Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

11271534 .. 11272507

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G189500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAAGGGGGAGAGGGCGGTGGCTATGAAGATAGATAGTATTCTCTTCTACATCCAGATTGTGATTCGAGAATTCCAAGAAGTAATTTTTATTTTTGCACCTCACAACTGCAACAAAGCTGCTCATGAGGTTGCAACTTTTGCGTGTAGGAAAAAATTTGCACCAAATCTTCACTTAAGCTTTGATCTACTGAGAAAAATGGGGATATGGGATTTCATTTCCGGGACGACCGATTCACTGAAACGCAACGCTCTGAATCAAACGGCCGAGAAGAACTGGTGCTCCACACCTGATTCCTTGAAGAACGTGTGCTCCACCGCTTACGATTATGGGTCAGCCACCTTTATCCATATCGATAGCACCGTCAGGGGTAACCTGGACCACTACCGTCAGGACGAGGAAGCCCGGTCCAAGATCCTCCAGTTGGGCAAGATCATCGTTACACACGCCGCCATCGTGGGCCTCAAAACCATCCCAGGTTACAATATTGTTAATAATTCAATCAAAGACATGAAGGACTCCGATAAACAAGAAGTGGATGTGGAGGCATTGCAGGCTGATGTACGCAGATTGGATAAAGAACTCAGCAAATACAGAAACTCCATGAGCAAGTCCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.53

Weight (kDa)

