Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Reverse (-)

5675961 .. 5678576

Gene Structure 2616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026758

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAAGCCGAGATGACTGATGATGATGATGATAAATTCACTCCGTACGTGCAGTTTGAGCTAGAGGGAATTGCAGGACAGGGTATGATCTTATTATTATGGGTGAAGGTGTGGCTGGGTGATCATGCCGAGCACTACTACGTGTTTTCCAGGTTTTTACTCAGCCAAAATTTAACTGTCACCAAGATTCCAAATCATATATCTATCAAAATCGCTCTTGATCTCAAGAAGCTACTCGTAGACAACAGCCTTCTAGATGTCTCTCAGTCGGATTTGGAAGAGAATCTGTTTAAGATTATGGAGCAAAGGGATTTTGGGGAAGATTACGTAAAGCGTTACCGGATGATGACCAGATTTCACCATCAAAGAGTGCCATTAGTTATTATTGTGTGTGGAACTTCCTGTGTTGGAAAGTCCACTATTGCTGCCCAAATTTCACAAAGGTTCAATTTGCCTAATGTCATGCAGACAGATGTGGTGTACGAATTGCTGCGCACGTCGACAGATGCACCACTGGCCTCCACTCCGATATGGGCACGAGACTTCAGCTCCTCTGAAGAGTTGATTACTGAATTTTGTAGAGAATGCCGGGTTGTTCGAAAAGGTTTGGCTGGTGATTTGAAGAAAGCACTGAAAGATGGAAAGCCAATAATAATAGAGGGGATGCATTTGGATCCAAACATTTTTTTAATGTATGAAGAAAAGAGCCACTCACCGGATCTGAACTCTAGTACCGATCAGCATGTGAGCTCAGAAAAAGGGAAGGCACCGGCAAGTGTTTCTGAAAAGAAAGGTGAAAATGTTCAGGGTCCTGACCCAATAATTATACCTCTGATTTTGAATATGGCTGAATTTGAGCACCAGGCATTGCTAGAGGAGTGGTTCTCTTCTTGCACATGTAGTGATAAATGGCAAGTCCAGGATAGAGATAAGCTGATAAGCAATGTGAAGATGATTCAGGACTATCTTCACTCATTTGATTCAAAGGGACTGACAGTTCTCAACCTATCAGCAGCCACATTCGCTCAAACACTAGATTGGCTGCACGGATATATTCTTGAGCGTATTGAGCAAGGCACGCAATCAGCATCCAACGAAAATGGCTGGTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

372

Amino Acids

42.25

Weight (kDa)

