Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Forward (+)

34569514 .. 34570340

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1237800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATCCCGCCGTCTGGGGCAACTTGAACCACTTATTTCAGGGTGAGGATGCCTGGGCCAAGATGGTCCGGTTGGGCACCAGGATCGTAAAACACGCAACTGAGGAGGGCCGTAATTGTATTCCAGGTTACAAAATTGTTGCGAGATCACTCGGCGACCTAAACGGATCTGATGAAACAGAAGTGGACGTGAAGGCACTGCGGGCGGATGTACGCCGGTTGGAGAAAGAGTTCAACGAATACAAGAAGGAAGTAGATGAGCTACAAGTGGAAGTGAAGGCATTGGCTGCTGATCAACTCAGATTGGAGAAACAACTCTGCGAGTGTAGGATAAATAAGGCAAGTGCGGATTTAAATATCAGGTCTTGCTTGCTCTATGTAATTGGTTTTTCTCTCTGCTTCTGCATCTCTTTTGCTTGGGGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.05

Weight (kDa)

5.75

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	77, 422
AciI	CCGC	4 cut(s)	9, 202, 206, 347
AclWI	GGATC	3 cut(s)	12, 92, 175
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	28, 235
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	3 cut(s)	53, 80, 124
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
AlwI	GGATC	3 cut(s)	12, 92, 175
AoxI	GGCC	2 cut(s)	57, 109
ApeKI	GCWGC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	57, 67, 109
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	77, 422
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	3 cut(s)	55, 82, 126
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	1 cut(s)	427
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	3 cut(s)	55, 82, 126
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	57, 67, 109
BmiI	GGNNCC	3 cut(s)	6, 79, 424
BmrFI	CCNGG	3 cut(s)	55, 82, 126
BmsI	GCATC	2 cut(s)	40, 414
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	216
BseBI	CCWGG	3 cut(s)	55, 82, 126
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	55, 214
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	93, 313
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	2 cut(s)	59, 111
BshNI	GGYRCC	2 cut(s)	77, 422
BsiSI	CCGG	2 cut(s)	70, 217
BslI	CCNNNNNNNGG	1 cut(s)	15
BsnI	GGCC	2 cut(s)	59, 111
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	4, 84, 146, 167, 292
BspACI	CCGC	4 cut(s)	9, 202, 206, 347
BspANI	GGCC	2 cut(s)	59, 111
BspCNI	CTCAG	2 cut(s)	94, 312
BspLI	GGNNCC	3 cut(s)	6, 79, 424
BspPI	GGATC	3 cut(s)	12, 92, 175
BspT107I	GGYRCC	2 cut(s)	77, 422
BsrFI	RCCGGY	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	5 cut(s)	4, 84, 146, 167, 292
Bst2UI	CCWGG	3 cut(s)	55, 82, 126
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	204, 371
BstDEI	CTNAG	2 cut(s)	102, 299
BstF5I	GGATG	2 cut(s)	55, 214
BstKTI	GATC	5 cut(s)	7, 87, 149, 170, 295
BstMBI	GATC	5 cut(s)	4, 84, 146, 167, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 287, 422
BstNI	CCWGG	3 cut(s)	55, 82, 126
BstSCI	CCNGG	3 cut(s)	53, 80, 124
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	2 cut(s)	4, 167
BstYI	RGATCY	2 cut(s)	4, 167
BsuRI	GGCC	2 cut(s)	59, 111
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	55, 214
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	204, 371
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	57, 67, 109
Csp6I	GTAC	1 cut(s)	212
CviJI	RGCY	4 cut(s)	59, 111, 262, 287
CviKI_1	RGCY	4 cut(s)	59, 111, 262, 287
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	102, 299
DpnI	GATC	5 cut(s)	6, 86, 148, 169, 294
DpnII	GATC	5 cut(s)	4, 84, 146, 167, 292
DraI	TTTAAA	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	53, 80, 124
FaiI	YATR	1 cut(s)	378
FauI	CCCGC	2 cut(s)	16, 195
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	62, 221
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	427
GluI	GCNGC	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	59, 111
HapII	CCGG	2 cut(s)	70, 217
HpaII	CCGG	2 cut(s)	70, 217
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	172, 302
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	187, 241, 271
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 287, 422
HpyF3I	CTNAG	2 cut(s)	102, 299
HpySE526I	ACGT	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	4, 84, 146, 167, 292
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	40, 414
MaeI	CTAG	1 cut(s)	427
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	5 cut(s)	6, 86, 148, 169, 294
MboI	GATC	5 cut(s)	4, 84, 146, 167, 292
MflI	RGATCY	2 cut(s)	4, 167
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	115, 135, 381
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	3 cut(s)	40, 97, 100
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	353
MspI	CCGG	2 cut(s)	70, 217
MspR9I	CCNGG	3 cut(s)	55, 82, 126
MvaI	CCWGG	3 cut(s)	55, 82, 126
MwoI	GCNNNNNNNGC	3 cut(s)	203, 287, 422
NdeII	GATC	5 cut(s)	4, 84, 146, 167, 292
NlaIV	GGNNCC	3 cut(s)	6, 79, 424
NmeAIII	GCCGAG	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	53, 80, 124
PspGI	CCWGG	3 cut(s)	53, 80, 124
PspN4I	GGNNCC	3 cut(s)	6, 79, 424
PspPI	GGNCC	3 cut(s)	57, 67, 109
PsuI	RGATCY	2 cut(s)	4, 167
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	5 cut(s)	4, 84, 146, 167, 292
Sau96I	GGNCC	3 cut(s)	57, 67, 109
ScrFI	CCNGG	3 cut(s)	55, 82, 126
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	130, 162, 192, 264, 365
SfaNI	GCATC	2 cut(s)	40, 414
SinI	GGWCC	1 cut(s)	67
SmiI	ATTTAAAT	1 cut(s)	354
Sse9I	AATT	3 cut(s)	115, 135, 381
SsiI	CCGC	4 cut(s)	9, 202, 206, 347
SspMI	CTAG	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	53, 80, 124
SwaI	ATTTAAAT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	192
TasI	AATT	3 cut(s)	115, 135, 381
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.