Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

20367061 .. 20369975

Gene Structure 2915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27272.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGATGATGAAAATAAGACACTAGCCGATGTGCAAGAGAAAACTCCCGACACAAACCATCTTGCAACGAATGATTCAAGAACACAGATGGGAATTAATTCTCTACTATATTCCGAGCATGTCAACTCTGAAGAAGGGACACTAAGTAACGAAGTCAACAATGTCTCAGGTTACCTGGAAGCTATTAACCTTGCTGCAAGTTTGTCTGGTGAAAAGCTTAGTGGTGAAGTGACGGACAAAATTTCTCTTGTCAATAAAGAGAAGTCCGGTCCGGAACCAATAATTATACCTATAGTTCTGAAAATGGCTGAATTTGATCATAAGGCTTTGCTAGAGGAGGAGATCTCAACACGTACGTTCAGTGATAAGTGTCTAGTCCAGGATAAAGATAAACTAATATGCAACTTAAAGACCATCCAGGACTATCTTTGCTCATTCAATTCTCAGGTATGGATTGACGGTAGTCAATATTGGATTGGCTGCACGGATATTTTGAGTGTATCGAGCGTGGTATTTCATCTGTGTCGAACGAACATAGTAGGCCTGCGGAAAAGTAGATTGCATTCAGGATTTAGCTCAAGGCAGGTATTGAAGGAGATTAGAGGAAGGTGTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

207

Amino Acids

22.99

Weight (kDa)

5.42

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	240, 311
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	78, 439, 592
AjnI	CCWGG	3 cut(s)	174, 378, 417
AluBI	AGCT	3 cut(s)	182, 217, 576
AluI	AGCT	3 cut(s)	182, 217, 576
Alw26I	GTCTC	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	194, 480
ApoI	RAATTY	2 cut(s)	240, 311
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	221, 236
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	181, 467
BccI	CCATC	3 cut(s)	66, 82, 422
BciT130I	CCWGG	3 cut(s)	176, 380, 419
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	3 cut(s)	23, 332, 374
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	2 cut(s)	195, 481
BlsI	GCNGC	2 cut(s)	196, 482
Bme1390I	CCNGG	3 cut(s)	176, 380, 419
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	3 cut(s)	176, 380, 419
BoxI	GACNNNNGTC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpuEI	CTTGAG	1 cut(s)	562
BsaAI	YACGTR	1 cut(s)	353
BsaWI	WCCGGW	2 cut(s)	266, 271
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	3 cut(s)	176, 380, 419
BseGI	GGATG	2 cut(s)	10, 414
BseMII	CTCAG	2 cut(s)	180, 458
BseRI	GAGGAG	2 cut(s)	350, 353
BseXI	GCAGC	2 cut(s)	181, 467
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	543
BsiSI	CCGG	2 cut(s)	267, 272
BsiWI	CGTACG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	543
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	316, 342
BspACI	CCGC	1 cut(s)	547
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	179, 457
BspEI	TCCGGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	574
BssMI	GATC	2 cut(s)	316, 342
Bst2UI	CCWGG	3 cut(s)	176, 380, 419
Bst4CI	ACNGT	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	4 cut(s)	143, 166, 218, 444
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	10, 414
BstKTI	GATC	2 cut(s)	319, 345
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	316, 342
BstNI	CCWGG	3 cut(s)	176, 380, 419
BstNSI	RCATGY	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	462
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	174, 378, 417
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	181, 467
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	10, 414
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	269
CpoI	CGGWCCG	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	354
CspI	CGGWCCG	1 cut(s)	269
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	8 cut(s)	26, 182, 217, 308, 326, 480, 543, 576
CviKI_1	RGCY	8 cut(s)	26, 182, 217, 308, 326, 480, 543, 576
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	4 cut(s)	143, 166, 218, 444
DpnI	GATC	2 cut(s)	318, 344
DpnII	GATC	2 cut(s)	316, 342
Eco147I	AGGCCT	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	150
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	174, 378, 417
FaeI	CATG	1 cut(s)	122
FaiI	YATR	8 cut(s)	109, 120, 287, 293, 321, 400, 451, 536
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	195, 481
FokI	GGATG	2 cut(s)	17, 401
Fsp4HI	GCNGC	2 cut(s)	195, 481
FspBI	CTAG	3 cut(s)	23, 332, 374
GluI	GCNGC	2 cut(s)	195, 481
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	2 cut(s)	267, 272
Hin1II	CATG	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	124, 157
HindII	GTYRAC	2 cut(s)	124, 157
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	267, 272
HphI	GGTGA	2 cut(s)	221, 236
Hpy166II	GTNNAC	2 cut(s)	124, 157
Hpy188I	TCNGA	3 cut(s)	115, 130, 300
Hpy188III	TCNNGA	4 cut(s)	47, 78, 272, 567
Hpy8I	GTNNAC	2 cut(s)	124, 157
HpyAV	CCTTC	3 cut(s)	128, 586, 600
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	352, 356
HpyCH4V	TGCA	6 cut(s)	34, 65, 197, 402, 483, 562
HpyF3I	CTNAG	4 cut(s)	143, 166, 218, 444
HpySE526I	ACGT	2 cut(s)	352, 356
Hsp92II	CATG	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	316, 342
Lsp1109I	GCAGC	2 cut(s)	181, 467
MaeI	CTAG	3 cut(s)	23, 332, 374
MaeII	ACGT	2 cut(s)	352, 356
MaeIII	GTNAC	3 cut(s)	146, 170, 229
MalI	GATC	2 cut(s)	318, 344
MboI	GATC	2 cut(s)	316, 342
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	342
MluCI	AATT	6 cut(s)	93, 97, 240, 282, 311, 439
MnlI	CCTC	3 cut(s)	328, 331, 596
MroI	TCCGGA	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	3 cut(s)	96, 186, 407
MspI	CCGG	2 cut(s)	267, 272
MspR9I	CCNGG	3 cut(s)	176, 380, 419
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	3 cut(s)	176, 380, 419
NdeII	GATC	2 cut(s)	316, 342
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	543
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	74
Pfl23II	CGTACG	1 cut(s)	353
PfoI	TCCNGGA	2 cut(s)	378, 417
PkrI	GCNGC	2 cut(s)	196, 482
Ppu21I	YACGTR	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	462
PshBI	ATTAAT	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	174, 378, 417
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	3 cut(s)	174, 378, 417
PspLI	CGTACG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
Rsr2I	CGGWCCG	1 cut(s)	269
RsrII	CGGWCCG	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	96, 186, 407
SatI	GCNGC	2 cut(s)	195, 481
Sau3AI	GATC	2 cut(s)	316, 342
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	3 cut(s)	176, 380, 419
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	6 cut(s)	93, 97, 240, 282, 311, 439
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	1 cut(s)	547
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	3 cut(s)	23, 332, 374
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	3 cut(s)	174, 378, 417
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	2 cut(s)	355, 359
TaqI	TCGA	2 cut(s)	503, 526
TasI	AATT	6 cut(s)	93, 97, 240, 282, 311, 439
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	96, 186, 407
Tru9I	TTAA	3 cut(s)	96, 186, 407
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	194, 480
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	24, 506
TspGWI	ACGGA	2 cut(s)	248, 500
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	2 cut(s)	240, 311
XceI	RCATGY	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	3 cut(s)	23, 332, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.