cut(s)	46, 91, 151, 290, 691
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	336, 388
Csp6I	GTAC	2 cut(s)	414, 714
CviAII	CATG	3 cut(s)	333, 552, 649
CviQI	GTAC	2 cut(s)	414, 714
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	7 cut(s)	96, 156, 308, 344, 362, 623, 672
DpnII	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	4 cut(s)	59, 104, 164, 692
EarI	CTCTTC	4 cut(s)	59, 104, 164, 692
EciI	GGCGGA	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	5 cut(s)	83, 128, 188, 533, 633
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	403, 692
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
FaeI	CATG	3 cut(s)	336, 555, 652
FaiI	YATR	9 cut(s)	10, 258, 334, 384, 423, 553, 578, 638, 650
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	332, 551, 648
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	225, 267, 432
FokI	GGATG	2 cut(s)	428, 491
Fsp4HI	GCNGC	3 cut(s)	225, 267, 432
GlaI	GCGC	5 cut(s)	45, 90, 150, 289, 690
GluI	GCNGC	3 cut(s)	225, 267, 432
GsaI	CCCAGC	2 cut(s)	73, 576
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	4 cut(s)	47, 92, 152, 535
HhaI	GCGC	5 cut(s)	46, 91, 151, 290, 691
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	336, 555, 652
Hin6I	GCGC	5 cut(s)	44, 89, 149, 288, 689
HinP1I	GCGC	5 cut(s)	44, 89, 149, 288, 689
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	131, 191, 204, 508
HpaII	CCGG	4 cut(s)	47, 92, 152, 535
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	283, 608
Hpy188I	TCNGA	2 cut(s)	320, 513
Hpy8I	GTNNAC	2 cut(s)	283, 608
Hpy99I	CGWCG	2 cut(s)	287, 368
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	493, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 494, 582
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	336, 555, 652
HspAI	GCGC	5 cut(s)	44, 89, 149, 288, 689
KasI	GGCGCC	1 cut(s)	287
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
LguI	GCTCTTC	3 cut(s)	59, 104, 164
LmnI	GCTCC	2 cut(s)	245, 266
Lsp1109I	GCAGC	2 cut(s)	211, 418
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	271, 598, 706
MalI	GATC	7 cut(s)	96, 156, 308, 344, 362, 623, 672
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
MboII	GAAGA	7 cut(s)	76, 121, 181, 482, 526, 626, 709
MflI	RGATCY	2 cut(s)	94, 154
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	4 cut(s)	350, 457, 521, 659
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	6 cut(s)	133, 319, 379, 401, 693, 727
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	1 cut(s)	453
MspI	CCGG	4 cut(s)	47, 92, 152, 535
MspR9I	CCNGG	3 cut(s)	405, 536, 694
MvaI	CCWGG	2 cut(s)	405, 694
MvnI	CGCG	3 cut(s)	44, 89, 149
MwoI	GCNNNNNNNGC	3 cut(s)	374, 494, 582
NaeI	GCCGGC	1 cut(s)	48
NarI	GGCGCC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	336, 555, 652
NlaIV	GGNNCC	5 cut(s)	119, 179, 262, 289, 681
NmuCI	GTSAC	2 cut(s)	598, 706
PciSI	GCTCTTC	3 cut(s)	59, 104, 164
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 360
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	131, 191, 204
PkrI	GCNGC	3 cut(s)	226, 268, 433
Ple19I	CGATCG	1 cut(s)	363
PleI	GAGTC	1 cut(s)	516
PluTI	GGCGCC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	403, 692
PspFI	CCCAGC	2 cut(s)	69, 572
PspGI	CCWGG	2 cut(s)	403, 692
PspN4I	GGNNCC	5 cut(s)	119, 179, 262, 289, 681
PspPI	GGNCC	2 cut(s)	336, 388
PsuI	RGATCY	2 cut(s)	94, 154
PvuI	CGATCG	1 cut(s)	363
RsaI	GTAC	2 cut(s)	415, 715
RsaNI	GTAC	2 cut(s)	414, 714
SalI	GTCGAC	1 cut(s)	281
SapI	GCTCTTC	3 cut(s)	59, 104, 164
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	225, 267, 432
Sau3AI	GATC	7 cut(s)	94, 154, 306, 342, 360, 621, 670
Sau96I	GGNCC	2 cut(s)	336, 388
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	405, 536, 694
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	9 cut(s)	71, 116, 176, 214, 226, 237, 383, 409, 613
SfoI	GGCGCC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	350, 457, 521, 659
SsiI	CCGC	4 cut(s)	246, 264, 267, 722
SspDI	GGCGCC	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	403, 534, 692
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	350, 457, 521, 659
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	131, 191, 204
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	36, 141, 711
TseFI	GTSAC	2 cut(s)	598, 706
TseI	GCWGC	2 cut(s)	224, 431
Tsp45I	GTSAC	2 cut(s)	598, 706
TspDTI	ATGAA	3 cut(s)	557, 637, 653
TspGWI	ACGGA	4 cut(s)	52, 97, 157, 434
TspRI	CASTG	3 cut(s)	36, 141, 711
VpaK11BI	GGWCC	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.