Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

30579080 .. 30586119

Gene Structure 7040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGATATGGGATACCATTTCTTGGACAATCGATTCACTGAAACGGAACGCACCTGATGGAACAGCTGTGAAGAACGCGTGCTCCACCGCTTACGGTTATGGCTCCGCCGTCAGGGATAATGTGATCCCCTACTTTCCAAACGAGGAAGTGCGATCCAAGATCTACCAAATTGCCCCGATCCTCCTTAAAAACGCAACCTATGAGGGCCTCAAATTCGTTCCAGGTGGAATTACATTTCATGACTTTGCTTTCGGATGCTACCGCGACTATTTCAATTCCAATAAACAAGAAGTGGATGTGAAAGAATTGCAGGCTAAAGTATTGAGACTAGAGAAAGAATTAGGTGAATTCCGGGAAAGGAATAAGCCATGTGCAGATGTGAAGTCTCCCAGCATAAGCAACGTTCAGTCAGTTGCGACTCGTAAACCTGAAGATGTGATCAGAGTCTTCGTAATGAAGGAGTTCATGTGGAGGCATCTCACTGATGATCTAATGGTTCCGGTTGCACCCAGGAAGAGGGTAGTGACAAGTACAGGAGTGGATATGATGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.19

Weight (kDa)

7.67

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	24
AccII	CGCG	2 cut(s)	80, 267
AciI	CCGC	3 cut(s)	90, 108, 265
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	3 cut(s)	121, 150, 175
AcsI	RAATTY	2 cut(s)	215, 350
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	3 cut(s)	24, 114, 519
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	223, 512
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	322, 393
AlwI	GGATC	3 cut(s)	121, 150, 175
AoxI	GGCC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	215, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	2 cut(s)	53, 544
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	225, 514
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	322, 393
BfaI	CTAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	162
Bme1390I	CCNGG	3 cut(s)	225, 356, 514
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	106, 501
BmrFI	CCNGG	3 cut(s)	225, 356, 514
BmsI	GCATC	2 cut(s)	248, 487
BpiI	GAAGAC	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	356
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 114, 519
BseBI	CCWGG	2 cut(s)	225, 514
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	2 cut(s)	263, 304
BseLI	CCNNNNNNNGG	3 cut(s)	24, 114, 519
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	80, 267
BshFI	GGCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	355, 503
BslI	CCNNNNNNNGG	3 cut(s)	24, 114, 519
BsmAI	GTCTC	2 cut(s)	322, 393
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
BspACI	CCGC	3 cut(s)	90, 108, 265
BspANI	GGCC	1 cut(s)	210
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	80, 267
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	106, 501
BspPI	GGATC	3 cut(s)	121, 150, 175
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
Bst2UI	CCWGG	2 cut(s)	225, 514
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	82, 315
BstF5I	GGATG	2 cut(s)	263, 304
BstFNI	CGCG	2 cut(s)	80, 267
BstKTI	GATC	6 cut(s)	129, 158, 165, 183, 444, 493
BstMAI	GTCTC	2 cut(s)	322, 393
BstMBI	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
BstNI	CCWGG	2 cut(s)	225, 514
BstSCI	CCNGG	3 cut(s)	223, 354, 512
BstUI	CGCG	2 cut(s)	80, 267
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	263, 304
BtsIMutI	CAGTG	2 cut(s)	38, 483
Cac8I	GCNNGC	2 cut(s)	82, 315
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	3 cut(s)	242, 372, 469
CviJI	RGCY	5 cut(s)	68, 105, 210, 317, 370
CviKI_1	RGCY	5 cut(s)	68, 105, 210, 317, 370
CviQI	GTAC	1 cut(s)	534
DpnI	GATC	6 cut(s)	128, 157, 164, 182, 443, 492
DpnII	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	223, 512
FaeI	CATG	3 cut(s)	245, 375, 472
FaiI	YATR	8 cut(s)	10, 102, 204, 243, 373, 398, 470, 548
FatI	CATG	3 cut(s)	241, 371, 468
FbaI	TGATCA	1 cut(s)	441
FokI	GGATG	2 cut(s)	270, 311
FspBI	CTAG	1 cut(s)	332
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	355, 503
Hin1II	CATG	3 cut(s)	245, 375, 472
HinfI	GANTC	3 cut(s)	35, 421, 447
HpaII	CCGG	2 cut(s)	355, 503
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	257, 446
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	313, 377, 509
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	245, 375, 472
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
LmnI	GCTCC	2 cut(s)	89, 110
LweI	GCATC	2 cut(s)	248, 487
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	6 cut(s)	128, 157, 164, 182, 443, 492
MboI	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
MboII	GAAGA	4 cut(s)	85, 442, 446, 529
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	7 cut(s)	171, 215, 231, 277, 308, 341, 350
MluI	ACGCGT	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	415, 456
MnlI	CCTC	7 cut(s)	139, 194, 199, 221, 468, 513, 547
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	355, 503
MspR9I	CCNGG	3 cut(s)	225, 356, 514
MvaI	CCWGG	2 cut(s)	225, 514
MvnI	CGCG	2 cut(s)	80, 267
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
NlaIII	CATG	3 cut(s)	245, 375, 472
NlaIV	GGNNCC	2 cut(s)	106, 501
NmuCI	GTSAC	1 cut(s)	526
PagI	TCATGA	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	354
PleI	GAGTC	2 cut(s)	415, 455
PpsI	GAGTC	2 cut(s)	415, 455
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	223, 512
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	223, 512
PspN4I	GGNNCC	2 cut(s)	106, 501
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	6 cut(s)	126, 155, 162, 180, 441, 490
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	415, 456
ScrFI	CCNGG	3 cut(s)	225, 356, 514
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	7 cut(s)	58, 70, 203, 229, 349, 408, 433
SfaNI	GCATC	2 cut(s)	248, 487
Sse9I	AATT	7 cut(s)	171, 215, 231, 277, 308, 341, 350
SsiI	CCGC	3 cut(s)	90, 108, 265
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	223, 354, 512
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	171, 215, 231, 277, 308, 341, 350
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	45, 490
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	230, 457, 473
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	45, 490
Van91I	CCANNNNNTGG	1 cut(s)	24
XapI	RAATTY	2 cut(s)	215, 350
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.