Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

27774322 .. 27778742

Gene Structure 4421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGGTTTACAGACAGATAAAGAGACGATGAAGAAAGGCAAGGAAGTTGTGGTTTCAAGCCCTAACACCAACGACGATGACGACAACCTTAATATCAGCGAAGGAGACTTAGACGGCGACAATAATCATAACAGAGGAAGTGGCGTCTCTTTTACTTCCGTTAGATTCTCTTCTCGCAACACTTCCTCCAAATACGACTTTGTCAAGGTCAAGGTGTGGTTGGGCGATAATGCAGATCACTACTACGTGCTTTCCAGATTTTTGCTCAGCCGAATGTTAACTGTCACTAAGATCCCAAATTATGTAGCTATTAAAATTGCTTTGGAGCTCAAGAAGCTGCTAATAGACAACAGCCTTCTAGATGTCTCGCAGTCTGATTTGGAAGCCAATTTGTTTAAGCTTATGGAACGAAGGGGTTATGGGGAGGAGTACATAAACCGGTACAAGATGATGACGAGATTTCACCATCAAAGAGTGCCATTAGTTATTCTTGTATGTGGAACTGCCTGTGTTGGAAAGTCCACCATTGCTACCCAACTTGCACAAAGGCTAAATTTGCCTAATGTCTTGCAGACAGATATGGTATATGAATTGCTGCGCACATCAACAGATGCACCATTGACGTCTACTCCTGTATGGGCACGAGACTTCAGCTCCTCTGAGGAGTTAATTACTGAATTTTGTAGGGAGTGCAGGATTGTTCGTAAAGGATTGGCTGGTGATTTGAAGAAAGCTATGAAAGATGGAAAGCCAATAATAATAGAGGGAATACATTTGGATCCAAGCATTTATTTAATGGAAGATGAAAATAAAACACAAGCTCATGGGCAAGAGAAAATTCAAGAGGCAGAGTCCCTTGCAGCAGATGGTTCCAAAACACACATGGAAAACGATTCTCCAAGTATAAATGGAAATCCTTCTGAAGTTAGCAACAGTACTGCGCATGTCAGCTCTAATGAAGGGACACTGGTTAACAAGGTGAACGAAGTCTCAGATTGCCTGGAAGCTTTTGACCTAGCGGAAAGTGTTTCTGAGAATAAAGGTGGAAGTCTTACTGGTCCAGAGATGGATAAAAGTACTTCTGTTAAGAAAGAGAAGTCTGGTCCCGAACCAGTAATTATACCTCTAGTTTTGAAGATGGCTGAATTTGATCATAAGGCATTACTAGAGGAGGGGATCTCGACTCGTACATTTAGTGATAAATGTATAGTCCAGGATAAAGATAAGCTAATAAGAAACTTAAAGACCATCCAGGACTATCTATGCTCATTCAATTCGCAGGGTTTGACAGTTGTCAATATATCAGCAACCACATTCCCACAAACATTGGATTGGCTGCATGGATATCTTCTTGAGTGCATTGAACATGGCATTTCATCAGTATCCAACGAAAATAATAGGCGGCCTGTGGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

473

Amino Acids

52.59

Weight (kDa)