8.97

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 321, 453
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	74, 158
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflII	CTTAAG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	304, 504
AjnI	CCWGG	2 cut(s)	378, 478
AloI	GAACNNNNNNTCC	4 cut(s)	269, 299, 301, 331
AluBI	AGCT	2 cut(s)	122, 183
AluI	AGCT	2 cut(s)	122, 183
Alw21I	GWGCWC	2 cut(s)	287, 317
AlwI	GGATC	1 cut(s)	412
AoxI	GGCC	2 cut(s)	267, 463
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	74, 158
AspS9I	GGNCC	3 cut(s)	382, 411, 463
AsuC2I	CCSGG	2 cut(s)	226, 409
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	382, 411
Bbv12I	GWGCWC	2 cut(s)	287, 317
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	464, 482
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	2 cut(s)	380, 480
BcnI	CCSGG	2 cut(s)	226, 409
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	2 cut(s)	123, 453
BlsI	GCNGC	2 cut(s)	124, 454
Bme1390I	CCNGG	4 cut(s)	226, 380, 409, 480
Bme18I	GGWCC	2 cut(s)	382, 411
BmgT120I	GGNCC	3 cut(s)	382, 411, 463
BmrFI	CCNGG	4 cut(s)	226, 380, 409, 480
BpmI	CTGGAG	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	226, 409
Bsa29I	ATCGAT	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	478
BsaXI	ACNNNNNCTCC	6 cut(s)	269, 299, 299, 329, 587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	284, 424
Bse3DI	GCAATG	1 cut(s)	551
BseBI	CCWGG	2 cut(s)	380, 480
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	3 cut(s)	54, 474, 547
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	185, 601
BseNI	ACTGG	2 cut(s)	284, 424
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	109
Bsh1285I	CGRYCG	2 cut(s)	234, 270
BshFI	GGCC	2 cut(s)	269, 465
BshVI	ATCGAT	1 cut(s)	357
BsiEI	CGRYCG	2 cut(s)	234, 270
BsiHKAI	GWGCWC	2 cut(s)	287, 317
BsiSI	CCGG	2 cut(s)	225, 409
BslFI	GGGAC	2 cut(s)	241, 601
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	241, 601
BsnI	GGCC	2 cut(s)	269, 465
Bsp1286I	GDGCHC	2 cut(s)	287, 317
Bsp143I	GATC	3 cut(s)	187, 417, 435
BspACI	CCGC	3 cut(s)	20, 321, 453
BspANI	GGCC	2 cut(s)	269, 465
BspCNI	CTCAG	2 cut(s)	186, 600
BspDI	ATCGAT	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	127
BspPI	GGATC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	284, 424
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	3 cut(s)	187, 417, 435
Bst2UI	CCWGG	2 cut(s)	380, 480
Bst4CI	ACNGT	2 cut(s)	367, 392
Bst6I	CTCTTC	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	194, 587
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	54, 474, 547
BstKTI	GATC	3 cut(s)	190, 420, 438
BstMBI	GATC	3 cut(s)	187, 417, 435
BstMCI	CGRYCG	2 cut(s)	234, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 557
BstNI	CCWGG	2 cut(s)	380, 480
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	224, 378, 407, 478
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BstZI	CGGCCG	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	269, 465
BsuTUI	ATCGAT	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	54, 474, 547
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	558
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	382, 411, 463
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	3 cut(s)	128, 514, 607
CviJI	RGCY	8 cut(s)	26, 122, 183, 269, 341, 407, 465, 560
CviKI_1	RGCY	8 cut(s)	26, 122, 183, 269, 341, 407, 465, 560
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	2 cut(s)	194, 587
DpnI	GATC	3 cut(s)	189, 419, 437
DpnII	GATC	3 cut(s)	187, 417, 435
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	382, 411
Eco52I	CGGCCG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	378, 478
FaeI	CATG	3 cut(s)	131, 517, 610
FaiI	YATR	7 cut(s)	29, 129, 211, 333, 354, 515, 608
FaqI	GGGAC	2 cut(s)	241, 601
FatI	CATG	3 cut(s)	127, 513, 606
Fnu4HI	GCNGC	2 cut(s)	123, 453
FokI	GGATG	3 cut(s)	41, 461, 554
Fsp4HI	GCNGC	2 cut(s)	123, 453
GluI	GCNGC	2 cut(s)	123, 453
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	269, 465
HapII	CCGG	2 cut(s)	225, 409
Hin1II	CATG	3 cut(s)	131, 517, 610
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	5 cut(s)	67, 236, 259, 296, 521
HpaII	CCGG	2 cut(s)	225, 409
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	258, 526
Hpy188III	TCNNGA	5 cut(s)	58, 71, 128, 395, 618
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	367, 392
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	5 cut(s)	101, 114, 137, 164, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 557
HpyF3I	CTNAG	2 cut(s)	194, 587
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	131, 517, 610
Kzo9I	GATC	3 cut(s)	187, 417, 435
LmnI	GCTCC	2 cut(s)	290, 320
Lsp1109I	GCAGC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	374, 442, 482
MalI	GATC	3 cut(s)	189, 419, 437
MboI	GATC	3 cut(s)	187, 417, 435
MboII	GAAGA	5 cut(s)	40, 43, 164, 286, 316
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	287, 317
MluCI	AATT	4 cut(s)	74, 87, 158, 499
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	7 cut(s)	9, 114, 124, 394, 431, 476, 541
MseI	TTAA	2 cut(s)	179, 495
MspCI	CTTAAG	1 cut(s)	178
MspI	CCGG	2 cut(s)	225, 409
MspR9I	CCNGG	4 cut(s)	226, 380, 409, 480
MvaI	CCWGG	2 cut(s)	380, 480
MwoI	GCNNNNNNNGC	2 cut(s)	143, 557
NciI	CCSGG	2 cut(s)	226, 409
NdeII	GATC	3 cut(s)	187, 417, 435
NlaIII	CATG	3 cut(s)	131, 517, 610
NmeAIII	GCCGAG	1 cut(s)	295
PagI	TCATGA	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 456
PfeI	GAWTC	4 cut(s)	67, 236, 259, 296
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	124, 454
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	378, 478
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	378, 478
PspPI	GGNCC	3 cut(s)	382, 411, 463
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	179, 495
SatI	GCNGC	2 cut(s)	123, 453
Sau3AI	GATC	3 cut(s)	187, 417, 435
Sau96I	GGNCC	3 cut(s)	382, 411, 463
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	4 cut(s)	226, 380, 409, 480
SduI	GDGCHC	2 cut(s)	287, 317
SetI	ASST	9 cut(s)	106, 124, 135, 185, 295, 312, 347, 381, 484
SinI	GGWCC	2 cut(s)	382, 411
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	4 cut(s)	74, 87, 158, 499
SsiI	CCGC	3 cut(s)	20, 321, 453
SspI	AATATT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	224, 378, 407, 478
TaaI	ACNGT	2 cut(s)	367, 392
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	70, 357
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	4 cut(s)	74, 87, 158, 499
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	4 cut(s)	67, 236, 259, 296
Tru1I	TTAA	2 cut(s)	179, 495
Tru9I	TTAA	2 cut(s)	179, 495
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	44, 208, 530
TspRI	CASTG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	382, 411
XapI	RAATTY	2 cut(s)	74, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.