Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

23827923 .. 23829249

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCAGACAGATGTGGTATACGAATTGCTGCGCACATCAACGGATGCACCGTTGGCATCTACTCCTGTATGGGCGCGAGACTTCAGCTCCGCGGAGGAGTTAATTACCGAGTTTTGTAGGGAATGCAGGATTGTTCGTAAAGGATTGGCGGGTGATTTGAAGAAGGCAGTGAAAGATGGGAAGCCAATAATAATAGAAGGAATGCATATTGATCCGAACATCTATCTGATGGCGGATGAAAATAAAACACCAGACGAATCCAGAACACACTTGGAAAATGTGCATGTCAGCTCAGAAGAAGGGACACTAACAGCTAACAACGCAAACAAAGTAGATTACCTGGAAGCTATTGGCCTAGCAGGAAGTTTCATTGAGATTAATAACGAAGGTGAAAGTGGTTCGGAGGAGGCTAAAATTACTTCTGTTTCAAAAGAGAAGTGTGGTCCTGGACCGATTATTATACCTCTAGTTCTGAAGATGGCTGAATTCGATCACAATGCGTTACTAGAGGAATGGTTCTCAACTTTTGCATTCAATGATAAACTAGTCCAGGACAAAAATAAGCTAGCAAGCAACTTAAAGACCATTCAGGACTATCTTTGTTCATTCAACTCCAAGGTAAGCGCGTTTCTTGTGAATCACGGTTCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

218

Amino Acids

24.03

Weight (kDa)

