Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29639766 .. 29641235

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGGATATGGGATATCGTTTCTGGGGCATCCGATTCACTGAAACGGAACGTGCCGGATCAAACGCCCGTTACCAAGGTCGCCAAGAACGTCTTCTCCACCGCTTACGGTTTTGGCTCCTCCGCAGTTACCAAGGTCGACGGCGCCGTCAGGGATAAAATGATCCCCTACTTTCGAAACGAGCAAGTGTGGTCCAAGATCTCCCTATATGTGGCCCGATCCTCCTTAGAAACGGAGCCTCTGAGTGGAAATACATTTTATAACTTTGCTGCCGGATGCTTCTGTGACTATAACAATTCTAATAAACAAAAAGTGGATGTGAAAGAATTGCTGGCTAAAGTATCGAGACTAGAGAGAATTCGGCAATTCCGTGGTGATCCATTGGTTCCGGTTGCACCCAGGAAGATGGCAGTGACAAGTAAGAGAGTAAAGAAGACAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.54

Weight (kDa)

9.69

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	2 cut(s)	102, 123
AclWI	GGATC	4 cut(s)	66, 157, 213, 371
AcsI	RAATTY	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	211, 245
AjnI	CCWGG	1 cut(s)	398
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	4 cut(s)	66, 157, 213, 371
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	192, 214
AsuHPI	GGTGA	1 cut(s)	386
AsuII	TTCGAA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	85, 440
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	2 cut(s)	131, 157
BciT130I	CCWGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 214
BmiI	GGNNCC	4 cut(s)	118, 145, 237, 387
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	38, 266
BpiI	GAAGAC	2 cut(s)	85, 440
Bpu14I	TTCGAA	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	75, 132, 370, 398
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 245
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	4 cut(s)	75, 132, 370, 398
BseGI	GGATG	3 cut(s)	29, 281, 322
BseLI	CCNNNNNNNGG	2 cut(s)	211, 245
BseMII	CTCAG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	56, 273, 389
BslI	CCNNNNNNNGG	2 cut(s)	211, 245
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	58, 162, 198, 218, 376
BspACI	CCGC	2 cut(s)	102, 123
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	118, 145, 237, 387
BspPI	GGATC	4 cut(s)	66, 157, 213, 371
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	75, 132, 370, 398
BssMI	GATC	5 cut(s)	58, 162, 198, 218, 376
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	75, 132
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	226, 242
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	29, 281, 322
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	5 cut(s)	61, 165, 201, 221, 379
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	5 cut(s)	58, 162, 198, 218, 376
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	2 cut(s)	85, 440
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	29, 281, 322
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	38, 417
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	192, 214
CviJI	RGCY	4 cut(s)	117, 215, 238, 335
CviKI_1	RGCY	4 cut(s)	117, 215, 238, 335
DdeI	CTNAG	2 cut(s)	226, 242
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	5 cut(s)	60, 164, 200, 220, 378
DpnII	GATC	5 cut(s)	58, 162, 198, 218, 376
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	75, 132
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	75, 132
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	75, 132
FaiI	YATR	5 cut(s)	10, 208, 210, 261, 291
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	3 cut(s)	16, 288, 329
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	3 cut(s)	56, 273, 389
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	3 cut(s)	56, 273, 389
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	34, 243
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	2 cut(s)	51, 90
HpyCH4V	TGCA	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	226, 242
HpySE526I	ACGT	2 cut(s)	51, 90
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	5 cut(s)	58, 162, 198, 218, 376
LmnI	GCTCC	2 cut(s)	122, 235
LpnPI	CCDG	8 cut(s)	9, 69, 136, 286, 317, 385, 402, 412
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	38, 266
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	51, 90
MaeIII	GTNAC	4 cut(s)	70, 127, 284, 412
MalI	GATC	5 cut(s)	60, 164, 200, 220, 378
MboI	GATC	5 cut(s)	58, 162, 198, 218, 376
MboII	GAAGA	3 cut(s)	85, 415, 445
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	4 cut(s)	295, 326, 357, 365
Mly113I	GGCGCC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	130, 232, 249, 433
MroXI	GAANNNNTTC	1 cut(s)	92
MspI	CCGG	3 cut(s)	56, 273, 389
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	5 cut(s)	58, 162, 198, 218, 376
NlaIV	GGNNCC	4 cut(s)	118, 145, 237, 387
NmuCI	GTSAC	2 cut(s)	284, 412
NspV	TTCGAA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 144, 367
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	271
PluTI	GGCGCC	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	4 cut(s)	118, 145, 237, 387
PspPI	GGNCC	2 cut(s)	192, 214
PsuI	RGATCY	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	137
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	5 cut(s)	58, 162, 198, 218, 376
Sau96I	GGNCC	2 cut(s)	192, 214
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	4 cut(s)	54, 81, 93, 138
SfaNI	GCATC	2 cut(s)	38, 266
SfoI	GGCGCC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	4 cut(s)	295, 326, 357, 365
SsiI	CCGC	2 cut(s)	102, 123
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	75, 132
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	2 cut(s)	54, 93
TaqI	TCGA	3 cut(s)	138, 175, 344
TasI	AATT	4 cut(s)	295, 326, 357, 365
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	2 cut(s)	45, 417
TseFI	GTSAC	2 cut(s)	284, 412
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	2 cut(s)	284, 412
TspGWI	ACGGA	3 cut(s)	61, 248, 359
TspRI	CASTG	2 cut(s)	45, 417
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.