5.21

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	766
AccI	GTMKAC	2 cut(s)	240, 500
AclWI	GGATC	3 cut(s)	668, 681, 726
AcsI	RAATTY	5 cut(s)	35, 169, 432, 572, 851
AcuI	CTGAAG	2 cut(s)	529, 576
AfaI	GTAC	3 cut(s)	47, 482, 733
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflIII	ACRYGT	2 cut(s)	141, 896
AgsI	TTSAA	4 cut(s)	448, 622, 841, 984
AjiI	CACGTC	1 cut(s)	498
AjnI	CCWGG	3 cut(s)	149, 861, 918
AloI	GAACNNNNNNTCC	2 cut(s)	981, 1013
AluBI	AGCT	5 cut(s)	61, 232, 549, 750, 934
AluI	AGCT	5 cut(s)	61, 232, 549, 750, 934
Alw21I	GWGCWC	3 cut(s)	135, 752, 861
Alw26I	GTCTC	2 cut(s)	265, 534
AlwI	GGATC	3 cut(s)	668, 681, 726
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	4 cut(s)	425, 490, 1013, 1042
ApoI	RAATTY	5 cut(s)	35, 169, 432, 572, 851
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	7 cut(s)	115, 131, 172, 350, 626, 705, 806
AsuII	TTCGAA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	538
BaeI	ACNNNNGTAYC	2 cut(s)	715, 748
BamHI	GGATCC	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	752
BauI	CACGAG	1 cut(s)	537
Bbv12I	GWGCWC	3 cut(s)	135, 752, 861
BbvI	GCAGC	4 cut(s)	412, 477, 1025, 1029
BccI	CCATC	2 cut(s)	369, 632
BciT130I	CCWGG	3 cut(s)	151, 863, 920
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	265, 534
BfaI	CTAG	5 cut(s)	62, 254, 729, 872, 1034
BisI	GCNGC	4 cut(s)	426, 491, 1014, 1043
BlsI	GCNGC	4 cut(s)	427, 492, 1015, 1044
Bme1390I	CCNGG	4 cut(s)	151, 590, 863, 920
Bme18I	GGWCC	1 cut(s)	809
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	3 cut(s)	675, 768, 810
BmrFI	CCNGG	4 cut(s)	151, 590, 863, 920
BmsI	GCATC	3 cut(s)	496, 654, 1097
BplI	GAGNNNNNCTC	2 cut(s)	869, 901
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	2 cut(s)	209, 1079
BpuMI	CCSGG	1 cut(s)	590
BsaAI	YACGTR	3 cut(s)	49, 142, 328
BsaWI	WCCGGW	2 cut(s)	339, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	2 cut(s)	866, 949
BseBI	CCWGG	3 cut(s)	151, 863, 920
BseGI	GGATG	3 cut(s)	348, 669, 1088
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMI	GCAATG	2 cut(s)	866, 949
BseMII	CTCAG	3 cut(s)	175, 278, 765
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	2 cut(s)	541, 890
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	4 cut(s)	412, 477, 1025, 1029
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	2 cut(s)	71, 1028
BshFI	GGCC	1 cut(s)	518
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	3 cut(s)	135, 752, 861
BsiSI	CCGG	4 cut(s)	340, 589, 716, 770
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	2 cut(s)	265, 534
BsmFI	GGGAC	1 cut(s)	1002
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	518
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	4 cut(s)	135, 538, 752, 861
Bsp143I	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	3 cut(s)	174, 277, 764
BspLI	GGNNCC	3 cut(s)	675, 768, 810
BspPI	GGATC	3 cut(s)	668, 681, 726
BspT104I	TTCGAA	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	766
BsrDI	GCAATG	2 cut(s)	866, 949
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	1 cut(s)	769
BssMI	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	151, 863, 920
Bst4CI	ACNGT	2 cut(s)	178, 997
Bst6I	CTCTTC	3 cut(s)	273, 552, 892
BstBAI	YACGTR	3 cut(s)	49, 142, 328
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	1079
BstDEI	CTNAG	3 cut(s)	161, 264, 751
BstF5I	GGATG	3 cut(s)	348, 669, 1088
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	6 cut(s)	90, 124, 223, 676, 721, 739
BstMAI	GTCTC	2 cut(s)	265, 534
BstMBI	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 515, 1022, 1069, 1078
BstNI	CCWGG	3 cut(s)	151, 863, 920
BstNSI	RCATGY	2 cut(s)	746, 900
BstSCI	CCNGG	4 cut(s)	149, 588, 861, 918
BstSLI	GKGCMC	1 cut(s)	538
BstSNI	TACGTA	1 cut(s)	328
BstV1I	GCAGC	4 cut(s)	412, 477, 1025, 1029
BstX2I	RGATCY	2 cut(s)	673, 718
BstYI	RGATCY	2 cut(s)	673, 718
BsuRI	GGCC	1 cut(s)	518
BtrI	CACGTC	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	348, 669, 1088
BtsIMutI	CAGTG	2 cut(s)	512, 629
Cac8I	GCNNGC	1 cut(s)	1079
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	809
Csp6I	GTAC	3 cut(s)	46, 481, 732
CviAII	CATG	4 cut(s)	125, 463, 743, 897
CviQI	GTAC	3 cut(s)	46, 481, 732
DdeI	CTNAG	3 cut(s)	161, 264, 751
DpnI	GATC	6 cut(s)	89, 123, 222, 675, 720, 738
DpnII	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
Eam1104I	CTCTTC	3 cut(s)	273, 552, 892
EarI	CTCTTC	3 cut(s)	273, 552, 892
Ecl136II	GAGCTC	1 cut(s)	750
Eco105I	TACGTA	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	2 cut(s)	529, 576
EcoICRI	GAGCTC	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	809
EcoRII	CCWGG	3 cut(s)	149, 861, 918
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	752
FaeI	CATG	4 cut(s)	128, 466, 746, 900
FaqI	GGGAC	1 cut(s)	1002
FatI	CATG	4 cut(s)	124, 462, 742, 896