4.88

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	3 cut(s)	76, 92, 626
AciI	CCGC	4 cut(s)	90, 92, 149, 233
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	2 cut(s)	67, 494
AgsI	TTSAA	4 cut(s)	160, 429, 535, 610
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	3 cut(s)	339, 445, 549
AluBI	AGCT	5 cut(s)	87, 291, 314, 347, 565
AluI	AGCT	5 cut(s)	87, 291, 314, 347, 565
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	485
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	3 cut(s)	33, 76, 626
AspS9I	GGNCC	2 cut(s)	443, 449
AsuHPI	GGTGA	2 cut(s)	164, 401
AsuNHI	GCTAGC	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	443, 449
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	3 cut(s)	170, 223, 472
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	3 cut(s)	341, 447, 551
BcoDI	GTCTC	1 cut(s)	72
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	5 cut(s)	356, 467, 506, 545, 566
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	341, 447, 551
Bme18I	GGWCC	2 cut(s)	443, 449
BmgT120I	GGNCC	2 cut(s)	443, 449
BmrFI	CCNGG	3 cut(s)	341, 447, 551
BmsI	GCATC	2 cut(s)	34, 65
BmtI	GCTAGC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	90, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
BseBI	CCWGG	3 cut(s)	341, 447, 551
BseDI	CCNNGG	2 cut(s)	90, 615
BseGI	GGATG	2 cut(s)	49, 241
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	110, 419
BseXI	GCAGC	1 cut(s)	15
Bsh1236I	CGCG	3 cut(s)	76, 92, 626
BshFI	GGCC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	3 cut(s)	128, 207, 530
BsnI	GGCC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	211, 490
BspACI	CCGC	4 cut(s)	90, 92, 149, 233
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	3 cut(s)	76, 92, 626
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	90, 615
BssMI	GATC	2 cut(s)	211, 490
BssNAI	GTATAC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	615
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	3 cut(s)	341, 447, 551
Bst4CI	ACNGT	2 cut(s)	51, 644
BstC8I	GCNNGC	2 cut(s)	567, 571
BstDEI	CTNAG	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	49, 241
BstFNI	CGCG	3 cut(s)	76, 92, 626
BstHHI	GCGC	3 cut(s)	33, 76, 626
BstKTI	GATC	2 cut(s)	214, 493
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	211, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 320
BstNI	CCWGG	3 cut(s)	341, 447, 551
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	339, 445, 549
BstUI	CGCG	3 cut(s)	76, 92, 626
BstV1I	GCAGC	1 cut(s)	15
BstZ17I	GTATAC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	49, 241
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	567, 571
CfoI	GCGC	3 cut(s)	33, 76, 626
Cfr13I	GGNCC	2 cut(s)	443, 449
Cfr42I	CCGCGG	1 cut(s)	93
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	9 cut(s)	87, 184, 291, 314, 347, 354, 410, 482, 565
CviKI_1	RGCY	9 cut(s)	87, 184, 291, 314, 347, 354, 410, 482, 565
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	2 cut(s)	213, 492
DpnII	GATC	2 cut(s)	211, 490
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	443, 449
Eco57I	CTGAAG	2 cut(s)	67, 494
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	3 cut(s)	339, 445, 549
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	1 cut(s)	287
FaiI	YATR	6 cut(s)	19, 70, 207, 285, 461, 649
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	283
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	56, 248
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	5 cut(s)	356, 467, 506, 545, 566
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	3 cut(s)	32, 75, 625
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	354
HhaI	GCGC	3 cut(s)	33, 76, 626
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	3 cut(s)	31, 74, 624
HinP1I	GCGC	3 cut(s)	31, 74, 624
HinfI	GANTC	2 cut(s)	257, 637
HphI	GGTGA	2 cut(s)	164, 401
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	5 cut(s)	216, 228, 295, 403, 474
Hpy188III	TCNNGA	2 cut(s)	261, 590
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	157, 191, 293, 380
HpyCH4III	ACNGT	2 cut(s)	51, 644
HpyCH4V	TGCA	6 cut(s)	4, 47, 126, 205, 283, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 320
HpyF3I	CTNAG	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	3 cut(s)	31, 74, 624
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	211, 490
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	2 cut(s)	34, 65
MaeI	CTAG	5 cut(s)	356, 467, 506, 545, 566
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	2 cut(s)	213, 492
MboI	GATC	2 cut(s)	211, 490
MboII	GAAGA	3 cut(s)	172, 308, 487
MluCI	AATT	4 cut(s)	23, 102, 414, 485
MnlI	CCTC	5 cut(s)	88, 397, 400, 474, 502
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	4 cut(s)	101, 378, 578, 652
MspA1I	CMGCKG	1 cut(s)	92
MspR9I	CCNGG	3 cut(s)	341, 447, 551
Mva1269I	GAATGC	3 cut(s)	128, 207, 530
MvaI	CCWGG	3 cut(s)	341, 447, 551
MvnI	CGCG	3 cut(s)	76, 92, 626
MwoI	GCNNNNNNNGC	2 cut(s)	53, 320
NdeII	GATC	2 cut(s)	211, 490
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	3 cut(s)	128, 207, 530
PfeI	GAWTC	2 cut(s)	257, 637
PfoI	TCCNGGA	2 cut(s)	445, 549
PkrI	GCNGC	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	3 cut(s)	339, 445, 549
PspGI	CCWGG	3 cut(s)	339, 445, 549
PspPI	GGNCC	2 cut(s)	443, 449
SacII	CCGCGG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	101, 378, 578, 652
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	211, 490
Sau96I	GGNCC	2 cut(s)	443, 449
ScrFI	CCNGG	3 cut(s)	341, 447, 551
SetI	ASST	9 cut(s)	89, 293, 316, 342, 349, 391, 466, 567, 621
SfaNI	GCATC	2 cut(s)	34, 65
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	443, 449
SpeI	ACTAGT	1 cut(s)	544
Sse9I	AATT	4 cut(s)	23, 102, 414, 485
SsiI	CCGC	4 cut(s)	90, 92, 149, 233
SspMI	CTAG	5 cut(s)	356, 467, 506, 545, 566
StyD4I	CCNGG	3 cut(s)	339, 445, 549
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	2 cut(s)	51, 644
TaqI	TCGA	1 cut(s)	489
TaqII	GACCGA	1 cut(s)	466
TasI	AATT	4 cut(s)	23, 102, 414, 485
TfiI	GAWTC	2 cut(s)	257, 637
Tru1I	TTAA	4 cut(s)	101, 378, 578, 652
Tru9I	TTAA	4 cut(s)	101, 378, 578, 652
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	252, 358, 594, 636
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	443, 449
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	5 cut(s)	356, 467, 506, 545, 566
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.