5.45

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	626
Acc16I	TGCGCA	2 cut(s)	599, 942
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	2 cut(s)	1019, 1402
AclWI	GGATC	4 cut(s)	286, 773, 786, 1184
AcsI	RAATTY	4 cut(s)	553, 677, 837, 1145
AcuI	CTGAAG	2 cut(s)	634, 942
AcyI	GRCGYC	2 cut(s)	144, 623
AfaI	GTAC	5 cut(s)	431, 443, 937, 1078, 1189
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	6 cut(s)	57, 727, 842, 1135, 1273, 1364
AjnI	CCWGG	3 cut(s)	999, 1212, 1251
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	6 cut(s)	17, 99, 151, 370, 639, 994
AlwI	GGATC	4 cut(s)	286, 773, 786, 1184
AoxI	GGCC	1 cut(s)	1403
ApeKI	GCWGC	4 cut(s)	337, 595, 860, 1336
ApoI	RAATTY	4 cut(s)	553, 677, 837, 1145
AsiGI	ACCGGT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	916
AspLEI	GCGC	2 cut(s)	600, 943
AspS9I	GGNCC	2 cut(s)	1058, 1103
AsuHPI	GGTGA	3 cut(s)	455, 731, 991
AvaII	GGWCC	2 cut(s)	1058, 1103
BaeGI	GKGCMC	1 cut(s)	643
BamHI	GGATCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	330
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	324, 582, 872, 1323
BccI	CCATC	6 cut(s)	474, 737, 860, 1060, 1132, 1256
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	3 cut(s)	1001, 1214, 1253
BciVI	GTATCC	1 cut(s)	1393
BclI	TGATCA	1 cut(s)	1150
BcoDI	GTCTC	6 cut(s)	17, 99, 151, 370, 639, 994
BfaI	CTAG	4 cut(s)	359, 1016, 1127, 1166
BfuI	GTATCC	1 cut(s)	1393
BisI	GCNGC	5 cut(s)	338, 596, 861, 1337, 1403
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	5 cut(s)	339, 597, 862, 1338, 1404
BmcAI	AGTACT	2 cut(s)	937, 1078
Bme1390I	CCNGG	3 cut(s)	1001, 1214, 1253
Bme18I	GGWCC	2 cut(s)	1058, 1103
BmgT120I	GGNCC	2 cut(s)	1058, 1103
BmiI	GGNNCC	3 cut(s)	780, 871, 1105
BmrFI	CCNGG	3 cut(s)	1001, 1214, 1253
BmsI	GCATC	1 cut(s)	601
BoxI	GACNNNNGTC	1 cut(s)	1292
BplI	GAGNNNNNCTC	2 cut(s)	1163, 1195
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	314, 1373
BsaAI	YACGTR	1 cut(s)	247
BsaHI	GRCGYC	2 cut(s)	144, 623
BsaWI	WCCGGW	1 cut(s)	438
BsaXI	ACNNNNNCTCC	6 cut(s)	170, 200, 613, 638, 643, 668
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	3 cut(s)	972, 1060, 1112
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	3 cut(s)	1001, 1214, 1253
BseGI	GGATG	1 cut(s)	1248
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	4 cut(s)	280, 651, 1005, 1023
BseNI	ACTGG	3 cut(s)	972, 1060, 1112
BseRI	GAGGAG	4 cut(s)	440, 646, 677, 1184
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	4 cut(s)	324, 582, 872, 1323
BsgI	GTGCAG	1 cut(s)	712
BshFI	GGCC	1 cut(s)	1405
BshTI	ACCGGT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	3 cut(s)	838, 976, 1089
BsmAI	GTCTC	6 cut(s)	17, 99, 151, 370, 639, 994
BsmBI	CGTCTC	2 cut(s)	17, 151
BsmFI	GGGAC	3 cut(s)	838, 976, 1089
BsnI	GGCC	1 cut(s)	1405
Bsp1286I	GDGCHC	2 cut(s)	330, 643
Bsp143I	GATC	5 cut(s)	235, 291, 778, 1150, 1176
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	2 cut(s)	1019, 1402
BspANI	GGCC	1 cut(s)	1405
BspCNI	CTCAG	4 cut(s)	279, 652, 1004, 1024
BspLI	GGNNCC	3 cut(s)	780, 871, 1105
BspPI	GGATC	4 cut(s)	286, 773, 786, 1184
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	972, 1060, 1112
BssAI	RCCGGY	1 cut(s)	438
BssMI	GATC	5 cut(s)	235, 291, 778, 1150, 1176
BssNI	GRCGYC	2 cut(s)	144, 623
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	1001, 1214, 1253
