Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005528

Physical Location & Seq

Genomic Coordinates Reverse (-)

29435210 .. 29435500

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGATATGGGGTATCGTTTATGGGGCATCCGATTCACTGAAACGGAACGCGTTGGATCAAACGCCCGTTACCAAGGTCGCCAAGAACGTCTTCTCCACCGCTTACGGTTTTGGCTCCGCCGCCGTTACCAAGGTCGACGGCGCCGTCAGGGATAAAATGATCCCCTACTTTCGAAACGAGCAAGTGTGGTCCAAGATCTCCCTATATGGCCCAATCCTCCTTAGAAACGGAGCCTCTGAGTTCTCTAAATTAATTCCAGGTAATTTACGTCCTAATCACACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.46

Weight (kDa)

9.91

Isoelectric Point (pI)

12.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20890
malus_domestica	MD03G1219600.v1.1 MD11G1237800.v1.1
prunus_persica	Prupe.4G189400_v2.0.a1 Prupe.4G189400_v2.0.a1 Prupe.4G189500_v2.0.a1
pyrus_communis	pycom03g16890 pycom11g20910 pycom11g20920
rosa_chinensis	RchiOBHm_Chr5g0035261 RchiOBHm_Chr5g0035271 RchiOBHm_Chr5g0035311
rosa_laevigata	RLG00000033614 RLG00000033616
rosa_multiflora	Rmu_sc0007948.1_g000004 Rmu_sc0008116.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045090 Rroxscaffold_1G00045100 Rroxscaffold_1G00045120
rosa_samantha	Rh5AG244000 Rh5AG244100 Rh5AG244200 Rh5BG243700 Rh5CG275200 Rh5CG275400 Rh5CG275500 Rh5DG252700
rosa_wichuraiana	Rw5G022290 Rw5G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	102, 120, 123
AclWI	GGATC	2 cut(s)	66, 157
AcyI	GRCGYC	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AlwI	GGATC	2 cut(s)	66, 157
AoxI	GGCC	1 cut(s)	211
AseI	ATTAAT	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	192, 212
AsuII	TTCGAA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	85
BceAI	ACGGC	3 cut(s)	110, 131, 157
BciT130I	CCWGG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 212
BmiI	GGNNCC	3 cut(s)	118, 145, 235
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	85
Bpu14I	TTCGAA	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	75, 132
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	75, 132
BseGI	GGATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	58, 162, 198
BspACI	CCGC	3 cut(s)	102, 120, 123
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	3 cut(s)	118, 145, 235
BspPI	GGATC	2 cut(s)	66, 157
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	75, 132
BssMI	GATC	3 cut(s)	58, 162, 198
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	75, 132
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	224, 240
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	3 cut(s)	61, 165, 201
BstMBI	GATC	3 cut(s)	58, 162, 198
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	38, 282
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	192, 212
CviJI	RGCY	3 cut(s)	117, 213, 236
CviKI_1	RGCY	3 cut(s)	117, 213, 236
DdeI	CTNAG	2 cut(s)	224, 240
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	3 cut(s)	60, 164, 200
DpnII	GATC	3 cut(s)	58, 162, 198
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	75, 132
Eco47I	GGWCC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	75, 132
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	75, 132
FaiI	YATR	4 cut(s)	10, 24, 208, 210
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	34, 241
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	2 cut(s)	90, 271
HpyF3I	CTNAG	2 cut(s)	224, 240
HpySE526I	ACGT	2 cut(s)	90, 271
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	58, 162, 198
LmnI	GCTCC	2 cut(s)	122, 233
LpnPI	CCDG	4 cut(s)	136, 246, 270, 273
LweI	GCATC	1 cut(s)	38
MaeII	ACGT	2 cut(s)	90, 271
MaeIII	GTNAC	2 cut(s)	70, 127
MalI	GATC	3 cut(s)	60, 164, 200
MboI	GATC	3 cut(s)	58, 162, 198
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	3 cut(s)	251, 255, 265
MluI	ACGCGT	1 cut(s)	51
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	230, 247
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	3 cut(s)	58, 162, 198
NlaIV	GGNNCC	3 cut(s)	118, 145, 235
NspV	TTCGAA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 144
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	118, 145, 235
PspPI	GGNCC	2 cut(s)	192, 212
PsuI	RGATCY	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	58, 162, 198
Sau96I	GGNCC	2 cut(s)	192, 212
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	5 cut(s)	81, 93, 138, 265, 274
SfaNI	GCATC	1 cut(s)	38
SfoI	GGCGCC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	3 cut(s)	251, 255, 265
SsiI	CCGC	3 cut(s)	102, 120, 123
SspDI	GGCGCC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	75, 132
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	2 cut(s)	93, 274
TaqI	TCGA	2 cut(s)	138, 175
TasI	AATT	3 cut(s)	251, 255, 265
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	45, 289
TspGWI	ACGGA	2 cut(s)	61, 246
TspRI	CASTG	2 cut(s)	45, 289
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.