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	2 cut(s)	240, 500
Fnu4HI	GCNGC	4 cut(s)	426, 491, 1014, 1043
FokI	GGATG	3 cut(s)	355, 676, 1075
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	4 cut(s)	426, 491, 1014, 1043
FspBI	CTAG	5 cut(s)	62, 254, 729, 872, 1034
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	4 cut(s)	426, 491, 1014, 1043
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	4 cut(s)	340, 589, 716, 770
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	4 cut(s)	128, 466, 746, 900
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	4 cut(s)	187, 283, 955, 980
HpaII	CCGG	4 cut(s)	340, 589, 716, 770
HphI	GGTGA	7 cut(s)	115, 131, 172, 350, 626, 705, 806
Hpy166II	GTNNAC	4 cut(s)	241, 417, 481, 501
Hpy188I	TCNGA	7 cut(s)	271, 528, 556, 723, 754, 784, 834
Hpy188III	TCNNGA	6 cut(s)	218, 226, 254, 812, 959, 1058
Hpy8I	GTNNAC	4 cut(s)	241, 417, 481, 501
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	3 cut(s)	100, 260, 757
HpyCH4III	ACNGT	2 cut(s)	178, 997
HpyCH4IV	ACGT	4 cut(s)	48, 141, 327, 497
HpyCH4V	TGCA	7 cut(s)	52, 74, 466, 509, 667, 894, 1045
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 515, 1022, 1069, 1078
HpyF3I	CTNAG	3 cut(s)	161, 264, 751
HpySE526I	ACGT	4 cut(s)	48, 141, 327, 497
Hsp92II	CATG	4 cut(s)	128, 466, 746, 900
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
LmnI	GCTCC	2 cut(s)	301, 554
Lsp1109I	GCAGC	4 cut(s)	412, 477, 1025, 1029
LweI	GCATC	3 cut(s)	496, 654, 1097
MaeI	CTAG	5 cut(s)	62, 254, 729, 872, 1034
MaeII	ACGT	4 cut(s)	48, 141, 327, 497
MaeIII	GTNAC	2 cut(s)	178, 335
MalI	GATC	6 cut(s)	89, 123, 222, 675, 720, 738
MboI	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
MboII	GAAGA	8 cut(s)	290, 332, 569, 634, 710, 879, 959, 961
MflI	RGATCY	2 cut(s)	673, 718
MhlI	GDGCHC	4 cut(s)	135, 538, 752, 861
MluCI	AATT	9 cut(s)	35, 69, 169, 432, 448, 485, 572, 822, 851
MmeI	TCCRAC	3 cut(s)	249, 388, 1116
MnlI	CCTC	6 cut(s)	58, 529, 562, 652, 840, 868
Mph1103I	ATGCAT	1 cut(s)	669
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	3 cut(s)	173, 291, 689
MspI	CCGG	4 cut(s)	340, 589, 716, 770
MspR9I	CCNGG	4 cut(s)	151, 590, 863, 920
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	3 cut(s)	151, 863, 920
MwoI	GCNNNNNNNGC	5 cut(s)	58, 515, 1022, 1069, 1078
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
NlaIII	CATG	4 cut(s)	128, 466, 746, 900
NlaIV	GGNNCC	3 cut(s)	675, 768, 810
NmeAIII	GCCGAG	2 cut(s)	34, 154
NmuCI	GTSAC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	2 cut(s)	746, 900
NspV	TTCGAA	1 cut(s)	598
PciI	ACATGT	1 cut(s)	896
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	4 cut(s)	187, 283, 955, 980
Pfl23II	CGTACG	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	918
PkrI	GCNGC	4 cut(s)	427, 492, 1015, 1044
Ppu21I	YACGTR	3 cut(s)	49, 142, 328
PpuMI	RGGWCCY	1 cut(s)	809
PscI	ACATGT	1 cut(s)	896
Psp124BI	GAGCTC	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	3 cut(s)	149, 861, 918
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	3 cut(s)	149, 861, 918
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	675, 768, 810
PspPI	GGNCC	1 cut(s)	809
PspPPI	RGGWCCY	1 cut(s)	809
PsuI	RGATCY	2 cut(s)	673, 718
RsaI	GTAC	3 cut(s)	47, 482, 733
RsaNI	GTAC	3 cut(s)	46, 481, 732
SacI	GAGCTC	1 cut(s)	752
SalI	GTCGAC	1 cut(s)	499
SaqAI	TTAA	3 cut(s)	173, 291, 689
SatI	GCNGC	4 cut(s)	426, 491, 1014, 1043
Sau3AI	GATC	6 cut(s)	87, 121, 220, 673, 718, 736
Sau96I	GGNCC	1 cut(s)	809
ScrFI	CCNGG	4 cut(s)	151, 590, 863, 920
SduI	GDGCHC	4 cut(s)	135, 538, 752, 861
SfaNI	GCATC	3 cut(s)	496, 654, 1097
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	1 cut(s)	809
SmlI	CTYRAG	2 cut(s)	224, 1058
SmoI	CTYRAG	2 cut(s)	224, 1058
SnaBI	TACGTA	1 cut(s)	328
Sse9I	AATT	9 cut(s)	35, 69, 169, 432, 448, 485, 572, 822, 851
SspMI	CTAG	5 cut(s)	62, 254, 729, 872, 1034
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	4 cut(s)	149, 588, 861, 918
TaaI	ACNGT	2 cut(s)	178, 997
TaiI	ACGT	4 cut(s)	51, 144, 330, 500
TaqI	TCGA	2 cut(s)	500, 598
TasI	AATT	9 cut(s)	35, 69, 169, 432, 448, 485, 572, 822, 851
TfiI	GAWTC	4 cut(s)	187, 283, 955, 980
Tru1I	TTAA	3 cut(s)	173, 291, 689
Tru9I	TTAA	3 cut(s)	173, 291, 689
TscAI	CASTG	2 cut(s)	519, 636
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	425, 490, 1013, 1042
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 711
TspGWI	ACGGA	2 cut(s)	33, 1062
TspRI	CASTG	2 cut(s)	519, 636
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	5 cut(s)	35, 169, 432, 572, 851
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	2 cut(s)	746, 900
XmiI	GTMKAC	2 cut(s)	240, 500
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	5 cut(s)	62, 254, 729, 872, 1034
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.