Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29867258 .. 29868543

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAATTGCATGGATTGCCATTTTACCAATTGTTTTCCACCTTTTTCATGGGAATTAGTATATTTTCAACAGCCACAACACAGGTTTGGGCAACTGAGAAAATGGGGATATGGGATATCGTTTCTGGGGCATCCGATTCACTGAAACGGAACGCGCCGGATCAAACGCCCGTTACCAAGGTCGCCAAGAACGTCTTCTCCACCGCTTACGGTTTTGGCTCCGCCGCCGTTACCAAGGTCGACGGCGCCGTCAGGGATAAAATGATCCCCTACTTTCGAAACGAGCAAGTGTGGTCCAAGATCTCCCTATATGGCCCGATCCTCCTTAGAAACGGAGCCTCTGAGTTCTCTAAATTAATTCCAGGTGGAAATACATTTTATAACTTTGCTGCCGGATGCTTCTGTGACTATAACAATTCTAATAAACAAAAAGTGGATGTGAAAGAATTGCTGGCTAGAGTATCGAGACTAGAGAAAGAATTCGGTAAATTCCAGAAAAGGAAGACCAAGAAGGCTTGGTGGCAGGAAATTCTGAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.37

Weight (kDa)

9.64

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	155
AciI	CCGC	3 cut(s)	204, 222, 225
AclWI	GGATC	3 cut(s)	168, 259, 313
AcsI	RAATTY	3 cut(s)	479, 488, 528
AcyI	GRCGYC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	3 cut(s)	168, 259, 313
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	3 cut(s)	479, 488, 528
AseI	ATTAAT	1 cut(s)	356
Asp700I	GAANNNNTTC	2 cut(s)	194, 479
AspLEI	GCGC	2 cut(s)	157, 248
AspS9I	GGNCC	2 cut(s)	294, 314
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	187, 509
BbvI	GCAGC	1 cut(s)	376
BceAI	ACGGC	3 cut(s)	212, 233, 259
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	2 cut(s)	456, 470
BfoI	RGCGCY	1 cut(s)	249
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	2 cut(s)	225, 390
BlsI	GCNGC	2 cut(s)	226, 391
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	294, 314
BmiI	GGNNCC	3 cut(s)	220, 247, 337
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	140, 386
BpiI	GAAGAC	2 cut(s)	187, 509
Bpu14I	TTCGAA	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	177, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	177, 234
BseGI	GGATG	3 cut(s)	131, 401, 442
BseMII	CTCAG	2 cut(s)	87, 333
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	158, 393
BsmAI	GTCTC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	160, 264, 300, 318
BspACI	CCGC	3 cut(s)	204, 222, 225
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	88, 334
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	3 cut(s)	220, 247, 337
BspPI	GGATC	3 cut(s)	168, 259, 313
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	177, 234
BssMI	GATC	4 cut(s)	160, 264, 300, 318
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	177, 234
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	96, 326, 342
BstF5I	GGATG	3 cut(s)	131, 401, 442
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	157, 248
BstKTI	GATC	4 cut(s)	163, 267, 303, 321
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	160, 264, 300, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	2 cut(s)	187, 509
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	131, 401, 442
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	2 cut(s)	157, 248
Cfr13I	GGNCC	2 cut(s)	294, 314
CviAII	CATG	2 cut(s)	11, 49
CviJI	RGCY	6 cut(s)	74, 219, 315, 338, 455, 515
CviKI_1	RGCY	6 cut(s)	74, 219, 315, 338, 455, 515
DdeI	CTNAG	3 cut(s)	96, 326, 342
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	4 cut(s)	162, 266, 302, 320
DpnII	GATC	4 cut(s)	160, 264, 300, 318
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	177, 234
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	177, 234
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	177, 234
FaeI	CATG	2 cut(s)	14, 52
FaiI	YATR	8 cut(s)	12, 50, 62, 112, 310, 312, 381, 411
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	2 cut(s)	10, 48
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	225, 390
FokI	GGATG	3 cut(s)	118, 408, 449
Fsp4HI	GCNGC	2 cut(s)	225, 390
FspBI	CTAG	2 cut(s)	456, 470
GlaI	GCGC	2 cut(s)	156, 247
GluI	GCNGC	2 cut(s)	225, 390
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	2 cut(s)	158, 393
HhaI	GCGC	2 cut(s)	157, 248
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	14, 52
Hin6I	GCGC	2 cut(s)	155, 246
HinP1I	GCGC	2 cut(s)	155, 246
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	2 cut(s)	158, 393
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	136, 343, 534
Hpy188III	TCNNGA	2 cut(s)	465, 493
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	96, 326, 342
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	14, 52
HspAI	GCGC	2 cut(s)	155, 246
KasI	GGCGCC	1 cut(s)	245
Kzo9I	GATC	4 cut(s)	160, 264, 300, 318
LmnI	GCTCC	2 cut(s)	224, 335
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	140, 386
MaeI	CTAG	2 cut(s)	456, 470
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	172, 229, 404
MalI	GATC	4 cut(s)	162, 266, 302, 320
MboI	GATC	4 cut(s)	160, 264, 300, 318
MboII	GAAGA	2 cut(s)	187, 514
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	300
Mly113I	GGCGCC	1 cut(s)	246
MnlI	CCTC	2 cut(s)	332, 349
MroXI	GAANNNNTTC	2 cut(s)	194, 479
MseI	TTAA	1 cut(s)	356
MspI	CCGG	2 cut(s)	158, 393
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	16
NarI	GGCGCC	1 cut(s)	246
NdeII	GATC	4 cut(s)	160, 264, 300, 318
NlaIII	CATG	2 cut(s)	14, 52
NlaIV	GGNNCC	3 cut(s)	220, 247, 337
NmuCI	GTSAC	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 246
PdmI	GAANNNNTTC	2 cut(s)	194, 479
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	226, 391
PluTI	GGCGCC	1 cut(s)	249
PshBI	ATTAAT	1 cut(s)	356
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	220, 247, 337
PspPI	GGNCC	2 cut(s)	294, 314
PsuI	RGATCY	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	225, 390
Sau3AI	GATC	4 cut(s)	160, 264, 300, 318
Sau96I	GGNCC	2 cut(s)	294, 314
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	6 cut(s)	44, 87, 183, 195, 240, 367
SfaNI	GCATC	2 cut(s)	140, 386
SfoI	GGCGCC	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	294
SsiI	CCGC	3 cut(s)	204, 222, 225
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	456, 470
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	177, 234
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	240, 277, 464
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	2 cut(s)	163, 348
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	294
VspI	ATTAAT	1 cut(s)	356
XapI	RAATTY	3 cut(s)	479, 488, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	2 cut(s)	194, 479
XspI	CTAG	2 cut(s)	456, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.