Bst4CI	ACNGT	3 cut(s)	283, 935, 1291
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	2 cut(s)	144, 623
BstBAI	YACGTR	1 cut(s)	247
BstDEI	CTNAG	6 cut(s)	109, 266, 288, 660, 991, 1032
BstF5I	GGATG	1 cut(s)	1248
BstHHI	GCGC	2 cut(s)	600, 943
BstKTI	GATC	5 cut(s)	238, 294, 781, 1153, 1179
BstMAI	GTCTC	6 cut(s)	17, 99, 151, 370, 639, 994
BstMBI	GATC	5 cut(s)	235, 291, 778, 1150, 1176
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 556
BstNI	CCWGG	3 cut(s)	1001, 1214, 1253
BstNSI	RCATGY	1 cut(s)	947
BstPAI	GACNNNNGTC	1 cut(s)	1292
BstSCI	CCNGG	3 cut(s)	999, 1212, 1251
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	4 cut(s)	324, 582, 872, 1323
BstX2I	RGATCY	3 cut(s)	291, 778, 1176
BstYI	RGATCY	3 cut(s)	291, 778, 1176
BsuI	GTATCC	1 cut(s)	1393
BsuRI	GGCC	1 cut(s)	1405
BtsCI	GGATG	1 cut(s)	1248
BtsIMutI	CAGTG	1 cut(s)	965
CfoI	GCGC	2 cut(s)	600, 943
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	1058, 1103
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	430, 442, 936, 1077, 1188
CspAI	ACCGGT	1 cut(s)	438
CspCI	CAANNNNNGTGG	2 cut(s)	1308, 1343
CviAII	CATG	5 cut(s)	824, 883, 944, 1340, 1367
CviQI	GTAC	5 cut(s)	430, 442, 936, 1077, 1188
DdeI	CTNAG	6 cut(s)	109, 266, 288, 660, 991, 1032
DpnI	GATC	5 cut(s)	237, 293, 780, 1152, 1178
DpnII	GATC	5 cut(s)	235, 291, 778, 1150, 1176
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	1346
Eco47I	GGWCC	2 cut(s)	1058, 1103
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	634, 942
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	3 cut(s)	999, 1212, 1251
EcoRV	GATATC	1 cut(s)	1346
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	2 cut(s)	17, 151
FaeI	CATG	5 cut(s)	827, 886, 947, 1343, 1370
FaqI	GGGAC	3 cut(s)	838, 976, 1089
FatI	CATG	5 cut(s)	823, 882, 943, 1339, 1366
FbaI	TGATCA	1 cut(s)	1150
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	5 cut(s)	338, 596, 861, 1337, 1403
FokI	GGATG	1 cut(s)	1235
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	5 cut(s)	338, 596, 861, 1337, 1403
FspBI	CTAG	4 cut(s)	359, 1016, 1127, 1166
FspI	TGCGCA	2 cut(s)	599, 942
GlaI	GCGC	2 cut(s)	599, 942
GluI	GCNGC	5 cut(s)	338, 596, 861, 1337, 1403
HaeIII	GGCC	1 cut(s)	1405
HapII	CCGG	1 cut(s)	439
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	600, 943
Hin1I	GRCGYC	2 cut(s)	144, 623
Hin1II	CATG	5 cut(s)	827, 886, 947, 1343, 1370
Hin6I	GCGC	2 cut(s)	598, 941
HinP1I	GCGC	2 cut(s)	598, 941
HincII	GTYRAC	2 cut(s)	279, 973
HindII	GTYRAC	2 cut(s)	279, 973
HindIII	AAGCTT	2 cut(s)	398, 1005
HinfI	GANTC	4 cut(s)	165, 851, 893, 1183
HpaI	GTTAAC	2 cut(s)	279, 973
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	3 cut(s)	455, 731, 991
Hpy166II	GTNNAC	6 cut(s)	8, 279, 522, 627, 973, 982
Hpy188I	TCNGA	5 cut(s)	376, 661, 922, 994, 1033
Hpy188III	TCNNGA	8 cut(s)	255, 331, 359, 842, 1061, 1106, 1180, 1352
Hpy8I	GTNNAC	6 cut(s)	8, 279, 522, 627, 973, 982
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	5 cut(s)	95, 365, 405, 927, 953
HpyCH4III	ACNGT	3 cut(s)	283, 935, 1291
HpyCH4IV	ACGT	2 cut(s)	246, 623
HpyCH4V	TGCA	8 cut(s)	233, 542, 571, 614, 693, 860, 1339, 1359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 556
HpyF3I	CTNAG	6 cut(s)	109, 266, 288, 660, 991, 1032
HpySE526I	ACGT	2 cut(s)	246, 623
Hsp92I	GRCGYC	2 cut(s)	144, 623
Hsp92II	CATG	5 cut(s)	827, 886, 947, 1343, 1370
HspAI	GCGC	2 cut(s)	598, 941
