Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

19545800 .. 19547549

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28373.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATGATGAAAATAAGACACTAGCCGATGTGCAAGAGAAAACTCCCGACACAAACCATCTTGCAGCGAATGATTCAAAAACACAGATGGGAATTAATTCTCTACTATATACCGAGCATGTCAACTCTGAAGAAGGGACACTAAGTAACGAAGTCAACACTTTCTCAGGTTACCTGGAAGCTATTTACCTTGCTGCAAGTGAAAAGCTTAGTGGTGAAGAGACAGACAAAAATTTTCTTGTCAATAAAGAGAAGTCCGGTCCGGAACCAATAATTATACCTATAGTTCTGAAAATGGCTGAATTTGATCATAAGGATAAAGATAAAACTAATAAGCAACTTAAAGACCATCCAGGACTATCTTTGCTCATTCAATTCTCAGTCAATAATATATCAGCAACAACATTCCCACAAACATTGGATTGGCTGCACGGATATCTTCTTGAGTGTATCGAGCATGGTATTTCATCTGTGTCGAACGAACATAGTAGGCCTGCGGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

169

Amino Acids

18.74

Weight (kDa)

4.84

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	232, 302
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	78, 374
AjnI	CCWGG	2 cut(s)	174, 352
AluBI	AGCT	2 cut(s)	182, 208
AluI	AGCT	2 cut(s)	182, 208
Alw26I	GTCTC	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	3 cut(s)	65, 194, 427
ApoI	RAATTY	2 cut(s)	232, 302
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	77, 181, 414
BccI	CCATC	3 cut(s)	66, 82, 357
BciT130I	CCWGG	2 cut(s)	176, 354
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	66, 195, 428
BlsI	GCNGC	3 cut(s)	67, 196, 429
Bme1390I	CCNGG	2 cut(s)	176, 354
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	176, 354
BpuEI	CTTGAG	1 cut(s)	464
BsaWI	WCCGGW	2 cut(s)	257, 262
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	176, 354
BseGI	GGATG	2 cut(s)	10, 349
BseMII	CTCAG	2 cut(s)	180, 393
BseXI	GCAGC	3 cut(s)	77, 181, 414
BsgI	GTGCAG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	258, 263
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	493
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	179, 392
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	267
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	176, 354
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	143, 166, 209, 379
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	10, 349
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	307
BstNI	CCWGG	2 cut(s)	176, 354
BstNSI	RCATGY	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	174, 352
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	77, 181, 414
BsuRI	GGCC	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	10, 349
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	260
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CspI	CGGWCCG	1 cut(s)	260
CviAII	CATG	2 cut(s)	119, 458
CviJI	RGCY	6 cut(s)	26, 182, 208, 299, 427, 493
CviKI_1	RGCY	6 cut(s)	26, 182, 208, 299, 427, 493
DdeI	CTNAG	4 cut(s)	143, 166, 209, 379
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	150
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	174, 352
EcoRV	GATATC	1 cut(s)	437
FaeI	CATG	2 cut(s)	122, 461
FaiI	YATR	9 cut(s)	109, 111, 120, 278, 284, 312, 392, 459, 486
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	118, 457
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	66, 195, 428
FokI	GGATG	2 cut(s)	17, 336
Fsp4HI	GCNGC	3 cut(s)	66, 195, 428
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	66, 195, 428
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	2 cut(s)	258, 263
Hin1II	CATG	2 cut(s)	122, 461
HincII	GTYRAC	2 cut(s)	124, 157
HindII	GTYRAC	2 cut(s)	124, 157
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	258, 263
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	124, 157
Hpy188I	TCNGA	2 cut(s)	130, 291
Hpy188III	TCNNGA	3 cut(s)	47, 263, 443
Hpy8I	GTNNAC	2 cut(s)	124, 157
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	4 cut(s)	34, 65, 197, 430
HpyF3I	CTNAG	4 cut(s)	143, 166, 209, 379
Hsp92II	CATG	2 cut(s)	122, 461
Kpn2I	TCCGGA	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	153, 161, 188, 271, 276, 339, 366
Lsp1109I	GCAGC	3 cut(s)	77, 181, 414
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	146, 170
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	143, 230, 431
MluCI	AATT	6 cut(s)	93, 97, 232, 273, 302, 374
MroI	TCCGGA	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	96, 342
MspI	CCGG	2 cut(s)	258, 263
MspR9I	CCNGG	2 cut(s)	176, 354
MvaI	CCWGG	2 cut(s)	176, 354
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	122, 461
NlaIV	GGNNCC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	67, 196, 429
PshBI	ATTAAT	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	174, 352
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	174, 352
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	260
Rsr2I	CGGWCCG	1 cut(s)	260
RsrII	CGGWCCG	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	96, 342
SatI	GCNGC	3 cut(s)	66, 195, 428
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	176, 354
SetI	ASST	6 cut(s)	172, 177, 184, 192, 210, 283
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	93, 97, 232, 273, 302, 374
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	174, 352
TaqI	TCGA	2 cut(s)	453, 476
TasI	AATT	6 cut(s)	93, 97, 232, 273, 302, 374
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	96, 342
Tru9I	TTAA	2 cut(s)	96, 342
TseI	GCWGC	3 cut(s)	65, 194, 427
TspDTI	ATGAA	2 cut(s)	24, 456
TspGWI	ACGGA	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	2 cut(s)	232, 302
XceI	RCATGY	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.