Ksp22I	TGATCA	1 cut(s)	1150
KspAI	GTTAAC	2 cut(s)	279, 973
Kzo9I	GATC	5 cut(s)	235, 291, 778, 1150, 1176
LmnI	GCTCC	2 cut(s)	325, 659
Lsp1109I	GCAGC	4 cut(s)	324, 582, 872, 1323
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	4 cut(s)	359, 1016, 1127, 1166
MaeII	ACGT	2 cut(s)	246, 623
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	5 cut(s)	237, 293, 780, 1152, 1178
MboI	GATC	5 cut(s)	235, 291, 778, 1150, 1176
MboII	GAAGA	6 cut(s)	43, 162, 739, 812, 1147, 1340
MflI	RGATCY	3 cut(s)	291, 778, 1176
MhlI	GDGCHC	2 cut(s)	330, 643
MlyI	GAGTC	2 cut(s)	860, 1177
MmeI	TCCRAC	2 cut(s)	493, 1410
MroXI	GAANNNNTTC	1 cut(s)	916
MseI	TTAA	9 cut(s)	90, 278, 312, 396, 668, 794, 972, 1086, 1241
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	3 cut(s)	1001, 1214, 1253
MvaI	CCWGG	3 cut(s)	1001, 1214, 1253
MwoI	GCNNNNNNNGC	2 cut(s)	334, 556
NdeII	GATC	5 cut(s)	235, 291, 778, 1150, 1176
NlaIII	CATG	5 cut(s)	827, 886, 947, 1343, 1370
NlaIV	GGNNCC	3 cut(s)	780, 871, 1105
NmuCI	GTSAC	1 cut(s)	283
NsbI	TGCGCA	2 cut(s)	599, 942
NspI	RCATGY	1 cut(s)	947
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	916
PfeI	GAWTC	2 cut(s)	165, 893
PflFI	GACNNNGTC	1 cut(s)	200
PfoI	TCCNGGA	2 cut(s)	1212, 1251
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	5 cut(s)	339, 597, 862, 1338, 1404
PleI	GAGTC	2 cut(s)	859, 1177
PpsI	GAGTC	2 cut(s)	859, 1177
Ppu21I	YACGTR	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	1292
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	3 cut(s)	999, 1212, 1251
PspGI	CCWGG	3 cut(s)	999, 1212, 1251
PspN4I	GGNNCC	3 cut(s)	780, 871, 1105
PspPI	GGNCC	2 cut(s)	1058, 1103
PsuI	RGATCY	3 cut(s)	291, 778, 1176
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	5 cut(s)	431, 443, 937, 1078, 1189
RsaNI	GTAC	5 cut(s)	430, 442, 936, 1077, 1188
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	9 cut(s)	90, 278, 312, 396, 668, 794, 972, 1086, 1241
SatI	GCNGC	5 cut(s)	338, 596, 861, 1337, 1403
Sau3AI	GATC	5 cut(s)	235, 291, 778, 1150, 1176
Sau96I	GGNCC	2 cut(s)	1058, 1103
ScaI	AGTACT	2 cut(s)	937, 1078
SchI	GAGTC	2 cut(s)	860, 1177
ScrFI	CCNGG	3 cut(s)	1001, 1214, 1253
SduI	GDGCHC	2 cut(s)	330, 643
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	2 cut(s)	1058, 1103
SmlI	CTYRAG	2 cut(s)	329, 1352
SmoI	CTYRAG	2 cut(s)	329, 1352
SsiI	CCGC	2 cut(s)	1019, 1402
SspMI	CTAG	4 cut(s)	359, 1016, 1127, 1166
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	999, 1212, 1251
TaaI	ACNGT	3 cut(s)	283, 935, 1291
TaiI	ACGT	2 cut(s)	249, 626
TaqI	TCGA	1 cut(s)	1181
TatI	WGTACW	3 cut(s)	429, 935, 1076
TauI	GCSGC	1 cut(s)	1405
TfiI	GAWTC	2 cut(s)	165, 893
Tru1I	TTAA	9 cut(s)	90, 278, 312, 396, 668, 794, 972, 1086, 1241
Tru9I	TTAA	9 cut(s)	90, 278, 312, 396, 668, 794, 972, 1086, 1241
TscAI	CASTG	1 cut(s)	972
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	4 cut(s)	337, 595, 860, 1336
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	6 cut(s)	44, 603, 752, 819, 972, 1365
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	972
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	1058, 1103
XapI	RAATTY	4 cut(s)	553, 677, 837, 1145
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	916
XspI	CTAG	4 cut(s)	359, 1016, 1127, 1166
ZraI	GACGTC	1 cut(s)	624
ZrmI	AGTACT	2 cut(s)	937, 1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.